ATPase, GTPase, and RNA binding activities associated with the 206- kilodalton protein of turnip yellow mosaic virus

Journal of Virology

Volumn 70, Issue 11, 1996, Pages 8169-8174

  Kadaré, Gress ^a   David, Chantal ^a,b   Haenni, Anne Lise ^a  

^a INSTITUT JACQUES MONOD   (France)

^b INSTITUT DES SCIENCES DU VÉGÉTAL   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; GUANOSINE TRIPHOSPHATASE; VIRUS PROTEIN;

AFFINITY CHROMATOGRAPHY; AMINO ACID SUBSTITUTION; ARTICLE; DELETION MUTANT; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; TURNIP YELLOW MOSAIC VIRUS;

EID: 0029820585     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.70.11.8169-8174.1996     Document Type: Article

References (43)

1. Albo, C., A. Valencia, and A. Portela. 1995. Identification of an RNA binding region within the N-terminal third of the influenza A virus nucleoprotein. J. Virol. 69:3799-3806.
2. Boyer, J.-C., G. Drugeon, K. Séron, M.-D. Morch-Devignes, F. Agnès, and A.-L. Haenni. 1993. In vitro transcripts of turnip yellow mosaic virus encompassing a long 3′ extension or produced from a full-length cDNA clone harbouring a 2 kb-long PCR-amplified segment are infectious. Res. Virol. 144:339-348.
3. Bransom, K. L., and T. W. Dreher. 1994. Identification of the essential cysteine and histidine residues of the turnip yellow mosaic virus protease. Virology 198:148-154.
4. Citovsky, V., M. L. Wong, A. L. Shaw, B. V. V. Prasad, and P. Zambryski. 1992. Visualization and characterization of tobacco mosaic virus movement protein binding to single-stranded nucleic acids. Plant Cell 4:397-411.
5. Clertant, P., P. Gaudray, E. May, and F. Cuzin. 1984. The nucleotide binding site detected by affinity labeling in the large T proteins of polyoma and SV40 viruses is distinct from their ATPase catalytic site. J. Biol. Chem. 259:15196-15203.
6. Desbiez, C., C. David, A. Mettouchi, J. Laufs, and B. Gronenborn. 1995. Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication. Proc. Natl. Acad. Sci. USA 92:5640-5644.
7. Eagles, R. M., E. Balmori-Meliàn, D. L. Beck, R. C. Gardner, and R. L. S. Forster. 1994. Characterization of NTPase, RNA-binding and RNA-helicase activities of the cytoplasmic inclusion protein of tamarillo mosaic potyvirus. Eur. J. Biochem. 224:677-684.
8. Fernández, A., S. Laín, and J. A. García. 1995. RNA helicase activity of the plum pox potyvirus CI protein expressed in Escherichia coli. Mapping of an RNA binding domain. Nucleic Acids Res. 23:1327-1332.
9. Gorbalenya, A. E., and E. V. Koonin. 1989. Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Res. 17:8413-8440.
10. Gorhalenya, A. E., E. V. Koonin, A. P. Donchenko, and V. M. Blinov. 1989. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res. 17:4713-4730.
11. Gros, C., and G. Wengler. 1996. Identification of an RNA-stimulated NTPase activity in the predicted helicase sequence of the rubella virus non-structural polyprotein. Virology 217:367-372.
12. Hirling, H., M. Scheffner, T. Restle, and H. Stahl. 1989. RNA helicase activity associated with the human p68 protein. Nature (London) 339:562-564.
13. Jin, L., and D. L. Pelerson. 1995. Expression, isolation, and characterization of the hepatitis C virus ATPasc/RNA helicase. Arch. Biochem. Biophys. 323:47-53.
14. Jindal, H. K., C. B. Yong, G. M. Wilson, P. T. Tam, and C. R. Astell. 1994. Mutations in the NTP-binding motif of minute virus of mice (MVM) NS-1 protein uncouple ATPase and DNA helicase functions. J. Biol. Chem. 269: 3283-3289.
15. Kadaré, G., M. Rozanov, and A.-L. Haenni. 1995. Expression of the turnip yellow mosaic virus proteinase in Escherichia coli and determination of the cleavage site within the 206 kDa protein. J. Gen. Virol. 76:2853-2857.
16. Kadaré, G., K. Séron, and A.-L. Haenni. Unpublished data.
17. Kamer, G., and P. Argos. 1984. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res. 12:7269-7282.
18. Kim, D. W., Y. Gwack, J. H. Han, and J. Choe. 1995. C-terminal domain of the hepatitis C virus NS3 protein contains an RNA helicase activity. Biochem. Biophys. Res. Commun. 215:160-166.
19. Kobayashi, M., T. Toyoda, D. M. Adyshev, Y. Azuma, and A. Ishihama. 1994. Molecular dissection of influenza virus nucleoprotein: deletion mapping of the RNA binding domain. J. Virol. 68:8433-8436.
20. Laín, S., M. T. Martin, J. L. Riechmann, and J. A. Gareía. 1991. Novel catalytic activity associated with positive-strand RNA virus infection: nucleic acid-stimulated ATPase activity of the plum pox polyvirus helicaselike protein. J. Virol. 65:1-6.
21. Laín, S., J. L. Riechmann, and J. A. García. 1991. RNA helicase: a novel activity associated with a protein encoded by a positive strand RNA virus. Nucleic Acids Res. 18:7003-7006.
22. Lee, C.-G., and J. Hurwitz. 1992. A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3′ to the 5′ direction. J. Biol. Chem. 267:4398-4407.
23. Lee, C.-Z., J.-H. Lin, M. Chao, K. McKnight, and M. M. C. Lai. 1993. RNA-binding activity of hepatitis delta antigen involves two arginine-rich motifs and is required for hepatitis delta virus replication. J. Virol. 67:2221-2227.
24. Mirzayan, C., and E. Wimmer. 1994. Biochemical studies on poliovirus polypeptide 2C: evidence for ATPase activity. Virology 199:176-187.
25. Morch, M.-D., J.-C. Boyer, and A.-L. Haenni. 1988. Overlapping open reading frames revealed by complete nucleotide sequencing of turnip yellow mosaic virus genomic RNA. Nucleic Acids Res. 16:6157-6173.
26. Pai, E. F., U. Krengel, G. A. Petsko, R. S. Goody, W. Kabsch, and A. Wittinghofer. 1990. Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 Å resolution: implication for the mechanism of GTP hydrolysis. EMBO J. 9:2351-2359.
27. Peters, S. A., J. Verver, E. A. A. Nollen, J. W. M. van Lent, J. Wellink, and A. van Kammen. 1994. The NTP-binding motif in cowpea mosaic virus B polyprotein is essential for viral replication. J. Gen. Virol. 75:3167-3176.
28. Rikkonen, M., J. Peränen, and L. Kääriäinen. 1994. ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J. Virol. 68:5804-5810.
29. Kodriguez, P. L., and L. Carrasco. 1993. Poliovirus protin 2C has ATPase and GTPase activities, J. Biol. Chem. 268:8105-8110.
30. Rodriguez, P. L., and L. Carrasco. 1995. Poliovirus protein 2C contains two regions involved in RNA binding activity. J. Biol. Chem. 270:10105-10112.
31. Römisch, K., J. Webb, K. Lingelbach, H. Gausepohl, and B. Dobberstein. 1940. The 54-kDa protein of signal recognition particle contains a methionine-rich RNA binding domain. J. Cell Biol. 111:1793-1802.
32. Rouleau, M., R. J. Smith, J. B. Bancroft, and G. A. Mackie. 1994. Purification. properties. and subcellular localization of foxtail mosaic potexvirus 26-kDa protein. Virology 204:254-265.
33. Rozanov, M. N., G. Drugeon, and A.-L. Haenni. 1995. Papain-like proteinase of turnip yellow mosaie virus: a prototype of a new viral proteinase group. Arch. Virol. 140:273-288.
34. Rozanov, M. N., E. V. Koonin, and A. E. Gorbalenya. 1992. Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J. Gen. Virol. 73:2129-2134.
35. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
36. Saraste, M., P. R. Sibbald, and A. Wittinghofer. 1990. The P-loop - a common motif in ATP- and GTP-binding proteins. Trends Biochem. Sci. 15:430-434.
37. Sung, P., D. Higgins, L. Prakash, and S. Prakash. 1988. Mutation of lysine-48 to arginine in the yeast RAD3 protein abolishes its ATPase and DNA helicase activities but not the ability to hind ATP. EMBO J. 7:3263-3269.
38. Suzich, J. A., J. K. Tamura, F. Palmer-Hill, P. Warrener, A. Grakoui, C. M. Rice, S. M. Feinstone, and M. S. Collett. 1993. Hepatitis C virus NS3 protein polynucleotide-stimulated nucleoside triphosphatase and comparison with the related pestivirus and flavivirus enzymes, J. Virol. 67:6152-6158.
39. Tamura, J. K., P. Warrener, and M. S. Collett. 1993. RNA-stimulated NTPase activity associated with the p80 protein of the pestivirus bovine viral diarrhea virus. Virology 193:1-10.
40. Walker, J. E., M. Saraste, M. J. Runswick, and N. J. Gay. 1982. Distantly related sequences in the α- and β-subunits of ATP synthetase, myosin. kinases and other ATP-requiring enzymes and a common nueleotide binding fold. EMBO J. 1:945-951.
41. Warrener, P., and M. S. Collett. 1995. Pestivirus NS3 (p80) protein possesses RNA helicase activity. J. Virol. 69:1720-1726.
42. Warrener, P., J. K. Tamura, and M. S. Collett. 1993. RNA-stimulated NTPase activity associated with yellow fever virus NS3 protein expressed in bacteria. J. Virol. 67:989-996.
43. Weiland, J. J., and T. W. Dreher. 1993. Cis-preferential replication of the turnip yellow mosaic virus RNA genome. Proc. Natl. Acad. Sci. USA 90: 6095-6099.