Glass transition in DNA from molecular dynamics simulations

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 19, 1996, Pages 10173-10176

  Norberg, Jan ^a   Nilsson, Lennart ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

Author keywords

hydrogen bonds; mean square atomic fluctuation; oligonucleotide duplex; water

Indexed keywords

DNA; GLASS; OLIGONUCLEOTIDE; WATER;

AQUEOUS SOLUTION; ARTICLE; HYDROGEN BOND; MOLECULAR DYNAMICS; PHASE TRANSITION; PRIORITY JOURNAL; SIMULATION; TEMPERATURE;

BASE SEQUENCE; DNA; GLASS; HEAT; OLIGODEOXYRIBONUCLEOTIDES; SOFTWARE; THERMODYNAMICS;

EID: 0029811138     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.19.10173     Document Type: Article

References (24)

1. Borer, P. N., LaPlante, S. R., Kumar, A., Zanatta, N., Martin, A., Hakkinen, A. & Levy, G. C. (1994) Biochemistry 33, 2441-2450.
2. Norberg, J. & Nilsson, L. (1996) J. Biomol. NMR 7, 305-314.
3. Angell, C. A. (1995) Science 267, 1924-1935.
4. Doster, W. (1991) Mod. Phys. Lett. B 5, 1407-1414.
5. Doster, W., Cusack, S. & Petry, W. (1991) J. Non-Cryst. Solids 131-133, 357-361.
6. Frauenfelder, H., Petsko, G. A. & Tsernoglou, D. (1979) Nature (London) 280, 558-563.
7. Parak, F., Frolov, E. N., Mössbauer, R. L. & Goldanskii, V. I. (1981) J. Mol. Biol. 145, 825-833.
8. Wong, C. F., Zheng, C. & McCammon, J. A. (1989) Chem. Phys. Lett. 154, 151-154.
9. Loncharich, R. J. & Brooks, B. R. (1990) J. Mol. Biol. 215, 439-455.
10. Steinbach, P. J. & Brooks, B. R. (1993) Proc. Natl. Acad. Sci. USA 90, 9135-9139.
11. Steinbach, P. J. & Brooks, B. R. (1994) Chem. Phys. Lett. 226, 447-452.
12. Doster, W., Bachleitner, A., Dunau, R., Hiebl, M. & Lüscher, E. (1986) Biophys. J. 50, 213-219.
13. Laudát, J. & Laudát, F. (1992) Europhys. Lett. 20, 663-667.
14. Laudát, J. & Laudát, F. (1994) J. Biomol. Struct. Dyn. 11, 1345-1355.
15. Neubert, M., Bakule, R. & Nedbal, J. (1985) Proc. Int. Symp. Electrets, 5th, 825-830.
16. Arnott, S., Smith, P. J. C. & Chandrasekaran, R. (1976) in CRC Handbook of Biochemistry, Molecular Biology, and Nucleic Acids, ed. Fasman, G. D. (CRC, Cleveland), 3rd Ed., Vol. 2, pp. 411-422.
17. Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W. & Klein, M. L. (1983) J. Chem. Phys. 79, 926-935.
18. Brooks, C. L., III, & Karplus, M. (1983) J. Chem. Phys. 79, 6312-6325.
19. Verlet, L. (1967) Phys. Rev. 159, 98-103.
20. Ryckaert, J.-P., Ciccotti, G. & Berendsen, H. J. C. (1977) J. Comput. Phys. 23, 327-341.
21. Brooks, C. L., III, Pettitt, B. M. & Karplus, M. (1985) J. Chem. Phys. 83, 5897-5908.
22. Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S. & Karplus, M. (1983) J. Comp. Chem. 4, 187-217.
23. MacKerell, A. D., Jr., Wiórkiewicz-Kuczera, J. & Karplus, M. (1995) J. Am. Chem. Soc. 117, 11946-11975.
24. Drew, H. R., Wing, R. M., Takano, T., Broka, C., Tanaka, S., Itakura, K. & Dickerson, R. E. (1981) Proc. Natl. Acad. Sci. USA 78, 2179-2183.