Sensitive detection of human Caliciviridae by RT-PCR

Journal of Medical Virology

Volumn 50, Issue 3, 1996, Pages 207-213

  Stene Johansen, Kathrine ^a   Grinde, Bjørn ^a  

^a NORWEGIAN INSTITUTE OF PUBLIC HEALTH   (Norway)

Author keywords

Calicivirus; Gastroenteritis; Phylogeny; RNA sequence; Small round structured virus

Indexed keywords

ARTICLE; CALICIVIRUS; CONTROLLED STUDY; FECES ANALYSIS; GASTROENTERITIS; HUMAN; MAJOR CLINICAL STUDY; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; VIRUS DETECTION;

BASE SEQUENCE; CALICIVIRIDAE; CALICIVIRIDAE INFECTIONS; DNA, VIRAL; FECES; HUMANS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; RNA REPLICASE; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA;

CALICIVIRIDAE; NOROVIRUS; SMALL ROUND STRUCTURED VIRUS;

EID: 0029806329     PISSN: 01466615     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1096-9071(199611)50:3<207::AID-JMV1>3.0.CO;2-D     Document Type: Article

References (32)

1. Ando T, Mulders MN, Lewis DC, Estes MK, Monroe SS, Glass RI (1994): Comparison of the polymerase region of small round structured virus strains previously classified in three antigenic types by solid-phase immune electron microscopy. Archives of Virology 135: 217-226.
2. Berg ES, Olaisen B (1994): Hybrid PCR sequencing: sequencing of PCR products using a universal primer. BioTechniques 5:896-901.
3. Carter MJ (1994): Genomic organization and expression of astroviruses and caliciviruses. Archives of Virology 9:429-439.
4. Carter MJ, Cubitt WD (1995): Norwalk and related viruses. Current Opinion in Infectious Diseases 8:403-409.
5. Caul EO, Appleton H (1982): The electron microscopical and physical characteristics of small round human fecal viruses: An interim scheme for classification. Journal of Medical Virology 9:257-265.
6. Chomczynski P, Sacchi N (1987): Single-step of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analytical Biochemistry 162:156-159.
7. Cobb BD, Clarkson JM (1994): A simple procedure for optimising the polymerase chain reaction (PCR) using modified Taguchi methods. Nucleic Acid Research 22:18:3801-3805.
8. Cubitt WD (1987): The Candidate calicivirus. In "Novel Diarrhoea Viruses." Ciba Symposium 129, London: John Wiley and Sons, pp 126-143.
9. Cubitt WD (1989): Diagnosis, occurrence and clinical significance of the human 'candidate' caliciviruses. Progress in Medical Virology 36:103-119.
10. Cubitt WD, Jiang XJ, Wang J, Estes MK (1994): Sequence similarity of human caliciviruses and small round structured viruses. Journal of Medical Virology 43:252-258.
11. Felsenstein J (1993): PHYLIP (Phylogeny Infercenc Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle, USA.
12. Green SM, Dingle KE, Lambden PR, Caul EO, Ashley CR, Clarke IN (1994): Human enteric Caliciviridae: a new prevalent small round structured virus group defined by RNA-dependent RNA polymerase and capsid diversity. Journal of General Virology 75:1883-1888.
13. Green SM, Lambden PR, Caul EO, Ashley CR, Clarke IN (1995): Capsid diversity in small round-structured viruses: molecular characterization of an antigenically distinct human calicivirus. Virus Research 37:271-283.
14. Grinde B, Jonassen TØ, Ushijima H (1994): Sensitive detection of group A rotaviruses by immunomagnetic separation and RT-PCR. Journal of Virological Methods 55:327-338.
15. Hedberg CW, Osterholm MT (1993): Outbreaks of food-born and waterborn viral gastroenteritis. Clinical Microbiology Reviews 6:199-210.
16. Hillman B, Morris TJ, Kellen WR, Hoffman D, Schlegl DE (1982): An invertebrate calici-like virus: Evidence for partial virion disintegration in host excreta. Journal of General Virology 69:731-738.
17. Jiang XI, Wang M, Wang K, Estes MK (1993): Sequence and genomic organization of Norwalk virus. Virology 195:51-61.
18. Jiang X, Wang J, Estes MK (1995): Characterization of SRSVs using RT-PCR and a new antigen ELISA. Archives of Virology 140:363-374.
19. Jonassen TØ, Monceyron C, Lee TW, Kurtz JB, Grinde B (1995): Detection of all serotypes of human astrovirus by the polymerase chain reaction. Journal of Virological Methods 52:327-334.
20. Khan AS, Moe CL, Glass GI, Monroe SS, Estes MK, Chapman LE, Jiang X, Humphrey C, Pon E, Iskander JK, Schonberger LB (1994): Norwalk virus associated gastroenteritis traced to ice consumption aboard a cruise ship in Hawaii: comparison and application of molecular method-based assays. Journal of Clinical Microbiology 32:318-322.
21. Kjeldsberg E (1986): Demonstration of calicivirus in human faeces by immunosorbent and immunogold-labelling electron microscopy methods. Journal of Virological Methods 14:321-333.
22. Lambden PR, Caul EO, Ashley CR, Clarke IN (1993): Sequence and genome organization of a human small round-structured (Norwalk-like) virus. Science 259:516-518.
23. Lambden PR, Clarke IN (1995): Genome organization in the Caliciviridae. Trends in Microbiology 3:261-265.
24. Lew JF, Kapikian AZ, Valdesuso J, Grenn KY (1994): Molecular characterization of Hawaii virus and other Norwalk-like viruses: evidence for genetic polymorphism among human caliciviruses. Journal of Infectious Diseases 170:535-542.
25. Matson DO, Zhong W, Nakata S, Numata K, Jiang X, Pickering L, Chiba S, Estes MK (1995): Molecular characterization of a human calicivirus with sequence relationships closer to animal caliciviruses than other known human caliciviruses. Journal of Medical Virology 45:215-222.
26. Moe CL, Gentsch J, Ando T, Grihmann G, Monroe SS, Jiang X, Wang J, Estes MK, Seto Y, Humphrey C, Stine S, Glass RI (1994): Application of PCR to detect Norwalk virus in fecal specimens from outbreaks of gastroenteritis. Journal of Clinical Microbiology 32:642-648.
27. Moussa A, Chasey D, Lavazza A, Capucci L, Smid B, Meyers G, Rossi C, Thiel HJ, Vlasak R, Ronsholt L (1992): Haemorrhagic diseases of lagomorphs: Evidence for a calicivirus. Veterinary Microbiology 33:375-381.
28. Norcott JP, Green DL, Lewis D, Estes MK, Barlow KL, Brown DWG (1994): Genomic diversity of small round structured viruses in the United Kingdom. Journal of Medical Virology 44:280-286.
29. Simms D, Cizdziel PE, Chomczynski P (1993/94): TRIzol™: a new reagent for optimal single-step isolation of RNA. Focus 15:99-102.
30. Thornhill TS, Kalica AR, Wyatt RG, Kapikian AZ, Chanock RM (1975): Patterno of shedding of the Norwalk particle in stools during experimentally induced gastroenteritis in volunteers as determined by immune electron microscopy. Journal of Infectious Disease 132:28-34.
31. Wang J, Jiang X, Madore HP, Gray J, Desselberger G, Adno T, Seto Y, Oishi I, Lew J, Green KY, Estes MK (1994): Sequence diversity of small, round-structured viruses in the Norwalk virus group. Journal of Virology 68:5982-5990.
32. Willcocks NM, Silcock JG, Carter MJ (1993): Detection of Norwalk virus in the UK by the polymerase chain reaction. FEMS Microbiology Letters 112:7-12.