Cloning and characterization of the first two genes of the non-oxidative part of the Saccharomyces cerevisiae pentose-phosphate pathway

Current Genetics

Volumn 30, Issue 5, 1996, Pages 404-409

  Miosga, Thomas ^a   Zimmermann, Friedrich K ^a  

^a DARMSTADT UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

D ribose 5 phosphate ketol isomerase; D ribulose 5 phosphate 3 epimerase; Pentose phosphate pathway; Saccharomyces cerevisiae

Indexed keywords

COMPLEMENTARY DNA; EPIMERASE; ISOMERASE; KETOL; RIBULOSE PHOSPHATE;

AMINO ACID SEQUENCE; ARTICLE; CELL VIABILITY; DELETION MUTANT; ENZYME ACTIVITY; FUNGAL GENETICS; GENE DOSAGE; MOLECULAR CLONING; NONHUMAN; OPEN READING FRAME; PENTOSE PHOSPHATE CYCLE; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

ALDOSE-KETOSE ISOMERASES; AUTOMATIC DATA PROCESSING; CARBOHYDRATE EPIMERASES; CLONING, MOLECULAR; DNA, COMPLEMENTARY; GENE DELETION; GENE DOSAGE; GENE EXPRESSION REGULATION, FUNGAL; HAPLOIDY; OPEN READING FRAMES; PLASMIDS; RACEMASES AND EPIMERASES; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, NUCLEIC ACID; XYLULOSE;

SACCHAROMYCES CEREVISIAE;

EID: 0029800865     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002940050149     Document Type: Article

References (50)

1. Apel TW, Scherer A, Adachi T, Auch D, Ayane M, Reth M (1995) The ribose 5-phosphate isomerase-encoding gene is located immediately downstream from that encoding murine immunoglobuloin kappa. Gene 156:191-197
2. Bennetzen JL, Hall BD (1982) Codon selection in yeast. J Biol Chem 257:3026-3031
3. Benoist C, O'Hare K, Breathnach R, Chambon P (1980) The ovalbumin gene - sequence of putative control regions. Nucleic Acids Res 8:127-142
4. Blattner FR, Burland V, Plunkett G III, Sofia HJ, Daniels DL (1993) Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Nucleic Acids Res 21:5408-5417
5. Boles E, Lehnert W, Zimmermann FK (1993) The role of the NAD-dependent glutamate dehydrogenase in restoring growth on glucose of a Saccharomyces cerevisiae phosphoglucose isomerase mutant. Eur J Biochem 217:469-477
6. Boles E, Liebetrau W, Hofmann M, Zimmermann FK (1994) A family of hexosephosphate mutases in Saccharomyces cerevisiae. Eur J Biochem 220:83-96
7. Botstein D, Falco SC, Stewart SE, Brennan M, Scherer S, Stinchcomb DT, Struhl K, Davis RW (1979) Sterile host yeast (SHY): A eukaryotic system of biological containment for recombinant DNA experiments. Gene 8:17-24
8. Burland V, Plunkett G III, Sofia HJ, Daniels DL, Blattner FR (1995) Analysis of the Escherichia coli genome. VI. DNA sequence of the region from 92.8 through 100 minutes. Nucleic Acids Res 23:2105-2119
9. Ciriacy M, Breitenbach I (1979) Physiological effects of seven different blocks in glycolysis in Saccharomyces cerevisiae. J Bacteriol 139:152-160
10. Dobson MJ, Tuite MF, Roberts NA, Kingsman AJ, Kingsman SM, Perkins RE, Conroy SC, Dunbar B, Fothergill LA (1982) Conservation of high-efficiency promoter sequences in Saccharomyces cerevisiae. Nucleic Acids Res 10:2625-2637
11. Fletcher TS, Kwee IL, Nakada T, Largman C, Martin BM (1992) DNA sequence of the yeast transketolase gene. Biochemistry 31:1892-1896
12. Galibert et al. (1996) Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X. EMBO J 15:2031-2049
13. Ghosh P, Singh A (1993) Physicochemical and biological treatments for enzymatic/microbial conversion of lignocellulosic biomass. Adv Appl Microbiol 39:295-333
14. Gietz RD, Sugino A (1988) New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74:527-534
15. Hahn S, Hoar ET, Guarente L (1985) Each of three "TATA elements" specifies a subset of the transcription initiation sites at the CYC-1 promoter of Saccharomyces cervisiae. Proc Natl Acad Sci USA 82:8562-8566
16. Hallborn J, Walfridsson M, Airaksinen U, Ojamo H, Hahn-Hägerdal B, Penttilä M, Keränen S (1991) Xylitol production by recombinant Saccharomyces cerevisiae. Bio/Technology 9:1090-1095
17. Henikoff S, Cohen EH (1984) Sequences responsible for transcription termination on a gene segment of Saccharomyces cerevisiae. Mol Cell Biol 4:1515-1520
18. Ho NWY, Chang S-F (1989) Cloning of yeast xylulokinase gene by complementation of E. coli mutations. Enzyme Microbiol Technol 11:417-421
19. Holland MJ, Holland JP, Thill GP, Jackson KA (1981) The primary structures of two yeast enolase genes. J Biol Chem 256:1385-1395
20. Hove-Jensen B, Maigaard M (1993) Escherichia coli rpiA gene encoding ribose-5-phosphate isomerase A. J Bacteriol 175:5628-5635
21. Irniger S, Egli CM, Braus GH (1991) Different classes of polyadenylation sites in the yeast Saccharomyces cerevisiae. Mol Cell Biol 11:3060-3069
22. Kemp BE, Pearson RB (1990) Protein kinase recognition motifs. Trends Biochem Sci 15:342-346
23. Kötter P, Amore R, Hollenberg CP, Ciriacy M (1990) Isolation and characterization of the Pichia stipitis xylitol dehydrogenase gene, XYL2, and construction of a xylose-utilizing Saccharomyces cerevisiae transformant. Curr Genet 18:493-500
24. Kusian B, Yoo J-G, Bednarski R, Bowien B (1992) The Calvin-cycle enzyme pentose-5-phosphate 3-epimerase is encoded within the cfx operons of the chemoautotrophic Alcaligenes eutrophus. J Bacteriol 174:7337-7344
25. Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105-132
26. Lyngstadaas A, Løbner-Olesen A, Boye E (1995) Characterization of three genes in the dam-containing operon of Escherichia coli. Mol Gen Genet 247:546-554
27. Marchler G, Schuller C, Adam G, Ruis H (1993) A Saccharomyces cerevisiae UAS element controlled by protein kinase A activates transcription in response to a variety of stress conditions. EMBO J 12:1997-2003
28. Miosga T, Zimmermann FK (1995) Genetic and functional analysis of the Saccharomyces cerevisiae gene EPI1 encoding ribulose-5-phosphate 3-epimerase. Yeast 11 (special issue):S500
29. Nowitzki U, Wyrich R, Westhoff P, Henze K, Schnarrenberger C, Martin W (1995) Cloning of the amphibolic Calvin-cycle/OPPP enzyme D-ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) from spinach chloroplasts: functional and evolutionary aspects. Plant Mol Biol 29:1279-1291
30. Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448
31. Pless DD, Lennarz WJ (1977) Enzymatic conversion of proteins to glycoproteins. Proc Natl Acad Sci USA 74:134-138
32. Rosey EL, Stewart GC (1992) Nucleotide and deduced amino-acid sequences of the lacR, lacABCD, and lacFE genes encoding the repressor, tagatose-6-phosphate gene cluster, and sugar-specific phosphotransferase system components of the lactose operon of Streptococcus mutants. J Bacteriol 174:6159-6170
33. Rothstein RJ (1983) One-step gene disruption in yeast. Methods Enzymol 101:202-211
34. Russo P, Li W-Z, Hampsey DM, Zaret KS, Sherman F (1991) Distinct cis-acting signals enhance 3′ endpoint formation of CYC1 mRNA in the yeast Saccharomyces cerevisiae. EMBO J 10:563-571
35. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
36. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
37. Schaaff I, Hohmann S, Zimmermann FK (1990) Molecular analysis of the structural gene for yeast transaldolase. Eur J Biochem 188:597-603
38. Schaaff-Gerstenschläger I, Mannhaupt G, Vetter I, Zimmermann FK, Feldmann H (1993) TKL2, a second transketolase gene of Saccharomyces cerevisiae. Cloning, sequence and deletion analysis of the gene. Eur J Biochem 217:487-492
39. Schaaff-Gerstenschläger I, Miosga T, Zimmermann FK (1994) Genetics of the pentose-phosphate pathway enzymes in Saccharomyces cerevisiae. Biores Technol 50:59-64
40. Schiestl RH, Gietz RD (1989) High-efficiency transformation of intact yeast cells by single-stranded nucleic acids as a carrier. Curr Genet 16:339-346
41. Sharp PM, Li W-H (1987) The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15:1281-1295
42. Sørensen KI, Hove-Jensen B (1996) Ribose catabolism of Escherichia coli: characterization of the rbiB gene encoding ribose phosphate isomerase B and of the rbiR gene, which is involved in regulation of rpiB expression. J Bacteriol 178:1003-1011
43. Sprenger GA (1995) Genetics of pentose-phosphate pathway enzymes of Escherichia coli K-12. Arch Microbiol 164:324-330
44. Sundström M, Lindqvist Y, Schneider G, Hellman U, Ronne H (1993) Yeast TKL1 gene encodes a transketolase that is required for efficient glycolysis and biosynthesis of aromatic amino acids. J Biol Chem 268:24346-24252
45. Svetlov W, Cooper TG (1995) Review: compilation and characteristics of dedicated transcription factors in Saccharomyces cerevisiae. Yeast 11:1439-1484
46. Walfridsson M, Hallborn J, Penttilä M, Keranen S, Hahn-Hägerdal B (1995) Xylose-metabolizing Saccharomyces cerevisiae strains overexpressing the TKL1 and TAL1 genes encoding the pentose-phosphate pathway enzymes transketolase and transaldolase. Appl Environ Microbiol 61:4184-4190
47. Williamson WT, Wood WA (1966) D-ribulose 5-phosphate 3-epimerase. Methods Enzymol 9:605-608
48. Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of M13mp18 and pUC19 vectors. Gene 33:103-119
49. Zamenhoff S (1957) Preparation and assay of deoxyribonucleic acids from animal tissues. Methods Enzymol 3:696-704
50. Zaret KS, Sherman F (1982) DNA sequence required for efficient transcription-termination in yeast. Cell 28:563-573