The nucleotide sequence of the Pseudomonas aeruginosa pyrE-crc-rph region and the purification of the crc gene product

Journal of Bacteriology

Volumn 178, Issue 19, 1996, Pages 5627-5635

  MacGregor, Carolyn H ^a   Arora, Shiwani K ^a,b   Hager, Paul W ^a   Dail, Mary Beth ^a   Phibbs Jr , Paul V ^a  

^a EAST CAROLINA UNIVERSITY   (United States)

^b UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENDONUCLEASE; EXONUCLEASE; GENE PRODUCT; OROTATE PHOSPHORIBOSYLTRANSFERASE; RIBONUCLEASE;

ARTICLE; DNA REPAIR; ENZYME ASSAY; ESCHERICHIA COLI; GENE MAPPING; GENETIC TRANSCRIPTION; IMMUNOBLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS FLUORESCENS; REPRESSOR GENE;

EID: 0029796309     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.178.19.5627-5635.1996     Document Type: Article

References (49)

1. Alba, H. 1985. Transcription of Escherichia coli adenylate cyclase gene is negatively regulated by cAMP-cAMP receptor protein. J. Biol. Chem. 260:3063-3070.
2. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410,
3. Arora, S. K. 1994. Characterization of the crc gene and its gene product, required for catabolite repression control in Pseudomonas aeruginosa PAO1. Ph.D. dissertation. East Carolina University, Greenville, N.C.
4. Babtychuk, E., S. Kushnir, M. Van Montagu, and D. Inze. 1994. The Arabidopsis thaliana apurinic endonuclease Arp reduces human transcription factors Fos and Jun. Proc. Natl. Acad. Sci. USA 91:3299-3303.
5. Brunschwig, E., and A. Dirzins. 1992. A two component T7 system for the overexpression of genes in P. aeruginosa. Gene 111:35-41.
6. Chamblis, G. H. 1993. Carbon source-mediated catabolite repression, p. 213-219. In A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.), Bacillus subtilis and other gram-positive bacteria: biochemistry, physiology, and molecular genetics. American Society for Microbiology, Washington, D.C.
7. Collado-Vides, J., B. Magasanik, and J. D. Gralla. 1991. Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev. 55:371-394.
8. Cunningham, R. P., S. M. Saporito, S. G. Spitzer, and B. Weiss. 1986. Endonuclease IV (nfo) mutant of Escherichia coli. J. Bacteriol. 168:1120-1127.
9. Deutscher, J., J. Rezier, C. Fischer, A. Gallnier, M. Saler, Jr., and M. Steinmetz. 1994. Loss of protein kinase-catalyzed phosphorylation of HPr, a phosphocarrier protein of the phosphotransferase system, by mutation of the pisH gene confers catabolite repression resistance to several catabolic genes of Bacillus subtilis. J. Bacteriol. 176:3336-3344.
10. Ey, P. L., and L. K. Ashman. 1986. The use of alkaline phosphatase-conjugated anti-immunoglobulin with immunoblots for determining the specificity of monoclonal antibodies to protein mixtures. Methods Enzymol. 121:497-509.
11. Fujita, Y., Y. Miwa, A. Galinier, and J. Deutscher. 1995. Specific recognition of the Bacillus subtilis gnt cis-acting catabolite-responsive element by a protein complex formed between CcpA and seryl-phosphorylated HPr. Mol. Microbiol. 17:953-960.
12. Gu, L., S.-M. Huang, and M. Sander. 1993. Drosophila Rrp1 complements E. coli xth nfo mutants: protection against both oxidative and alkylation induced DNA damage. Nucleic Acids Res. 21:4788-1795.
13. Holloway, B. W., V. Krishnapillai, and A. F. Morgan. 1979. Chromosomal genetics of Pseudomonas. Microbiol. Rev. 43:73-102.
14. Hueck, C. J., and W. Hillen. 1995. Calabolite repression in Bacillus subtilis: a global regulatory mechanism for the Gram-positive bacteria? Mol. Microbiol. 18:395-401.
15. Kraus, A., C. Hueck, D. Gartner, and W. Hillen. 1994. Catabolitc repression at Bacillus subtilis xyl operon involves a cis element functional in the context of an unrelated sequence, and glucose exerts an additional xy/R-dependent repression. J. Bacteriol. 176:1738-1745.
16. Lynch, W. H., and M. Franklin. 1978. Effects of temperature on diauxic growth with glucose and organic acids in Pseudomonas fluorecens. Arch. Microbiol. 118:133-140.
17. MacGregor, C. H., L. Runjen-Janecky, N. A. Zielinski, P. V. Phibbs, Jr., and S. E. H. West. 1995. The vfr gene, a member of the crp family, is not required for catabolilc repression control in Pseudomonas aeruginosa, abstr. K-56, p. 546. In Abstracts of the 95th General Meeting of the American Society of Microbiology 1995. American Society for Microbiology, Washington, D.C.
18. MacGregor, C. H., J. A. Wolf, S. K. Arora, P. B. Hylemon, and P. V. Phibbs, Jr. 1992. Catabolite repression control in Pseudomonas aeruginosa, p. 198-206. In E. Galli, S. Silver and B. Witholl (ed.), Pseudomonas molecular biology and biotechnology. American Society for Microbiology, Washington, D.C.
19. MacGregor, C. H., J. A. Wolff, S. K. Arora, and P. V. Phibbs, Jr. 1991. Cloning of a catabolitc repression control (crc) gene from Pseudomonas aeruginosa, expression of the gene in Escherichia coli, and identification of the gene product in Pseudomonas aeruginosa. J. Bacteriol. 173:7204-7212.
20. Magasanik, B., and F. C. Neidhardt. 1987. Regulation of carbon and nitrogen utilization, p. 1318-1325. In P.C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella typhimurium: cellular and molecular biology. American Society for Microbiology, Washington, D.C.
21. Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory. Cold Spring Harbor, N.Y.
22. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
23. Mowa, R. N., P. Green, P. Nakamura, and M. Inouye. 1981. Interaction of cAMP receptor with the ompA gene, a gene for a major outer membrane protein of E. coli. FEBS Lett. 128:186-190.
24. Musso, R. E., R. Dilauro, S. Adhya, and B. deCrombrugghe. 1977. Dual control for transcription of the galactose operon by cyclic AMP and its receptor protein at two interspersed promoters. Cell 12:847-854.
25. Nugent, M., S. M. Huang, and M. Sander. 1993. Characterization of the apurinic endonuclease activity of Drosophila Rrpl. Biochemistry 32:11445-11452.
26. Nunn, D., S. Bergman, and S. Lory. 1990. Products of three accessory genes, pilB, pilC, and pilD, are required for biogenesis of Pseudomonas aeruginosa pili. J. Bacteriol. 172:2911-2919.
27. Ogasawara, N., S. Nakal, and H. Yoshikawa. 1984. Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin. DNA Res. 1:1-14,
28. Olson, R. H., G. DeBusscher, and W. R. McComble. 1981. Development of broad-host-range vectors and gene banks: self cloning of the Pseudomonas aeroginosa PAO chromosome. J. Bacteriol. 150:60-69.
29. Phillips, A. T., and L. M. Mulfinger. 1981. Cyclic adenosine 3′,5′-monophosphate levels in Pseudomonas putida and Pseudomonas aeruginosa during induction and carbon catabolite repression of histidase synthesis. J. Bacteriol. 145:1286-1292,
30. Puyet, A., B. Greenberg, and S. A. Licks. 1989. The exoA gene of Streptococcus pneumoniae and its product, a DNA exonuclease with apurinic endonuclease activity. J. Bacteriol. 171:2278-2286.
31. Robson, C. N., and I. D. Hickson. 1991. Isolation of cDNA clones encoding a human apurinic/apyrimidinic endonucleasc that corrects DNA repair and mulagenesis defects in E. coli xth (endonuclease III) mutants. Nucleic Acids Res. 19:5519-5523.
32. Robson, C. N., A. M. Milne, D. J. C. Pappin, and I. D. Hickson. 1993. Isolation of cDNA clones encoding an enzyme from bovine cells that repairs oxidative DNA damage in vitro: homology with bacterial repair enzymes. Nucleic Acids Res. 19:1087-1092.
33. Saler, M. H. 1989. Protein phosphorylation and allosteric control of'inducer exclusion and catabolite repression by the bacterial phosphoenolpyruvate: sugar phosphotransferase system. Microbiol. Rev. 53:109-120.
34. Sander, M., K. Lowenhaupt, W. S. Lane, and A. Rich. 1991. Cloning and characterization of Rrpl, the gene encoding Drosophila strand transferase: carboxy-terminal homology to DNA repair endo/exonucleases. Nucleic Acids Res. 19:4523-4529.
35. Sander, M., K. Lowenhaupt, and A. Rich. 1991. Drosophila Rrpl protein: an apurinic endonuclease with homologous recombination activities. Proc. Natl. Acad. Sci. USA 88:6780-6784.
36. Saporito, S. M., B. J. Smith-White, and R. P. Cunningham. 1988. Nucleotide sequence of the xth gene of Escherichia coli K-12, J. Bacteriol. 170:4542-4547.
37. Setlow, P. 1973. Inability to detect cyclic-AMP in vegetative or sporulating cells or dormant spores of Bacillus megaterium. Biochem. Biophys. Res. Commun. 52:365-372.
38. Siegel, L. S., P. B. Hylemon, and P. V. Phibbs, Jr. 1977. Cyclic adenosine 3′,5′-monophosphate levels and activities of adenylate cyclase and cyclic adenosinc 3′,5′-monophosphate phosphodiesterase in Pseudomonax and Bacteriodes, J. Bacteriol. 129:87-96.
39. Simon, R., U. Priefer, and A. Punier. 1983. A broad host range mobilization system for in vitro genetic engineering: transposon mutagenesis in gram negative bacteria. Bio/Technology 1:784-791.
40. Sonenahein, A. L. 1989. Metabolic regulation of sporulation and other stationary phase phenomena, p. 109-130. In I. Smith, R. A. Slepocky, and P. Setlow (ed.), Regulation of procaryotie development. American Society for Microbiology. Washington, D.C.
41. Stanier, R. Y., N. J. Palleroni, and M. Duudoroff. 1966. The aerobic Pseudomonads: a taxonomic study. J. Gen. Microbiol. 43:159-271.
42. Sykes, P. A., G. Burns, J. Menard, K. Hatter, and J. R. Sokatch. 1987. Molecular cloning of genes encoding branched-chain keto acid dehydrogenase of Pseudomonas putida. J. Bacteriol. 169:1619-1625.
43. Taylor, A. F., and B. Weiss. 1982. Role of exonuclease III in the base excision repair of uracil-containing DNA. J. Bacteriol. 151:351-357.
44. Thiele, O., H. Willems, W. Oswald, and H. Krausi. GenBank accession number X79075.
45. Walker, L. J., C. N. Robson, E. Black, D. Gillespie, and I. D. Hickson. 1993. Identification of residues in the human DNA repair enzyme MAPI (Ref-1) that are essential for redox regulation of Jun DNA binding. Mol. Cell. Biol. 13:5370-5376.
46. West, S. G. H., A. K. Sample, and L. J. Runyen-Janecky. 1994. The vfr gene product, required for Pseudomonas aeruginosa exotoxin A and protease production, belongs to the cyclic AMP receptor protein family. J. Bacteriol. 176:7532-7542.
47. Wolff, J. A., C. H. MacGregor, R. C. Eisenberg, and P. V. Phibbs, Jr. 1991. Isolation and characterization of cutabolite repression control mutants of Pstudomonas aeruginosa PAO. J. Bacteriol. 173:4700-4706.
48. Wray, L. V., F. K. Pattengill, and S. H. Fisher. 1994. Catabolite repression of the Bacillus subtilis hut operon requires a cis-acting site located downstream of the transcription initiation site. J. Bacteriol. 176:1894-1902.
49. Xanthoudakis, S., G. Miao, and T. Curran. 1994. The redox and DNA-repair activities of Ref-1 are encoded by nonoverlapping domains. Proc. Natl. Acad. Sci. USA 91:23-27.