Nucleotide sequence and role in DNA amplification of the direct repeats composing the amplifiable element AUD1 of Streptomyces lividans 66

Molecular Microbiology

Volumn 21, Issue 5, 1996, Pages 1037-1047

  Volff, J N ^a,c   Eichenseer, C ^a   Vieil, P ^a   Piendl, W ^b   Altenbuchner, J ^a  

^a UNIVERSITY OF STUTTGART   (Germany)

^b UNIVERSITY OF INNSBRUCK   (Austria)

^c ROBERT BOSCH HOSPITAL   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN;

ARTICLE; CONTROLLED STUDY; DNA BINDING; DNA SEQUENCE; GENE AMPLIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STREPTOMYCES LIVIDANS;

EID: 0029795317     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1996.761428.x     Document Type: Article

References (42)

1. Altenbuchner, J. (1994) Hohe genetische Instabilität von streptomyceten durch chromosomale deletionen und DNA-amplifikationen. BioEngineering 3: 33-46.
2. Altenbuchner, J., and Cullum, J. (1984) DNA amplification and an unstable arginine gene in Streptomyces lividans 66. Mol Gen Genet 195: 134-138.
3. Altenbuchner, J., and Cullum, J. (1985) Structure of an amplifiable DNA sequence in Streptomyces lividans 66. Mol Gen Genet 201: 192-197.
4. Altenbuchner, J., Vieil, P., and Pelletier, I. (1992) Positive selection vectors based on palindromic sequences. Meth Enzymol 216: 457-466
5. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
6. Aubert, M., Weber, E., Schneider, D., Simonet, J.-M., and Decaris, B. (1993) Primary structure analysis of a duplicated region in the amplifiable AUD6 locus of Streptomyces ambofaciens DSM40697. FEMS Microbiol Lett 113: 49-56.
7. Betzler, M., Dyson, P., and Schrempf, H. (1987) Relationship of an unstable argG gene to a 5.7kb amplifiable DNA sequence in Streptomyces lividans 66. J Bacteriol 169: 4804-4810.
8. Birch, A., Haüsler, A., Rüttener, C., and Hütter, R. (1991) Chromosomal deletion and rearrangement in Streptomyces glaucescens. J Bacteriol 173: 3531-3538.
9. Blaak, H., Schnellmann, J., Walter, S., Henrissat, B., and Schrempf, H. (1993) Characteristics of an exochitinase from Streptomyces olivaceoviridis, its corresponding gene, putative protein domains and relationship to other chitinases. Eur J Biochem 214: 659-669.
10. Brosius, J., Dull, T.J., Sleeter, D.D., and Noller, H.F. (1981) Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148: 107-127.
11. Chung, C.T., Niemela, S.L., and Miller, R.H. (1989) One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci USA 86: 2172-2175.
12. Devereux, J., Haberli, P., and Smithies, O. (1984) A comprehensive set of sequence analysis programs for the VAX. Nucl Acids Res 12: 387-395.
13. Egan, S.M., and Schleif, R.F. (1994) DNA-dependent renaturation of an insoluble DNA binding protein. J Mol Biol 243: 821-829.
14. Gribskov, M., Devereux J., and Burgess, R.R. (1984) The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. Nucl Acids Res 12: 539-549.
15. Hopwood, D.A., Bibb, M.J., Chater, K.F., Kieser, T., Bruton, C.J., Kieser, H.M., Lydiate, D.J., Smith, C.P., Ward, J.M., and Schrempf, H. (1985) Genetic Manipulation of Streptomyces: A Laboratory Manual. Norwich, UK: John Innes Foundation.
16. Hromic, A., and Kirby, R. (1989) Isolation and study of two mutants of Streptomyces cattleya affected in DNA repair and genetic instability. FEMS Microbiol Lett 57: 139-144.
17. Hütter, R., and Eckhardt, T. (1988) Genetic manipulation. In Actinomycetes in Biotechnology. Goodfellow, M., William, S.T., and Mordarski, M. (eds). London: Academic Press, pp. 89-184.
18. Katz, E., Thompson, C.J., and Hopwood, D.A. (1983) Cloning and expression of the tyrosine gene from Streptomyces antibioticus in S. lividans. J Gen Microbiol 129: 2703-2714.
19. Kieser, T. (1984) Factors affecting the isolation of cccDNA from Streptomyces lividans and Escherichia coli. Plasmid 12: 19-36.
20. Lin, Y.S., Kieser, H.M., Hopwood, D.A., and Chen, C.W. (1993) The chromosomal DNA of Streptomyces lividans 66 is linear. Mol Microbiol 10: 923-933.
21. Lydiate, D.J., Malpartida, F., and Hopwood, D.A. (1985) The Streptomyces plasmid SCP2*: its functional analysis and development into useful cloning vectors. Gene 35: 223-235.
22. Marsh, L.J., Erfle, M., and Wykes, E.J. (1984) The pIC plasmid and phage vectors with versatile cloning sites for recombinant selection by insertional inactivation. Gene 32: 481-485.
23. Miyashita, K., Fujii, T., and Sawada, Y. (1991) Molecular cloning and characterization of chitinase genes from Streptomyces lividans 66. J Gen Microbiol 137: 2065-2072.
24. Muth, G., Nußbaumer, B., Wohlleben, W., and Pühler, A. (1989) A vector system with temperature-sensitive replication for gene disruption and mutational cloning in streptomycetes. Mol Gen Genet 219: 341-348.
25. Pfeifer, O., Pelletier, I., Altenbuchner, J., and van Pee, K.-H. (1992) Molecular cloning and sequencing of a non-haem bromoperoxidase gene from Streptomyces aureofaciens ATCC10762. J Gen Microbiol 138: 1123-1131.
26. Piendl, W., Eichenseer, C., Vieil, P., Altenbuchner, J., and Cullum, J. (1994) Analysis of putative DNA amplification genes in the element AUD1 of Streptomyces lividans 66. Mol Gen Genet 244: 439-443.
27. Pridham, T.G., Anderson, P., Foly, C., Linderfelser, C.W., Hesseltime, C.W., and Benedict, R.C. (1957) A selection of media for maintenance and taxonomic studies of Streptomyces. Antibiotics Annu 1956-1957: 947-953.
28. Rauland, U., Glocker, I., Redenbach, M., and Cullum, J. (1995) DNA amplifications and deletions in Streptomyces lividans 66 and the loss of one end of the linear chromosome. Mol Gen Genet 246: 37-44.
29. Redenbach, M., Flett, F., Piendl, W., Glocker, I., Rauland, U., Wafzig, O., Kliem, R., Leblond, P., and Cullum, J. (1993) The Streptomyces lividans 66 chromosome contains a 1 Mb deletogenic region flanked by two amplifiable regions. Mol Gen Genet 241: 255-262.
30. Schneider, D., Aigle, B., Leblond, P., Simonet, J.-M., and Decaris, B. (1993) Analysis of genome instability in Streptomyces ambofaciens. J Gen Microbiol 139: 2559-2567.
31. Sedlmeier, R., and Altenbuchner, J. (1992) Cloning and DNA sequence analysis of the mercury resistance genes of Streptomyces lividans. Mol Gen Genet 236: 76-85.
32. Simon, R. (1984) High frequency mobilization of Gram-positive bacterial replicons by the in vitro constructed Tn5-Mob transposon. Mol Gen Genet 196: 413-420.
33. Smith, G.E., and Summers, M.D. (1980) The bidirectional transfer of DNA and RNA to nitrocellulose or diazobenzyloxymethyl-paper. Anal Biochem 109: 123-129.
34. Studier, F.W., Rosenberg, A.H., Dunn, J.J., and Dubendorf, J.W. (1990) Use of T7 RNA polymerase to direct expression of cloned genes. Meth Enzymol 185: 60-89.
35. Thompson, C.J., Ward, J.M., and Hopwood, D.A. (1980) DNA cloning in Streptomyces: resistance genes from antibiotic producing species. Nature 286: 525-527.
36. Volff, J.-N., Vandewiele, D., Simonet, J.-M., and Decaris, B. (1993a) Ultraviolet light, mitomycin C and nitrous acid induce genetic instability in Streptomyces ambofaciens ATCC23877. Mutation Res 287: 141-156.
37. Volff, J.-N., Vandewiele, D., Simonet, J.-M., and Decaris, B. (1993b) Stimulation of genetic instability in Streptomyces ambofaciens ATCC23877 by antibiotics that interact with DNA gyrase. J Gen Microbiol 139: 2251-2558.
38. Volff, J.-N., Vandewiele, D., and Decaris, B. (1994) Stimulation of genetic instability and associated large genomic rearrangements in Streptomyces ambofaciens by three fluoroquinolones. Antimicrob Agents Chemother 36: 1984-1990.
39. Watanabe, T., Suzuki, K., Oyanagi, W., Ohnishi, K., and Tanaka, H. (1990) Gene cloning of a chitinase A1 from Bacillus circulans WL-12 reveals its evolutionary relationship to Serratia chitinases and to the type III homology units of fibronectin. J Biol Chem 265: 15659-15665.
40. Watanabe, T., Kobori, K., Miyashita, K., Fujii, T., Sakai, H., Uchida, M., and Tanaka, H. (1993) Identification of glutamic acid 204 and aspartic acid 200 in chitinase A1 of Bacillus circulans WL-12 as essential residues for chitinase activity. J Biol Chem 268: 18567-18572.
41. Yanisch-Perron, C., Viera, J., and Messing, J. (1984) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103-109.
42. Young, M., and Cullum, J. (1987) A plausible mechanism for large-scale chromosomal amplification in streptomycetes. FEBS Lett 212: 10-14.