Nucleotide sequence diversity of hypervariable region 1 of hepatitis C virus in Japanese hemophiliacs with chronic hepatitis C and patients with chronic posttransfusion hepatitis C

Blood

Volumn 88, Issue 4, 1996, Pages 1488-1493

  Toyoda, Hidenori ^a   Fukuda, Yoshihide ^b   Koyama, Yasuo ^b   Nakano, Isao ^b   Kinoshita, Moritoshi ^b   Hadama, Toru ^b   Takamatsu, Junki ^b   Hayakawa, Tetsuo ^b  

^a NAGOYA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ADULT; ARTICLE; BLOOD TRANSFUSION; CHRONIC HEPATITIS; CLINICAL ARTICLE; ETHNIC GROUP; FEMALE; GENETIC VARIABILITY; HEMOPHILIA; HEPATITIS C; HEPATITIS C VIRUS; HUMAN; JAPAN; MALE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SINGLE STRAND CONFORMATION POLYMORPHISM; STRAIN DIFFERENCE; VIRUS GENE; VIRUS HEPATITIS; VIRUS TRANSMISSION;

EID: 0029794022     PISSN: 00064971     EISSN: None     Source Type: Journal    
DOI: 10.1182/blood.v88.4.1488.bloodjournal8841488     Document Type: Article

References (53)

1. Choo Q-L, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M: Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359, 1989
2. Weiner AJ, Kuo G, Bradley DW, Bonino F, Saracco G, Lee C, Rosenblatt J, Choo Q-L, Houghton M: Detection of hepatitis C viral sequences in non-A, non-B hepatitis. Lancet 335:1, 1990
3. Farci P, Alter HJ, Govindarajan S, Wong DC, Engle R, Lesniewski RR, Mushahwar IK, Desai SM, Miller RH, Ogata N, Purcell RH: Lack of protective immunity against reinfection with hepatitis C virus. Science 258:135, 1992
4. Prince AM, Brotman B, Huima T, Pascual D, Jaffery M, Inchauspe G: Immunity in hepatitis C infection. J Infect Dis 165:438, 1992
5. Kao J-H, Chen P-J, Lai M-Y, Chen D-S: Superinfection of heterologous hepatitis C virus in a patient with chronic type C hepatitis. Gastroenterology 105:583, 1993
6. Okamoto H, Mishiro S, Tokita H, Tsuda F, Miyakawa Y, Mayumi M: Superinfection of chimpanzees carrying hepatitis C virus of genotype II/1b with that of genotype III/2a or I/1a. Hepatology 20:1131, 1994
7. Isobe K, Imoto M, Fukuda Y, Koyama Y, Nakano I, Hayakawa T, Takamatsu J: Hepatitis C virus infection and genotypes in Japanese hemophiliacs. Liver 15:131, 1995
8. Preston FE, Jarvis LM, Makris M, Philp L, Underwood JCE, Ludlam CA, Simmonds P: Heterogeneity of hepatitis C virus genotypes in hemophilia: Relationship with chronic liver disease. Blood 85:1259, 1995
9. Shibata M, Morishima T, Kudo T, Maki T, Maki S, Nagai Y: Serum hepatitis C virus sequences in post-transfusion non-A, non-B hepatitis. Blood 77:1157, 1991
10. Okamoto H, Sugiyama Y, Okada S, Kurai K, Akahane Y, Sugai Y, Tanaka T, Sato K, Tsuda F, Miyakawa Y, Mayumi M: Typing hepatitis C virus by polymerase chain reaction with type-specific primers. An application to clinical surveys and tracing infection scores. J Gen Virol 73:673, 1992
11. Stuy ver L, Rossau R, Wyseur A, Duhamel M, Vanderborght B, Heuverswyn HV, Maertens G: Typing of hepatitis C virus isolates and characterization of new subtypes using a line probe assay. J Gen Virol 74:1093, 1993
12. Simmonds P, Alberti A, Alter HJ, Bonino F, Bradley DW, Brechot C, Brouwer JT, Chan S-W, Chayama K, Chen D-S, Choo Q-L, Colombo M, Cuypers HTM, Date T, Dusheiko GM, Esteban JI, Fay O, Hadziyannis SJ, Han J, Hatzakis A, Holmes EC, Hotta H, Houghton M, Irvine B, Kohara M, Kolberg JA, Kuo G, Lau JYN, Lelie PN, Maertens G, McOmish F, Miyamura T, Mizokami M, Nomoto A, Prince AM, Reesink HW, Rice C, Roggendorf M, Schalm SW, Shikata T, Shimotohno K, Stuyver L, Trepo C, Weiner A, Yap PL, Urdea M: A proposed system for the nomenclature of hepatitis C viral genotypes. Hepatology 19:1321, 1994
13. Chomczynski P, Sacchi N: Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156, 1987
14. Hagiwara H, Hayashi N, Mita E, Takehara T, Kasahara A, Fusamoto H, Kamada T: Quantitative analysis of hepatitis C virus in serum during interferon alpha therapy. Gastroenterology 104:877, 1993
15. Chayama K, Tsubota A, Arase Y, Saitoh S, Ikeda K, Sakai Y, Matsumoto T, Kobayashi M, Unakami M, Morinaga T, Kumada H: Quantitative analysis of hepatitis C virus RNA by competitive nested polymerase chain reaction. J Gastroenterol Hepatol 8:S40, 1993 (suppl)
16. Wang AM, Doyle MV, Mark DF: Quantitation of mRNA by the polymerase chain reaction. Proc Natl Acad Sci USA 86:9717, 1989
17. Gilliland G, Perrin S, Blanchard K, Bunn HF: Analysis of cytokine mRNA and DNA: Detection and quantitation by competitive polymerase chain reaction. Proc Natl Acad Sci USA 87:2725, 1990
18. Lau JYN, Davis GL, Kniffen J, Qian K-P, Urdea MS, Chan CS, Mizokami M, Neuwald PD, Wilber JC: Significance of serum hepatitis C virus RNA levels in chronic hepatitis C. Lancet 341:1501, 1993
19. Sanchez-Pescador R, Sheridan PJ, Detmer JJ, Hunt WP, Chan CS, Wright T, Okano A, Wilber JC, Neuwald PD, Urdea MS: Quantitative detection of HCV RNA in human sera using a chemoluminescent signal amplification oligonucleotide probe assay. Hepatology 16:588, 1992 (abstr)
20. Schulhof JC, Molko D, Teoule R: The final deprotection step in oligonucleotide synthesis is reduced to a mild and rapid ammonia treatment by using labile base-protecting groups. Nucleic Acid Res 15:397, 1987
21. Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning (ed 2). Cold Spring Harbor, NY, Cold Spring Harbor Laboratory, 1989, p 8.11
22. Kinoshita M, Hadama T, Yamakawa Y, Shin S, Chayama K, Kumada H: A detection method for mutations in the hypervariable region of HCV-RNA using the fluorescence-SSCP and -sequence analysis. Hepatology 20:365A, 1994 (abstr)
23. Orita M, Suzuki Y, Sekiya T, Hayashi K: Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics 5:874, 1989
24. Enomoto N, Kurosaki M, Tanaka Y, Marumo F, Sato C: Fluctuation of hepatitis C virus quasispecies in persistent infection and interferon treatment revealed by single-strand conformation polymorphism analysis. J Gen Virol 75:1361, 1994
25. Makino R, Yazyu H, Kishimoto Y, Sekiya T, Hayashi K: F-SSCP: Fluorescence-based polymerase chain reaction-single-strand conformation polymorphism (PCR-SSCP) analysis. PCR Methods Applic 2:10, 1992
26. Hultman T, Stahl S, Homes E, Uhlen M: Direct solid phase sequencing of genomic and plasmid DNA using magnetic beads as solid support. Nucleic Acid Res 17:4937, 1989
27. Sanger F, Nicklen S, Coulson AR: DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463, 1977
28. Bachmann B, Luke W, Hunsmann G: Improvement of PCR amplified DNA sequencing with the aid of detergents. Nucleic Acid Res 18:1309, 1990
29. Steinhauer DA, Holland JJ: Rapid evolution of RNA viruses. Annu Rev Microbiol 41:409, 1987
30. Holland JJ, de la Torre JC, Steinhauer DA: RNA virus populations as quasispecies. Curr Top Microbiol Immunol 176:1, 1992
31. Domingo E, Martinez-Salas E, Sobrino F, de la Torre JC, Portela A, Ortin J, Lopez-Galindez C, Perez-Brena P, Villanueva N, Najera R, VandePol S, Steinhauer D, DePolo N, Holland J: The quasispecies (extremely heterogenous) nature of viral RNA genome populations: Biological relevance-A review. Gene 40:1, 1985
32. Bilsel PA, Nichol ST: Polymerase errors accumulating during natural evolution of the glycoprotein gene of vesicular stomatitis virus Indiana serotype isolates. J Virol 64:4873, 1990
33. Kato N, Hijikata M, Ootsuyama Y, Nakagawa M, Ohkoshi S, Sugimura T, Shimotohno K: Molecular cloning of the human hepatitis C virus genome from Japanese patients with non-A, non-B hepatitis. Proc Natl Acad Sci USA 87:9524, 1990
34. Takamizawa A, Mon C, Fuke I, Manabe S, Murakami S, Fujita J, Onishi E, Andoh T, Yoshida I, Okayama H: Structure and organization of the hepatitis C virus genome isolated from human carriers. J Virol 65:1105, 1991
35. Choo Q-L, Richman KH, Han JH, Berger K, Lee C, Dong C, Gallegos C, Coit D, Medina-Selby A, Barr PJ, Weiner AJ, Bradley DW, Kuo G, Houghton M: Genetic organization and diversity of the hepatitis C virus. Proc Natl Acad Sci USA 88:2451, 1991
36. Oshima M, Tsuchiya M, Yagasaki M, Orita T, Hasegawa M, Tomonoh K, Kojima T, Hirata Y, Yamamoto O, Sho Y, Maeda E, Arima T: cDNA clones of Japanese hepatitis C virus genomes derived from a single patient show sequence heterogeneity. J Gen Virol 72:2805, 1991
37. Martell M, Esteban JI, Quer J, Genesca J, Weiner A, Esteban R, Guardia J, Gomez J: Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: Quasispecies nature of HCV genome distribution. J Virol 66:3225, 1992
38. Murakawa K, Esumi M, Kato T, Kambara H, Shikata T: Heterogeneity within the nonstructural protein 5-encoding region of hepatitis C viruses from a single patient. Gene 117:229, 1992
39. Weiner AJ, Geysen HM, Christopherson C, Hall JE, Mason TJ, Saracco O, Bonino F, Crawford K, Marion CD, Crawford KA, Brunetto M, Barr PJ, Miyamura T, McHutchinson J, Houghton M: Evidence for immune selection of hepatitis C virus putative envelope glycoprotein variants: Potential role in chronic HCV infections. Proc Natl Acad Sci USA 89:3468, 1992
40. Zonaro A, Ravaggi A, Puoti M, Kremsdorf D, Albertini A, Cariani E: Differential pattern of sequence heterogeneity in the hepatitis C virus E1 and E2/NS1 proteins. J Hepatol 21:858, 1994
41. Honda M, Kaneko S, Sakai A, Unoura M, Murakami S, Kobayashi K: Degree of diversity of hepatitis C virus quasispecies and progression of liver disease. Hepatology 20:1144, 1994
42. Koizumi K, Enomoto N, Kurosaki M, Murakami T, Izumi N, Marumo F, Sato C: Diversity of quasispecies in various disease stages of chronic hepatitis C virus infection and its significance in interferon treatment. Hepatology 22:30, 1995
43. Okada S, Akahane Y, Suzuki H, Okamoto H, Mishiro S: The degree of variability in the amino terminal region of the E2/NS1 protein of hepatitis C virus correlates with responsiveness to interferon therapy in viremic patients. Hepatology 16:619, 1992
44. Kanazawa Y, Hayashi N, Mita E, Li T, Hagiwara H, Kasahara A, Fusamoto H, Kamada T: Influence of viral quasispecies on effectiveness of interferon therapy in chronic hepatitis C patients. Hepatology 20:1121, 1994
45. Moribe T, Hayashi N, Kanazawa Y, Mita E, Fusamoto H, Negi M, Kaneshige T, Igimi H, Kamada T, Uchida K: Hepatitis C viral complexity detected by single-strand conformation polymorphism and response to interferon therapy. Gastroenterology 108:789, 1995
46. Kato N, Ootsuyama Y, Tanaka T, Nakagawa M, Muraiso K, Ohkoshi S, Hijikata M, Shimotohno K: Marked sequence diversity in the putative envelope proteins of hepatitis C virus. Virus Res 22:107, 1992
47. Kato N, Ootsuyama Y, Ohkoshi S, Nakazawa T, Sekiya H, Hijikata M, Shimotohno K: Characterization of hypervariable regions in the putative envelope protein of hepatitis C virus. Biochem Biophys Res Commun 189:119, 1992
48. Okamoto H, Kojima M, Okada S, Yoshizawa H, Iizuka H, Tanaka T, Muchmore EE, Peterson DA, Ito Y, Mishiro S: Genetic drift of hepatitis C virus during an 8.2-year infection in a chimpanzee: Variability and stability. Virology 190:894, 1992
49. Ogata N, Alter HJ, Miller RH, Purcell RH: Nucleotide sequence and mutation rate of H strain of hepatitis C virus. Proc Natl Acad Sci USA 88:3392, 1991
50. Enomoto N, Sakamoto N, Kurosaki M, Marumo F, Sato C: The hypervariable region of the HCV genome changes sequentially during the progression of acute HCV infection to chronic hepatitis. J Hepatol 17:415, 1993
51. Kurosaki M, Enomoto N, Marumo F, Sato C: Rapid sequence variation of the hypervariable region of hepatitis C virus during the course of chronic infection. Hepatology 18:1293, 1993
52. Enomoto N, Sato C, Kurosaki M, Marumo F: Hepatitis C virus after interferon treatment has the variation in the hypervariable region of envelope 2 gene. J Hepatol 20:252, 1994
53. Kato N, Sekiya H, Ootsuyama Y, Nakazawa T, Hijikata M, Ohkoshi S, Shimotohno K: Humoral immune response to hypervariable region 1 of the putative envelope glycoprotein (gp70) of hepatitis C virus. J Virol 67:3923, 1993