메뉴 건너뛰기




Volumn 16, Issue 10, 1996, Pages 5433-5443

Analyses of promoter-proximal pausing by RNA polymerase II on the hsp70 heat shock gene promoter in a Drosophila nuclear extract

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA AMANITIN; CELL EXTRACT; HEAT SHOCK PROTEIN; HISTONE H3; PERMANGANATE POTASSIUM; RNA POLYMERASE II;

EID: 0029791353     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.10.5433     Document Type: Article
Times cited : (41)

References (45)
  • 1
    • 0028969391 scopus 로고
    • Regulation of transcriptional elongation by RNA polymerase II
    • Bentley, D. L. 1995. Regulation of transcriptional elongation by RNA polymerase II. Curr. Opin. Genet. Dev. 5:210-216.
    • (1995) Curr. Opin. Genet. Dev. , vol.5 , pp. 210-216
    • Bentley, D.L.1
  • 2
    • 0024276891 scopus 로고
    • Transcription factors that activate the Ultrabithorax promoter in developmentally staged extracts
    • Biggin, M. D., and R. Tjian. 1988. Transcription factors that activate the Ultrabithorax promoter in developmentally staged extracts. Cell 53:699-711.
    • (1988) Cell , vol.53 , pp. 699-711
    • Biggin, M.D.1    Tjian, R.2
  • 3
    • 0000669319 scopus 로고
    • New perspectives on RNA chain elongation and termination by E. coli RNA polymerase
    • R. C. Conaway and J. W. Conaway (ed.), Raven Press, New York
    • Chan, C. L., and R. Landick. 1994. New perspectives on RNA chain elongation and termination by E. coli RNA polymerase, p. 297-321. In R. C. Conaway and J. W. Conaway (ed.), Transcription mechanisms and regulation. Raven Press, New York.
    • (1994) Transcription Mechanisms and Regulation , pp. 297-321
    • Chan, C.L.1    Landick, R.2
  • 4
    • 0027772890 scopus 로고
    • Eukaryotic activators function during multiple steps of preinitiation complex assembly
    • Choy, B., and M. R. Green. 1993. Eukaryotic activators function during multiple steps of preinitiation complex assembly. Nature (London) 366:531-536.
    • (1993) Nature (London) , vol.366 , pp. 531-536
    • Choy, B.1    Green, M.R.2
  • 5
    • 0025726420 scopus 로고
    • Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription
    • Croston, G. E., L. A. Kerrigan, L. M. Lira, D. R. Marshak, and J. T. Kadonaga. 1991. Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription. Science 251:643-649.
    • (1991) Science , vol.251 , pp. 643-649
    • Croston, G.E.1    Kerrigan, L.A.2    Lira, L.M.3    Marshak, D.R.4    Kadonaga, J.T.5
  • 6
    • 0027255450 scopus 로고
    • TFIID recognizes DNA sequences downstream of the TATA element in the hsp 70 heat shock gene
    • Emanuel, P. A., and D. S. Gilmour. 1993. TFIID recognizes DNA sequences downstream of the TATA element in the hsp 70 heat shock gene. Proc. Natl. Acad. Sci. USA 90:8449-8453.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 8449-8453
    • Emanuel, P.A.1    Gilmour, D.S.2
  • 7
    • 0027443464 scopus 로고
    • Polymerase processivity and termination on Drosophila heat shock genes
    • Giardina, C., and J. T. Lis. 1993. Polymerase processivity and termination on Drosophila heat shock genes. J. Biol. Chem. 268:23806-23811.
    • (1993) J. Biol. Chem. , vol.268 , pp. 23806-23811
    • Giardina, C.1    Lis, J.T.2
  • 8
    • 0026440184 scopus 로고
    • Promoter melting and TFIID complexes on Drosophila genes in vivo
    • Giardina, C., M. Perez-Riba, and J. T. Lis. 1992. Promoter melting and TFIID complexes on Drosophila genes in vivo. Genes Dev. 6:2190-2200.
    • (1992) Genes Dev. , vol.6 , pp. 2190-2200
    • Giardina, C.1    Perez-Riba, M.2    Lis, J.T.3
  • 9
    • 0023409212 scopus 로고
    • Protein-DNA cross-linking reveals dramatic variation in RNA polymerase II density on different histone repeats of Drosophila melanogaster
    • Gilmour, D. S., and J. T. Lis. 1987. Protein-DNA cross-linking reveals dramatic variation in RNA polymerase II density on different histone repeats of Drosophila melanogaster. Mol. Cell. Biol. 7:3341-3344.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 3341-3344
    • Gilmour, D.S.1    Lis, J.T.2
  • 10
    • 0024453603 scopus 로고
    • Drosophila nuclear proteins bind to regions of alternating C and T residues in gene promoters
    • Gilmour, D. S., G. H. Thomas, and S. C. R. Elgin. 1989. Drosophila nuclear proteins bind to regions of alternating C and T residues in gene promoters. Science 245:1487-1490.
    • (1989) Science , vol.245 , pp. 1487-1490
    • Gilmour, D.S.1    Thomas, G.H.2    Elgin, S.C.R.3
  • 11
    • 0018678957 scopus 로고
    • Alpha-amanitin-resistant D. melanogaster with an altered RNA polymerase II
    • Greenleaf, A. L., L. M. Borsett, P. F. Jiamachello, and D. E. Coulter. 1979. Alpha-amanitin-resistant D. melanogaster with an altered RNA polymerase II. Cell 8:613-622.
    • (1979) Cell , vol.8 , pp. 613-622
    • Greenleaf, A.L.1    Borsett, L.M.2    Jiamachello, P.F.3    Coulter, D.E.4
  • 12
    • 0025746676 scopus 로고
    • Abortive initiation is increased only for the weakest members of a set of down mutants of the adenovirus 2 major late promoter
    • Jacob, G. A., S. W. Luse, and D. S. Luse. 1991. Abortive initiation is increased only for the weakest members of a set of down mutants of the adenovirus 2 major late promoter. J. Biol. Chem. 266:22537-22544.
    • (1991) J. Biol. Chem. , vol.266 , pp. 22537-22544
    • Jacob, G.A.1    Luse, S.W.2    Luse, D.S.3
  • 13
    • 0025312046 scopus 로고
    • Assembly and disassembly of the Drosophila RNA polymerase II complex during transcription
    • Kadonaga, J. T. 1990. Assembly and disassembly of the Drosophila RNA polymerase II complex during transcription. J. Biol. Chem. 265:2624-2631.
    • (1990) J. Biol. Chem. , vol.265 , pp. 2624-2631
    • Kadonaga, J.T.1
  • 14
    • 0028924386 scopus 로고
    • Promoter-proximal pausing of RNA polymerase II defines a general rate limiting step after transcription initiation
    • Krumm, A., L. B. Hickey, and M. Groudine. 1995. Promoter-proximal pausing of RNA polymerase II defines a general rate limiting step after transcription initiation. Genes Dev. 9:559-572.
    • (1995) Genes Dev. , vol.9 , pp. 559-572
    • Krumm, A.1    Hickey, L.B.2    Groudine, M.3
  • 15
    • 0027674020 scopus 로고
    • Common mechanisms for the control of euckaryotic transcriptional elongation
    • Krumm, A., T. Meulia, and M. Groudine. 1993. Common mechanisms for the control of euckaryotic transcriptional elongation. Bioessays 15:659-665.
    • (1993) Bioessays , vol.15 , pp. 659-665
    • Krumm, A.1    Meulia, T.2    Groudine, M.3
  • 16
    • 0026513698 scopus 로고
    • DNA sequence requirements for generating paused polymerase at the start of hsp70
    • Lee, H., K. W. Kraus, M. F. Wolfner, and J. T. Lis. 1992. DNA sequence requirements for generating paused polymerase at the start of hsp70. Genes Dev. 60:284-295.
    • (1992) Genes Dev. , vol.60 , pp. 284-295
    • Lee, H.1    Kraus, K.W.2    Wolfner, M.F.3    Lis, J.T.4
  • 17
    • 0025893167 scopus 로고
    • Lac repressor acts by modifying the initial transcribing complex so that it cannot leave the promoter
    • Lee, J., and A. Goldfarb. 1991. lac repressor acts by modifying the initial transcribing complex so that it cannot leave the promoter. Cell 66:793-798.
    • (1991) Cell , vol.66 , pp. 793-798
    • Lee, J.1    Goldfarb, A.2
  • 18
    • 0017584322 scopus 로고
    • The organization of the histone genes in Drosophila melanogaster: Functional and evolutionary implications
    • Lifton, R. P., M. L. Goldberg, R. W. Karp, and D. S. Hogness. 1978. The organization of the histone genes in Drosophila melanogaster: functional and evolutionary implications. Cold Spring Harbor Symp. Quant. Biol. 42: 1047-1051.
    • (1978) Cold Spring Harbor Symp. Quant. Biol. , vol.42 , pp. 1047-1051
    • Lifton, R.P.1    Goldberg, M.L.2    Karp, R.W.3    Hogness, D.S.4
  • 19
    • 0027220589 scopus 로고
    • Protein traffic on the heat shock promoter: Parking, stalling and trucking along
    • Lis, J., and C. Wu. 1993. Protein traffic on the heat shock promoter: parking, stalling and trucking along. Cell 74:1-4.
    • (1993) Cell , vol.74 , pp. 1-4
    • Lis, J.1    Wu, C.2
  • 20
    • 0026725368 scopus 로고
    • Control of formation of two distinct classes of RNA polymerase II elongation complexes
    • Marshall, N. F., and D. H. Price. 1992. Control of formation of two distinct classes of RNA polymerase II elongation complexes. Mol. Cell. Biol. 12: 2078-2090.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 2078-2090
    • Marshall, N.F.1    Price, D.H.2
  • 21
    • 0002655777 scopus 로고
    • Ligation-mediated PCR for genomic sequencing and footprinting, unit 15.5
    • F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), John Wiley & Sons, Inc., New York
    • Mueller, P. R., P. A. Garrity, and B. Wold. 1994. Ligation-mediated PCR for genomic sequencing and footprinting, unit 15.5. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology on CD-ROM. John Wiley & Sons, Inc., New York.
    • (1994) Current Protocols in Molecular Biology on CD-ROM
    • Mueller, P.R.1    Garrity, P.A.2    Wold, B.3
  • 22
    • 0028305843 scopus 로고
    • Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation
    • O'Brien, T., S. Hardin, A. Greenleaf, and J. T. Lis. 1994. Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation. Nature (London) 370:75-77.
    • (1994) Nature (London) , vol.370 , pp. 75-77
    • O'Brien, T.1    Hardin, S.2    Greenleaf, A.3    Lis, J.T.4
  • 23
    • 0027157980 scopus 로고
    • Rapid changes in Drosophila transcription after an instantaneous heat shock
    • O'Brien, T., and J. T. Lis. 1993. Rapid changes in Drosophila transcription after an instantaneous heat shock. Mol. Cell. Biol. 13:3456-3463.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 3456-3463
    • O'Brien, T.1    Lis, J.T.2
  • 24
    • 0029042691 scopus 로고
    • Distribution of GAGA protein on Drosophila genes in vivo
    • O'Brien, T., R. C. Wilkins, C. Giardina, and J. T. Lis. 1995. Distribution of GAGA protein on Drosophila genes in vivo. Genes Dev. 9:1098-1110.
    • (1995) Genes Dev. , vol.9 , pp. 1098-1110
    • O'Brien, T.1    Wilkins, R.C.2    Giardina, C.3    Lis, J.T.4
  • 25
    • 0023644613 scopus 로고
    • Fractionation of transcription factors for RNA polymerase II from Drosophila Kc cell nuclear extracts
    • Price, D. H., A. E. Sluder, and A. L. Greenleaf. 1987. Fractionation of transcription factors for RNA polymerase II from Drosophila Kc cell nuclear extracts. J. Biol. Chem. 262:3244-3255.
    • (1987) J. Biol. Chem. , vol.262 , pp. 3244-3255
    • Price, D.H.1    Sluder, A.E.2    Greenleaf, A.L.3
  • 26
    • 0028201744 scopus 로고
    • TFIID sequence-recognition of the initiator and sequences further downstream in Drosophila class II genes
    • Purnell, B. A., P. A. Emanuel, and D. S. Gilmour. 1994. TFIID sequence-recognition of the initiator and sequences further downstream in Drosophila class II genes. Genes Dev. 8:830-842.
    • (1994) Genes Dev. , vol.8 , pp. 830-842
    • Purnell, B.A.1    Emanuel, P.A.2    Gilmour, D.S.3
  • 27
    • 0027166316 scopus 로고
    • In vivo transcriptional pausing and cap formation on the three Drosophila heat shock genes
    • Rasmussen, E. B., and J. T. Lis. 1993. In vivo transcriptional pausing and cap formation on the three Drosophila heat shock genes. Proc. Natl. Acad. Sci. USA 90:7923-7927.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7923-7927
    • Rasmussen, E.B.1    Lis, J.T.2
  • 28
    • 0029163040 scopus 로고
    • Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing
    • Rasmussen, E. B., and J. T. Lis. 1995. Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing. J. Mol. Biol. 252:522-535.
    • (1995) J. Mol. Biol. , vol.252 , pp. 522-535
    • Rasmussen, E.B.1    Lis, J.T.2
  • 29
    • 0024282827 scopus 로고
    • The RNA polymerase II molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged
    • Rougvie, A. E., and J. T. Lis. 1988. The RNA polymerase II molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell 54:795-804.
    • (1988) Cell , vol.54 , pp. 795-804
    • Rougvie, A.E.1    Lis, J.T.2
  • 30
    • 0025166038 scopus 로고
    • Postinitiation translational control in Drosophila melanogaster
    • Rougvie, A. E., and J. T. Lis. 1990. Postinitiation translational control in Drosophila melanogaster. Mol. Cell. Biol. 10:6041-6045.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 6041-6045
    • Rougvie, A.E.1    Lis, J.T.2
  • 31
    • 0019945644 scopus 로고
    • Genetic transformation of Drosophila with transposable element vectors
    • Rubin, G., and A. C. Spradling. 1982. Genetic transformation of Drosophila with transposable element vectors. Science 218:348-353.
    • (1982) Science , vol.218 , pp. 348-353
    • Rubin, G.1    Spradling, A.C.2
  • 33
    • 0028221237 scopus 로고
    • Protein/DNA crosslinking of a TFIID complex reveals novel interactions downstream of the transcription start
    • Sypes, M. A., and D. S. Gilmour. 1994. Protein/DNA crosslinking of a TFIID complex reveals novel interactions downstream of the transcription start. Nucleic Acids Res. 22:807-814.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 807-814
    • Sypes, M.A.1    Gilmour, D.S.2
  • 34
    • 0028055116 scopus 로고
    • ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor
    • Tsukiyama, T., P. B. Becker, and C. Wu. 1994. ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor. Nature (London) 367:525-532.
    • (1994) Nature (London) , vol.367 , pp. 525-532
    • Tsukiyama, T.1    Becker, P.B.2    Wu, C.3
  • 35
    • 0026715819 scopus 로고
    • Specific interaction between the nonphosphorylated form of RNA polymerase II and the TATA-binding protein
    • Usheva, A., E. Maldonado, A. Goldring, H. Lu, C. Houbavi, D. Reinberg, and Y. Aloni. 1992. Specific interaction between the nonphosphorylated form of RNA polymerase II and the TATA-binding protein. Cell 69:871-881.
    • (1992) Cell , vol.69 , pp. 871-881
    • Usheva, A.1    Maldonado, E.2    Goldring, A.3    Lu, H.4    Houbavi, C.5    Reinberg, D.6    Aloni, Y.7
  • 36
    • 0029055811 scopus 로고
    • Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II
    • Verrijzer, C. P., J.-L. Chen, K. Yokomori, and R. Tjian. 1995. Binding of TAFs to core elements directs promoter selectivity by RNA polymerase II. Cell 81:1115-1125.
    • (1995) Cell , vol.81 , pp. 1115-1125
    • Verrijzer, C.P.1    Chen, J.-L.2    Yokomori, K.3    Tjian, R.4
  • 37
    • 0029053911 scopus 로고
    • Chromatin remodeling by GAGA factor and heat shock factor at the hypersensitive Drosophila hsp26 promoter in vitro
    • Wall, G., P. D. Varga-Weisz, R. Sandaltzopoulos, and P. B. Becker. 1995. Chromatin remodeling by GAGA factor and heat shock factor at the hypersensitive Drosophila hsp26 promoter in vitro. EMBO J. 14:1727-1736.
    • (1995) EMBO J. , vol.14 , pp. 1727-1736
    • Wall, G.1    Varga-Weisz, P.D.2    Sandaltzopoulos, R.3    Becker, P.B.4
  • 38
    • 0026577264 scopus 로고
    • Polymerase II promoter activation: Closed complex formation and ATP-driven start site opening
    • Wang, W., M. Carey, and J. D. Gralla. 1992. Polymerase II promoter activation: closed complex formation and ATP-driven start site opening. Science 255:450-453.
    • (1992) Science , vol.255 , pp. 450-453
    • Wang, W.1    Carey, M.2    Gralla, J.D.3
  • 39
    • 0026658685 scopus 로고
    • The acidic activator GAL4-AH can stimulate polymerase II transcription by promoting assembly of a closed complex requiring TFIID and TFIIA
    • Wang, W., J. D. Gralla, and M. Carey. 1992. The acidic activator GAL4-AH can stimulate polymerase II transcription by promoting assembly of a closed complex requiring TFIID and TFIIA. Genes Dev. 6:1716-1727.
    • (1992) Genes Dev. , vol.6 , pp. 1716-1727
    • Wang, W.1    Gralla, J.D.2    Carey, M.3
  • 40
    • 0029129303 scopus 로고
    • Genomic footprinting of the hsp70 and histone H3 promoters in Drosophila embryos reveal novel protein-DNA interactions
    • Weber, J. A., and D. S. Gilmour. 1995. Genomic footprinting of the hsp70 and histone H3 promoters in Drosophila embryos reveal novel protein-DNA interactions. Nucleic Acids Res. 23:3327-3334.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3327-3334
    • Weber, J.A.1    Gilmour, D.S.2
  • 41
    • 0027135208 scopus 로고
    • Locus-specific variation in phosphorylation state of RNA polymerase II in vivo: Correlations with gene activity and transcript processing
    • Weeks, J. R., S. E. Hardin, J. Shen, J. M. Lee, and A. L. Greenleaf. 1993. Locus-specific variation in phosphorylation state of RNA polymerase II in vivo: correlations with gene activity and transcript processing. Genes Dev. 7:2329-2344.
    • (1993) Genes Dev. , vol.7 , pp. 2329-2344
    • Weeks, J.R.1    Hardin, S.E.2    Shen, J.3    Lee, J.M.4    Greenleaf, A.L.5
  • 42
    • 0023666534 scopus 로고
    • Purification and properties of Drosophila heat shock activator protein
    • Wu, C., S. Wilson, B. Walker, I. Dawid, T. Paisley, V. Zimarino, and H. Ueda. 1987. Purification and properties of Drosophila heat shock activator protein. Science 238:1247-1253.
    • (1987) Science , vol.238 , pp. 1247-1253
    • Wu, C.1    Wilson, S.2    Walker, B.3    Dawid, I.4    Paisley, T.5    Zimarino, V.6    Ueda, H.7
  • 43
    • 0027960539 scopus 로고
    • A highly conserved domain of RNA polymerase II shares a functional element with acidic activation domains of upstream transcription factors
    • Xiao, H., J. D. Friesen, and J. T. Lis. 1994. A highly conserved domain of RNA polymerase II shares a functional element with acidic activation domains of upstream transcription factors. Mol. Cell. Biol. 14:7507-7516.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 7507-7516
    • Xiao, H.1    Friesen, J.D.2    Lis, J.T.3
  • 44
    • 0025286034 scopus 로고
    • The carboxyl-terminal repeat domain of RNA polymerase II is not required for transcription factor Sp1 to function in vitro
    • Zehring, W. A., and A. L. Greenleaf. 1990. The carboxyl-terminal repeat domain of RNA polymerase II is not required for transcription factor Sp1 to function in vitro. J. Biol. Chem. 265:8351-8353.
    • (1990) J. Biol. Chem. , vol.265 , pp. 8351-8353
    • Zehring, W.A.1    Greenleaf, A.L.2
  • 45
    • 0024022636 scopus 로고
    • The C-terminal repeat domain of RNA polymerase II largest subunit is essential in vivo but is not required for accurate transcription initiation in vitro
    • Zehring, W. A., J. M. Lee, J. R. Weeks, R. S. Jokerst, and A. L. Greenleaf. 1988. The C-terminal repeat domain of RNA polymerase II largest subunit is essential in vivo but is not required for accurate transcription initiation in vitro. Proc. Natl. Acad. Sci. USA 85:3698-3702.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 3698-3702
    • Zehring, W.A.1    Lee, J.M.2    Weeks, J.R.3    Jokerst, R.S.4    Greenleaf, A.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.