Mechanism of aldehyde oxidation catalyzed by horse liver alcohol dehydrogenase

Biochemistry

Volumn 35, Issue 30, 1996, Pages 9782-9791

  Olson, Leif P ^a   Luo, Jia ^a   Almarsson, Örn ^a   Bruice, Thomas C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DEHYDROGENASE; ALDEHYDE; BENZALDEHYDE; BENZOIC ACID; NICOTINAMIDE ADENINE DINUCLEOTIDE;

ARTICLE; CATALYSIS; CRYSTAL STRUCTURE; ENZYME CONFORMATION; HYDROGEN BOND; MOLECULAR DYNAMICS; OXIDATION; PRIORITY JOURNAL; PROTON TRANSPORT; X RAY CRYSTALLOGRAPHY;

ALCOHOL DEHYDROGENASE; ALDEHYDES; ANIMALS; BINDING SITES; CALORIMETRY; HORSES; HYDROGEN BONDING; KINETICS; LIGANDS; LIVER; MODELS, MOLECULAR; MOLECULAR CONFORMATION; NAD; OXIDATION-REDUCTION; SOFTWARE; ZINC;

EID: 0029785756     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi952020x     Document Type: Article

References (49)

1. Abeles, R. H., & Lee, H. A., Jr. (1960) J. Biol. Chem. 235, 1499-1503.
2. Almarsson, Ö., & Bruice, T. C. (1993) J. Am. Chem. Soc. 115, 2125-2138.
3. Andrés, J., Safont, V. S., Martins, J. B. L., Beltrán, A., & Moliner, V. (1995) THEOCHEM 330, 411-416.
4. Bahnson, B. J., Park, D.-H., Kim, K., Plapp, B. V., & Klinman, J. P. (1993) Biochemistry 32, 5503-5507.
5. Bowden, K., El Kaissi, F. A., & Ranson, R. (1990) J. Chem. Soc., Perkin Trans. 2, 2089-2097.
6. Brändén, C. I., Jörnvall, H., Eklund, H., & Furugren, B. (1975) The Enzymes (Boyer, P. D., Ed.) 3rd ed., Vol. 11, p 103, Academic Press, New York.
7. Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., & Karplus, M. (1983) J. Comput. Chem. 4, 187-217.
8. Clement, O., Roszak, A. W., & Buncel, E. (1996) J. Am. Chem. Soc. 118, 612-620.
9. Corwin, D. T., Jr., & Koch, S. A. (1988) Inorg. Chem. 27, 493-496.
10. Cummins, P. L., & Gready, J. E. (1989) THEOCHEM 183, 161-174.
11. Cummins, P. L., & Gready, J. E. (1990) J. Comput. Chem. 11, 791-804.
12. Dalziel, K., & Dickinson, F. M. (1965) Nature 206, 255-257.
13. Derewenda, Z. S., Derewenda, U., & Kobos, P. M. (1994) J. Mol. Biol. 241, 83-93.
14. Derewenda, Z. S., Lee, L., & Derewenda, U. (1995) J. Mol. Biol. 252, 248-262.
15. Dewar, M. J. S., Zoebisch, E. G., Healy, E., & Stewart, J. J. P. (1985) J. Am. Chem. Soc. 107, 3902-3909.
16. Dworschack, R. T., & Plapp, B. V. (1977) Biochemistry 16, 2716-2725.
17. Eisses, K. T. (1989) Bioorg. Chem. 17, 268-274.
18. Eklund, H., Plapp, B. V., Samama, J.-P., & Brändén, C.-I. (1982) J. Biol. Chem. 23, 14349-14358.
19. Fárres, J., Wang, T. T. Y., Cunningham, S. J., & Weiner, H. (1995) Biochemistry 34, 2592-2598.
20. Gruff, E. S., & Koch, S. A. (1989) J. Am. Chem. Soc. 111, 8762-8763.
21. Hempel, J., Nicholas, H., & Lindahl, R. (1993) Protein Sci. 2, 1892-1900.
22. Henehan, G. T. M., & Oppenheimer, N. J. (1993) Biochemistry 32, 735-738.
23. Jorgensen, W. L., Chandrasekhar, J., & Madura, J. D. (1983) J. Chem. Phys. 79, 926-935.
24. Jurema, M. W., & Shields, G. C. (1993) J. Comput. Chem. 14, 89-104.
25. Klinman, J. P. (1981) Crit. Rev. Biochem. 10, 39-78.
26. Molecular Simulations, Inc. (1994) Quanta versions 3.3 and 4.0 software, Polygen/MSI Inc., Waltham, MA (currently, Biosym/MSI, San Diego, CA).
27. Olson, L. P., & Bruice, T. C. (1995) Biochemistry 34, 7335-7347.
28. Palmer, A. G., & Case, D. A. (1992) J. Am. Chem. Soc. 114, 9059-9067.
29. Raber, D. J., & Rodriguez, W. (1985) J. Am. Chem. Soc. 107, 4146-4147.
30. Ramaswamy, S., Eklund, H., & Plapp, B. V. (1994) Biochemistry 33, 5230-5237.
31. Ríos, M. A., & Rodríguez, J. (1992) J. Comput. Chem. 13, 860-866.
32. Ryde, U. (1994) Int. J. Quantum Chem. 52, 1229-1243.
33. Ryde, U. (1995) Proteins: Struct., Funct., Genet. 21, 40-56.
34. Schröder, S., Daggett, V., & Kollman, P. (1991) J. Am. Chem. Soc. 113, 8922-8925.
35. Semichem, Inc. (1994) Ampac 5.0, Semichem, 7128 Summit, Shawnee, KS 66216.
36. Shearer, G. L., Kim, K., Lee, K. M., Wang, C. K., & Plapp, B. V. (1993) Biochemistry 32, 11186-11194.
37. Stewart, J. J. P. (1989a) J. Comput. Chem. 10, 209-220.
38. Stewart, J. J. P. (1989b) J. Comput. Chem. 10, 221-264.
39. Stewart, J. J. P. (1991) J. Comput. Chem. 12, 320-341.
40. Tapia, O., Lamborelle, C., & Johannin, G. (1980) Chem. Phys. Lett. 72, 334-341.
41. Tapia, O., Brändén, C. I., & Armbruster, A. M. (1983) Quantum Theor. Chem. React. 3, 97-123.
42. Tapia, O., Cardenas, R., Andres, J., Krechl, J., Campillo, M., & Colonna-Cesari, F. (1991) Int. J. Quantum Chem. 39, 767-786.
43. van Gunsteren, W. F., & Berendsen, H. J. C. (1977) Mol. Phys. 34, 1311-1327.
44. von Onciul, A., & Clark, T. (1993) J. Comput. Chem. 4, 392-400.
45. Wang, X., & Weiner, H. (1995) Biochemistry 34, 237-243.
46. Wu, Y.-D., & Houk, K. N. (1991) J. Am. Chem. Soc. 113, 2353-2358.
47. Wu, Y.-D., & Houk, K. N. (1993) J. Org. Chem. 58, 2043-2045.
48. Wu, Y.-D., Lai, D. K. W., & Houk, K. N. (1995) J. Am. Chem. Soc. 117, 4100-4108.
49. Zheng, Y.-J., Merz, K. M., & Farber, G. K. (1993) Protein Eng. 6, 479-484.