Position-dependent protein mutant profile based on mean force field calculation

Protein Engineering

Volumn 9, Issue 6, 1996, Pages 479-484

  Wang, Yanli ^a   Lai, Luhua ^a   Li, Shuwei ^a   Han, Yuzhaen ^a   Tang, Youqi ^a  

^a Peking University   (China)

Author keywords

Inverse folding; Mean force field; Mutant profile; Polar fraction; Sequence structure alignment

Indexed keywords

AMINO ACID; MUTANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; FORCE; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN STRUCTURE;

EID: 0029785360     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/9.6.479     Document Type: Article

References (24)

1. Baumann, G., Frommel, C. and Sander, C. (1989) Protein Engng, 2, 329-334.
2. Bryant, S.H. and Lawrence, C.E. (1993) Proteins: Struct. Funct. Genet., 16, 92-112.
3. Crippen, G.M. (1991) Biochemistry, 30, 4232-4237.
4. Gobel, U., Sander, C., Schneider, R. and Valencia, A. (1984) Proteins: Struct. Funct. Genet., 18, 309-317.
5. Goödzik, A., Kolinski, A. and Skolnick, J. (1993a) J. Comput.-Aided Mol. Design., 7, 397-438.
6. Godzik, A., Skolnick, J. and Kolinski, A. (1993b) Protein Engng. 6, 801-810.
7. Hendlich, M., Lackner, P., Weitckus, S. Floeckner, H., Froschauer, R., Gottsbaker, K., Casari, G. and Sippl, M. (1990) J. Mol. Biol., 216, 167-180.
8. Jones, D. and Thornton, J. (1993) J. Comput.-Aided Mol. Design, 7, 439-456.
9. Jones, D.T., Taylor, W.R. and Thornton, J.M. (1992) Nature, 358, 86-89.
10. Kabsch, W. and Sander, C. (1983) Biopolymers, 22, 2577-2637.
11. Lee, B. and Richards, F.M. (1971) J.Mol.Biol., 55, 379-400.
12. Lin, L., Pinker, R.J., Phillips, G.N. and Kallenbach, N.R. (1994) Protein Sci., 3, 1430-1435.
13. Luthardt, G. and Frommel, C. (1994) Protein Engng, 7, 627-631.
14. Maiorov, V.N. and Crippen, G.M. (1994) Proteins: Struct. Funct. Genet., 20, 167-173.
15. Matsumura, M., Becktel, W.J. and Matthews, B.W. (1988) Nature, 334, 406-410.
16. Miyazawa, S. and Jernigan, R.L. (1994) Protein Engng, 7, 1209-1220.
17. Nishikawa, K. and Matsuo, Y. (1993) Protein Engng, 6, 811-820.
18. Qouzounis, C., Sander, C., Scharf, M. and Schneider, R. (1993) J. Mol. Biol., 232, 805-825.
19. Shindyalov, L.N., Kolchanov, N.A. and Sander, C. (1994) Protein Engng, 7, 349-358.
20. Sippl, M.J. (1990) J. Mol. Biol., 213, 859-883.
21. Sippl, M.J. (1993) J. Comput.-Aided Mol. Design, 7, 473-501.
22. Taylor, W.R. and Hatrick, K. (1994) Protein Engng, 7, 341-348.
23. Wang, Y., Lai, L., Han, Y., Xu, X. and Tang, Y. (1995) Proteins: Struct. Funct. Genet., 21, 127-129.
24. Yutani, K., Ogasahara, K., Tsujita, T. and Sugina, Y. (1987) Proc. Natl Acad. Sci. USA, 84, 4441-4444.