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Volumn 118, Issue 31, 1996, Pages 7402-7403

Isotope-labeling strategy for the assignment of protein fragments generated for mass spectrometry

Author keywords

[No Author keywords available]

Indexed keywords

LYSOZYME;

EID: 0029769671     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja9531236     Document Type: Article
Times cited : (13)

References (30)
  • 15
    • 9444240480 scopus 로고    scopus 로고
    • note
    • 2O at pH 3.8 to remove residual salts. All FTMS spectra were recorded on a Bruker Bio-APEX 47e spectrometer equipped with a 4.7 T magnet, external ion source, and electrospray source (Analytica of Branford, Branford, CT). Ions were accumulated in the FTMS trap for 300 ms, followed by chirp excitation and detection with a 240 kHz bandwidth. Parent multiply charged molecular ions of lysozyme were observed with a capillary skimmer potential of 60-100 V, while for CID spectra the capillary skimmer potential was increased to 160-250 V. Calibration was performed against a mixture of peptides.
  • 19
    • 9444243374 scopus 로고    scopus 로고
    • note
    • A library of fragments was computed from which to identify the closest possibilities for each of the observed ion masses. The program is implemented in Mathematica, can trace fragments through intact disulfides, and optionally allows disulfide cleavage. All fragments which include one or more cleavages of α-carbon-amide nitrogen, amide nitrogen-carbonyl carbon, or carbonyl carbon-α-carbon peptide backbone bonds are considered. In addition, all fragments in which one disulfide was cleaved at either the sulfur-sulfur or β-carbon-sulfur bond were also considered.
  • 24
    • 9444257647 scopus 로고    scopus 로고
    • note
    • On the basis of the assigned spectrum, an internal assessment of the mass accuracy of the instrument was found to be 8 ± 5 ppm.
  • 25
    • 9444270520 scopus 로고    scopus 로고
    • note
    • A peak assigned to an internal fragment in which both cleavages are at the peptide bond has identical mass and sequence to an assignment in which both cleavages are shifted by one bond toward the N or the C terminus of the polypeptide chain. These degenerate possibilities are ignored.
  • 30
    • 84987419408 scopus 로고
    • Roepstorff, P.; Fohlman, J. Biomed. Mass Spectrom. 1984, 11, 601. Nomenclature was extended to include disulfide breakage, s-. The subscript of s refers to the particular cysteine residue, while its superscript refers to the retained number of sulfur atoms. For fragments containing two peptides joined by an unbroken disulfide, superscripts to a-, b-, c- , x-, y-, and z-refer to the cysteine residue which forms the link. Charge is indicated for fragment ions whose charge is greater than +1. Primes indicate the number of hydrogen atoms added to the fragment and deviate from the established nomenclature in that they are always placed at the end of the fragment description. The possibility of charges localized on basic and/or acidic side chains precludes determination of whether charges are positioned at the cleavage site.
    • (1984) Biomed. Mass Spectrom. , vol.11 , pp. 601
    • Roepstorff, P.1    Fohlman, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.