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Volumn 240, Issue 3, 1996, Pages 721-731

Experimental verification of the secondary structures of guide RNA-pre-mRNA chimaeric molecules in Trypanosoma brucei

Author keywords

Chemicalen enzymatic modification; Guide RNA pre mRNA chimaera; Secondary structure; Trypanosoma brucei

Indexed keywords

ADENOSINE TRIPHOSPHATASE; GUIDE RNA;

EID: 0029766088     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1996.0721h.x     Document Type: Article
Times cited : (6)

References (43)
  • 1
    • 0029040510 scopus 로고
    • Sense from nonsense: RNA editing in mitochondria of kinetoplastid protozoa and slime molds
    • Simpson, L. & Thiemann, O. H. (1995) Sense from nonsense: RNA editing in mitochondria of kinetoplastid protozoa and slime molds, Cell 81, 837-840.
    • (1995) Cell , vol.81 , pp. 837-840
    • Simpson, L.1    Thiemann, O.H.2
  • 2
    • 0026919885 scopus 로고
    • RNA editing in trypanosomes
    • Benne, R. (1992) RNA editing in trypanosomes, Mol. Biol. Reports 16, 217-227.
    • (1992) Mol. Biol. Reports , vol.16 , pp. 217-227
    • Benne, R.1
  • 3
    • 0025824238 scopus 로고
    • Chimeric gRNA-mRNA molecules with oligo(U) tails covalently linked at sites of RNA editing suggest that U addition occurs by transesterification
    • Blum, B., Sturm, N. R., Simpson, A. M. & Simpson, L. (1991) Chimeric gRNA-mRNA molecules with oligo(U) tails covalently linked at sites of RNA editing suggest that U addition occurs by transesterification, Cell 65, 543-550.
    • (1991) Cell , vol.65 , pp. 543-550
    • Blum, B.1    Sturm, N.R.2    Simpson, A.M.3    Simpson, L.4
  • 4
    • 0026520094 scopus 로고
    • In vitro guide RNA/mRNA chimera formation in Trypanosoma brucei RNA editing
    • Koslowsky, D. J., Göringer, H. U., Morales, T. H. & Stuart, K. (1992) In vitro guide RNA/mRNA chimera formation in Trypanosoma brucei RNA editing, Nature 356, 807-809.
    • (1992) Nature , vol.356 , pp. 807-809
    • Koslowsky, D.J.1    Göringer, H.U.2    Morales, T.H.3    Stuart, K.4
  • 5
    • 0026553325 scopus 로고
    • Kinetoplastid RNA editing: In vitro formation of cytochrome b gRNA-mRNA chimeras from synthetic substrate RNAs
    • Harris, M. E. & Hajduk, S. L. (1992) Kinetoplastid RNA editing: in vitro formation of cytochrome b gRNA-mRNA chimeras from synthetic substrate RNAs, Cell 68, 1091-1099.
    • (1992) Cell , vol.68 , pp. 1091-1099
    • Harris, M.E.1    Hajduk, S.L.2
  • 6
    • 0027102742 scopus 로고
    • Formalion of guide RNA/messenger RNA chimeric molecules in vitro, the initial step of RNA editing, is dependent on an anchor sequence
    • Blum, B. & Simpson, L. (1992) Formalion of guide RNA/messenger RNA chimeric molecules in vitro, the initial step of RNA editing, is dependent on an anchor sequence, Proc. Natl Acad. Sci. USA 89, 11944-11948.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 11944-11948
    • Blum, B.1    Simpson, L.2
  • 7
    • 0028840508 scopus 로고
    • A possible role for the guide RNA U-tail as a specificity determinant in formation of guide RNA-messenger RNA chimeras in mitochondrial extracts of Crithidia fasciculata
    • Arts, G. J., Sloof, P. & Benne, R. (1995) A possible role for the guide RNA U-tail as a specificity determinant in formation of guide RNA-messenger RNA chimeras in mitochondrial extracts of Crithidia fasciculata, Mol. Biochem. Parasitol. 73, 211-222.
    • (1995) Mol. Biochem. Parasitol. , vol.73 , pp. 211-222
    • Arts, G.J.1    Sloof, P.2    Benne, R.3
  • 8
    • 0026546401 scopus 로고
    • Chimeric and truncated RNAs in Trypanosoma brucei suggest transesterifications at non-consecutive sites during RNA editing
    • Read, L. K., Corell, R. A. & Stuart, K. (1992) Chimeric and truncated RNAs in Trypanosoma brucei suggest transesterifications at non-consecutive sites during RNA editing, Nucleic Acid Res. 20, 2341-2347.
    • (1992) Nucleic Acid Res. , vol.20 , pp. 2341-2347
    • Read, L.K.1    Corell, R.A.2    Stuart, K.3
  • 9
    • 0027413859 scopus 로고
    • Implications of novel guide RNA features for the mechanism of RNA editing in Crithidia fasciculata
    • Arts, G. J., van der Spek, H., Spejer, D., van den Burg, J., van Steeg, H., Sloof, P. & Benne, R. (1993) Implications of novel guide RNA features for the mechanism of RNA editing in Crithidia fasciculata, EMBO J. 12, 1523-1532.
    • (1993) EMBO J. , vol.12 , pp. 1523-1532
    • Arts, G.J.1    Van Der Spek, H.2    Spejer, D.3    Van Den Burg, J.4    Van Steeg, H.5    Sloof, P.6    Benne, R.7
  • 10
    • 0026440995 scopus 로고
    • Native mRNA editing complexes from Trypanosoma brucei mitochondria
    • Pollard, V. W., Harris, M. E. & Hajduk, S. L. (1992) Native mRNA editing complexes from Trypanosoma brucei mitochondria, EMBO J. 11, 4429-4438.
    • (1992) EMBO J. , vol.11 , pp. 4429-4438
    • Pollard, V.W.1    Harris, M.E.2    Hajduk, S.L.3
  • 11
    • 0029005327 scopus 로고
    • Trypanosoma brucei mitochondrial guide RNA-mRNA chimera-forming activity cofractionates with an editing-domain specific endonuclease and RNA ligase and is mimicked by heterologous nuclease and RNA ligase
    • Piller, K. J., Decker, C. J., Rusché, L. N. & Sollner-Webb, B. (1995) Trypanosoma brucei mitochondrial guide RNA-mRNA chimera-forming activity cofractionates with an editing-domain specific endonuclease and RNA ligase and is mimicked by heterologous nuclease and RNA ligase, Mol. Cell. Biol. 15, 2925-2932.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2925-2932
    • Piller, K.J.1    Decker, C.J.2    Rusché, L.N.3    Sollner-Webb, B.4
  • 12
    • 0029061549 scopus 로고
    • Guide RNA-mRNA chimeras, which are potential RNA editing intermediates, are formed by endonuclease and RNA ligase in a Trypanosome mitochondrial extract
    • Rusché, L. N., Piller, K. J. & Sollner-Webb, B. (1995) Guide RNA-mRNA chimeras, which are potential RNA editing intermediates, are formed by endonuclease and RNA ligase in a Trypanosome mitochondrial extract, Mol. Cell. Biol. 15, 2933-2941.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2933-2941
    • Rusché, L.N.1    Piller, K.J.2    Sollner-Webb, B.3
  • 13
    • 0028968567 scopus 로고
    • RNA ligase and its involvement in guide RNA/mRNA chimera formation
    • Sabatini, R. & Hajduk, S. L. (1995) RNA ligase and its involvement in guide RNA/mRNA chimera formation, J. Biol. Chem. 270, 7233-7240.
    • (1995) J. Biol. Chem. , vol.270 , pp. 7233-7240
    • Sabatini, R.1    Hajduk, S.L.2
  • 14
    • 0028919944 scopus 로고
    • Quantitation of RNA editing substrates, products and potential intermediates: Implications for developmental regulation
    • Riley, G. R., Myler, P. J. & Stuart, K. (1995) Quantitation of RNA editing substrates, products and potential intermediates: implications for developmental regulation, Nucleic Acids Res. 23, 708-712.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 708-712
    • Riley, G.R.1    Myler, P.J.2    Stuart, K.3
  • 15
    • 0029942430 scopus 로고    scopus 로고
    • Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing
    • Seiwert, S. D., Heidmann, S. & Stuart, K. (1996) Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing, Cell 84, 831-841.
    • (1996) Cell , vol.84 , pp. 831-841
    • Seiwert, S.D.1    Heidmann, S.2    Stuart, K.3
  • 18
    • 0014725117 scopus 로고
    • Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides
    • Cantor C. R., Warshaw, M. M. & Shapiro, H. (1970) Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides, Biopolymers 9, 1059-1077.
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshaw, M.M.2    Shapiro, H.3
  • 19
    • 0024804759 scopus 로고
    • Absorbance melting curves of RNA
    • Puglisi, J. & Tinoco, I. (1989) Absorbance melting curves of RNA, Methods Enzymol. 180, 304-325.
    • (1989) Methods Enzymol. , vol.180 , pp. 304-325
    • Puglisi, J.1    Tinoco, I.2
  • 20
    • 0018877893 scopus 로고
    • Specific-labeling of 3′ termini of RNA wit T4 RNA ligase
    • England, T. E., Bruce, A. G. & Uhlenbeck, O. C. (1980) Specific-labeling of 3′ termini of RNA wit T4 RNA ligase, Methods Enzymol. 65, 65-74.
    • (1980) Methods Enzymol. , vol.65 , pp. 65-74
    • England, T.E.1    Bruce, A.G.2    Uhlenbeck, O.C.3
  • 22
    • 0028149364 scopus 로고
    • Evidence from CD spectra that d(purine) · r(pyrimidine) and r(purine) · d(pyrimidine) hybrids are in different structural classes
    • Hung, S.-H., Yu, Q., Gray, D. M. & Ratcliff, R. L. (1994) Evidence from CD spectra that d(purine) · r(pyrimidine) and r(purine) · d(pyrimidine) hybrids are in different structural classes, Nucleic Acids Res. 22, 4326-4334.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4326-4334
    • Hung, S.-H.1    Yu, Q.2    Gray, D.M.3    Ratcliff, R.L.4
  • 23
    • 0028272922 scopus 로고
    • The formation of mitochondrial ribonucleoprotein complexes involving guide RNA molecules in Trypanosoma brucei
    • Göringer, H. U., Koslowsky, D. J., Morales, T. H. & Stuart, K. (1994) The formation of mitochondrial ribonucleoprotein complexes involving guide RNA molecules in Trypanosoma brucei, Proc. Natl Acad. Sci. USA 91, 1776-1780.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 1776-1780
    • Göringer, H.U.1    Koslowsky, D.J.2    Morales, T.H.3    Stuart, K.4
  • 24
    • 0027942565 scopus 로고
    • RNA editing: Transfer of genetic information from gRNA to precursor mRNA in vitro
    • Seiwert, S. D. & Stuart K. (1994) RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro, Science 266, 114-117.
    • (1994) Science , vol.266 , pp. 114-117
    • Seiwert, S.D.1    Stuart, K.2
  • 25
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux, J., Haeberli, P. & Smithies, O. (1984) A comprehensive set of sequence analysis programs for the VAX, Nucleic Acids Res. 12, 387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 27
    • 0025731211 scopus 로고
    • A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison
    • Zuker, M., Jaeger, J. A. & Turner, D. H. (1991) A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison, Nucleic Acids Res. 19, 2702-2714.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 2702-2714
    • Zuker, M.1    Jaeger, J.A.2    Turner, D.H.3
  • 29
    • 0003156250 scopus 로고
    • Divalent metal ions in RNA folding and catalysis
    • (Gesteland, R. F. & Atkins, J. F, eds) Cold Spring Harbor Laboratory Press, Cold Spring Harbor NY
    • Pan, T., Long, D. M. & Uhlenbeck, O. C. (1993) Divalent metal ions in RNA folding and catalysis, in The RNA world (Gesteland, R. F. & Atkins, J. F, eds) pp. 271-302, Cold Spring Harbor Laboratory Press, Cold Spring Harbor NY.
    • (1993) The RNA World , pp. 271-302
    • Pan, T.1    Long, D.M.2    Uhlenbeck, O.C.3
  • 30
    • 0022973884 scopus 로고
    • On the recognition of helical RNA by cobra venom V1 nuclease
    • Lowman, H. B. & Draper, D. E. (1986) On the recognition of helical RNA by cobra venom V1 nuclease, J. Biol. Chem. 261, 5396-5403.
    • (1986) J. Biol. Chem. , vol.261 , pp. 5396-5403
    • Lowman, H.B.1    Draper, D.E.2
  • 31
    • 0028902990 scopus 로고
    • Structure of an RNA double helix including uracil-uracil base pairs in an internal loop
    • Baeyens, K. J., De Bondt, H. L. & Holbrook, S. R. (1995) Structure of an RNA double helix including uracil-uracil base pairs in an internal loop, Struct. Biol. 2, 56-62.
    • (1995) Struct. Biol. , vol.2 , pp. 56-62
    • Baeyens, K.J.1    De Bondt, H.L.2    Holbrook, S.R.3
  • 32
    • 0029044463 scopus 로고
    • Thermodynamics of RNA unfolding: Stabilization of a ribosomal RNA tertiary structure by thiostrepton and ammonium ion
    • Draper, D. E., Xing, Y. & Laing, L. G. (1995) Thermodynamics of RNA unfolding: stabilization of a ribosomal RNA tertiary structure by thiostrepton and ammonium ion, J. Mol. Biol. 249, 231-238.
    • (1995) J. Mol. Biol. , vol.249 , pp. 231-238
    • Draper, D.E.1    Xing, Y.2    Laing, L.G.3
  • 33
    • 84985665816 scopus 로고
    • Sequence dependence of the circular dichroism of synthetic double-stranded RNAs
    • Gray, D. M., Liu, J.-J., Ratliff, R. L. & Allen, F. S. (1981) Sequence dependence of the circular dichroism of synthetic double-stranded RNAs, Biopolymers 20, 1337-1382.
    • (1981) Biopolymers , vol.20 , pp. 1337-1382
    • Gray, D.M.1    Liu, J.-J.2    Ratliff, R.L.3    Allen, F.S.4
  • 35
    • 0025013450 scopus 로고
    • Circular dichroism studies of the HIV-1 Rev protein and its specific RNA binding site
    • Daly, T. J., Rusche, J. R., Maione, T. E. & Frankel, A. D. (1990) Circular dichroism studies of the HIV-1 Rev protein and its specific RNA binding site, Biochemistry 29, 9791-9795.
    • (1990) Biochemistry , vol.29 , pp. 9791-9795
    • Daly, T.J.1    Rusche, J.R.2    Maione, T.E.3    Frankel, A.D.4
  • 36
    • 0026441544 scopus 로고
    • Circular dichroism studies suggest that TAR RNA changes conformation upon specific binding of arginine or guanine
    • Tan, R. & Frankel, A. D. (1992) Circular dichroism studies suggest that TAR RNA changes conformation upon specific binding of arginine or guanine, Biochemistry 31, 10288-10294.
    • (1992) Biochemistry , vol.31 , pp. 10288-10294
    • Tan, R.1    Frankel, A.D.2
  • 37
    • 0028823341 scopus 로고
    • Identification of two novel arginine binding DNAs
    • Harada, K. & Frankel, A. D. (1995) Identification of two novel arginine binding DNAs, EMBO J. 14, 5798-5811.
    • (1995) EMBO J. , vol.14 , pp. 5798-5811
    • Harada, K.1    Frankel, A.D.2
  • 38
    • 0025946104 scopus 로고
    • Cycles of progressive realignment of gRNA with mRNA in RNA editing
    • Koslowsky, D. J., Bhat, G. J., Read, L. K. & Stuart, K. (1991) Cycles of progressive realignment of gRNA with mRNA in RNA editing, Cell 67, 537-546.
    • (1991) Cell , vol.67 , pp. 537-546
    • Koslowsky, D.J.1    Bhat, G.J.2    Read, L.K.3    Stuart, K.4
  • 39
    • 0029157052 scopus 로고
    • The secondary structure of guide RNA molecules from Trypanosoma brucei
    • Schmid, B., Riley, G., Stuart, K. & Göringer, H. U. (1995) The secondary structure of guide RNA molecules from Trypanosoma brucei, Nucleic Acids Res. 23, 3093-3102.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3093-3102
    • Schmid, B.1    Riley, G.2    Stuart, K.3    Göringer, H.U.4
  • 40
    • 0028352526 scopus 로고
    • Different Trypanosoma brucei guide RNA molecules associate with an identical complement of mitochondrial proteins in vitro
    • Köller, J., Nörskau, G., Paul, A. S., Stuart, K. & Göringer, H. U. (1994) Different Trypanosoma brucei guide RNA molecules associate with an identical complement of mitochondrial proteins in vitro, Nucleic Acids Res. 22, 1988-1995.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1988-1995
    • Köller, J.1    Nörskau, G.2    Paul, A.S.3    Stuart, K.4    Göringer, H.U.5
  • 41
    • 0028896484 scopus 로고
    • Identification by UV cross-linking of oligo(U)-binding proteins in mitochondria of the insect trypanosomatid Crithidia fasciculata
    • Leegwater, P., Spejer, D. & Benne, R. (1995) Identification by UV cross-linking of oligo(U)-binding proteins in mitochondria of the insect trypanosomatid Crithidia fasciculata, Eur. J. Biochem. 227, 780-786.
    • (1995) Eur. J. Biochem. , vol.227 , pp. 780-786
    • Leegwater, P.1    Spejer, D.2    Benne, R.3
  • 42
    • 0029030912 scopus 로고
    • Multicomponent complexes involved in kinetoplastid RNA editing
    • Göringer, H. U., Köller, J. & Shu, H. H. (1995) Multicomponent complexes involved in kinetoplastid RNA editing, Parasitol. Today 11, 265-267.
    • (1995) Parasitol. Today , vol.11 , pp. 265-267
    • Göringer, H.U.1    Köller, J.2    Shu, H.H.3
  • 43
    • 0028345258 scopus 로고
    • A thermodynamic investigation of the melting of B-Z junction forming DNA oligomers
    • Sheardy, R. D., Levine, N., Marotta, S., Suh, D. & Chaires, J. B. (1994) A thermodynamic investigation of the melting of B-Z junction forming DNA oligomers, Biochemistry 33, 1385-1391.
    • (1994) Biochemistry , vol.33 , pp. 1385-1391
    • Sheardy, R.D.1    Levine, N.2    Marotta, S.3    Suh, D.4    Chaires, J.B.5


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