Identification of novel regions of deletion in familial Wilms' tumor by comparative genomic hybridization

Cancer Research

Volumn 56, Issue 16, 1996, Pages 3837-3841

  Altura, Rachel A ^a   Valentine, Marcus ^a   Li, Hao ^a   Boyett, James M ^a   Shearer, Patricia ^a,b   Grundy, Paul ^c,d   Shapiro, David N ^a,b   Look, A Thomas ^a,b  

^a ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^b UNIVERSITY OF TENNESSEE COLLEGE OF MEDICINE   (United States)

^c CROSS CANCER INSTITUTE   (Canada)

^d UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CANCER SUSCEPTIBILITY; CHROMOSOME 20P; CHROMOSOME 3; CHROMOSOME 4; CHROMOSOME 9; CHROMOSOME DELETION; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA SEQUENCE; FAMILIAL CANCER; FLUORESCENCE IN SITU HYBRIDIZATION; HUMAN; HUMAN TISSUE; IMAGE ANALYSIS; NEPHROBLASTOMA; PRIORITY JOURNAL; TUMOR GROWTH; TUMOR SUPPRESSOR GENE;

CHROMOSOME DELETION; CHROMOSOMES, HUMAN, PAIR 20; CHROMOSOMES, HUMAN, PAIR 3; CHROMOSOMES, HUMAN, PAIR 4; CHROMOSOMES, HUMAN, PAIR 9; GENES, TUMOR SUPPRESSOR; HUMANS; KIDNEY NEOPLASMS; NUCLEIC ACID HYBRIDIZATION; WILMS TUMOR;

EID: 0029765587     PISSN: 00085472     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (40)

1. Matsunaga, E. Genetics of Wilms tumor Hum. Genet., 57: 231-246, 1981.
2. Suller, C. A., and Parkin, D. M. International variations in the incidence of childhood renal tumors Br J. Cancer, 62: 1026-1030, 1981.
3. Knudson, A G. Introduction to the genetics of primary renal tumors in children. Med. Pediatr Oncol , 21: 193-198, 1993.
4. Breslow, N , Olsen, J , Moksness, J , Beckwith, J., and Grundy, P. Familial Wilms tumors: a descriptive study. Med Pediatr. Oncol., in press, 1996.
5. Knudson, A. G., and Strong, L. C. Mutation and cancer: a model for Wilms tumor of the kidney. J Natl. Cancer Inst., 48: 313-323, 1972.
6. Call, K. M.,. Glaser, T., Ito, C. Y., Buckler, A. J., Pelletier, J., Haber, D. A., Rose, E. A , Kral, A., Yeger, H., Lewis, W. H., Jones, C., and Housman, D. E. Isolation and characterization of a zinc finger polypeptide gene at the human chromosome 11 Wilms' tumor locus. Cell, 60: 509-520, 1990
7. Gessler, M., Poustka, A., Cavenee, W., Neve, R. L., Orkin, S. H , and Bruns, G. A. Homozygous deletion in Wilms tumours of a zinc-finger gene identified by chromosome jumping. Nature (Lond.), 343: 774-778, 1990.
8. Bruening, W., Winnett, E., and Pelletier, J Wilms' tumor, a paradigm for insights into development and cancer. Cancer Invest., 13: 431-443, 1995.
9. Riccardi, V. M., Sujansky, E., Smith, A C., and Franke, U. Chromosomal imbalance in the aniridia-Wilms tumor association: 11p interstitial deletion Pediatrics, 61: 604-610, 1978.
10. Pelletier, J., Bruening, W., and Kashtan, C. E. Germline mutations in the Wilms tumor suppressor gene are associated with abnormal urogenital development in Denys-Drash syndrome. Cell, 67: 437-447, 1991.
11. Coppes, M. J., Huff, V., and Pelletier, J. Denys-Drash syndrome: relating a clinical disorder to genetic alterations in the tumor suppressor gene WT1 J. Pediatr., 123: 673-678, 1993.
12. Koufos, A., Grundy, P., Morgan, K., Aleck, K. A., Hadro, T , Lampkin, B C., and Cavenee, W. K Weidemann-Beckwith syndrome and a second Wilms tumor locus both map to 11p15.5. Am. J. Hum. Genet., 44: 711-719, 1989.
13. Coppes, M., and Williams B The molecular genetics of Wilms tumor. Cancer Invest., 12 57-65, 1994.
14. Grundy, P., Telzerow, P., Breslow, N., Moksness, J., Huff, V. and Paterson, M. Loss of heterozygosity for chromosomes 16q and 1p in Wilms' tumors predicts an adverse outcome. Cancer Res., 54: 2331-2333, 1994.
15. Huff, V., Reeve, A., Leppert, M., Strong, L. C., Douglass, E C., Gelser, C. F , Li, F. P., Meadows, A., Callen, D F., Lenoir, G, and Saunders, G F. Nonlinkage of 16q markers to familial predisposition to Wilms' tumor. Cancer Res., 52: 6117-6120, 1992.
16. Huff, V , Compton, D., Chao, L., Strong, L , Geiser, C., and Saunders, G. Lack of linkage of familial Wilms tumor to chromosomal band 11p13. Nature (Lond.), 336. 377-378, 1988.
17. Grundy, P., Koufos, A., Morgan, K., Li, F. P., Meadows, A. T., and Cavenee, W. K. Familial predisposition to Wilms tumor does not map to the short arm of chromosome 11. Nature (Lond ), 336: 374-376, 1988
18. Kallioniemi, A., Kallioniemi, O-P., Sudar, D., Rutovitz, D., Gray, S. W., Waldman, F., and Pinkel, D Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science (Washington DC), 258. 818-821, 1992
19. Ward, D C., Boyle, A , and Haaf, T. Fluorescence in situ hybridization techniques. In: R. Verma and A Babu (eds.), Human Chromosomes. Principles and Techniques, pp. 184-210. New York: McGraw Hill, Inc , 1995.
20. Kallioniemi, O-P., Kallioniemi, A , Piper, J., Isola, J., Waldman, F. M., Gray, J. W., and Pinkel, D. Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors. Genes Chromosomes & Cancer, 10: 231-243, 1994.
21. Searle, S. R., Casella, G., and McCulloch, C E Variance components. In: Balanced Data: Estimating Fixed Effects in Mixed Models, pp. 159-163. New York: John Wiley & Sons, Inc., 1992.
22. Zhang, W., Zhang, J., Kornuc, M., Kwan, K , Frank, R., and Nimer, S. D. Molecular cloning and characterization of NG-IL3A, a transcriptional activator of the human interleukin-3 promoter. Mol Cell Biol , 15: 6055-6063, 1995.
23. Mitelman, F. Catalog of Chromosome Aberrations in Cancer, 5th ed., p. 641. New York: Wiley-Liss, Inc., 1994.
24. Look, A T , and Kirsch, I. R. Molecular basis of childhood cancer. In: P. A. Pizzo and D. G. Poplack (eds.), Principles and Practice of Pediatric Oncology, 3rd ed Philadelphia: J B. Lippincott Co., in press, 1996.
25. Verhaegh, G., Jongmans, W., and Jaspers, N. G. A gene that regulates DNA replication in response to DNA damage is located on human chromosome 4q. Am. J. Hum Genet., 57: 1095-1103, 1995.
26. Fountain, J. W., Karayiourgou, M., Ernstoff, M S , Kirkwood, J. M , Vlock, D. R , Titus-Ernstoff, L , Bouchard, B., Houghton, A. N., Lahti, J., Kidd, V. J , Housman, D E., and Dracopoli, N. C Homozygous deletions of human chromosome 9p21 in melanoma. Proc. Natl. Acad. Sci. USA, 89: 10557-10561, 1992
27. James, C D , He, J., Collins, V. P , Allalunis-Turner, M. J., Day, R. S., III, and Day, R. S. Localization of chromosome 9p homozygous deletions in glioma cell lines with markers constituting a continuous linkage group. Cancer Res., 53: 3674-3676, 1993
28. Diaz, M. O., Zieman, S., LeBeau, M M., Pitha, P , Smith, S. D . Chilcote, R. R , and Rowley, J. P. Homozygous deletion of the α- and β1-interferon genes in human leukemia and derived cell lines. Proc Natl. Acad. Sci. USA, 85: 5259-5263, 1988.
29. Lukeis, R., Irving, L., Garson, M , and Hasthorpe, S. Cytogenetics of non-small cell lung cancer: analysis of consistent non-random abnormalities. Genes Chromosomes & Cancer, 2. 116-124, 1990.
30. Serrano, M., Hannon, J., and Beach, D. A new regulatory motif in cell-cycle control causing specific inhibition of cyclin D/CDK4. Nature (Lond.), 366: 704-707, 1993.
31. Kamb, A., Gruis, N. A., Weaver-Feldhaus, J., Liu, G., Harshman, K., Tautiqian, S. V., Day, R. S., III, Johnson, B E., and Skolnick, M. H A cell cycle regulator potentially involved in genesis of many tumor types. Science (Washington DC), 264. 436-440, 1994.
32. Kamb, A., Shattuck-Eidens, D., Eeles, R., Liu, Q., Gruis, N. A., Ding, W., Hussey, C., Tran, T., Miki, Y., Weaver-Feldhaus, J., Aitken, J R., Anderson, D. E , Bergman, W., Frants, R., Goldgar, D. E., Green, A., MacLennan, R., Martin, N. G., Meyer, L. J., Youl, P., Zone, J. J., Skolnick, H. H , and Cannon-Albright, L. Analysis of the p16 gene (CDKN2) as a candidate for the chromosome 9p melanoma susceptibility locus. Nat. Genet., 8: 22-26, 1994.
33. Nobori, T., Miura, K., Wu, D. J., Lois, A., Takabayashi, K , and Carson, D. A. Deletions of the cyclin-dependent kinase 4 inhibitor gene in multiple human cancers. Nature (Lond ), 368: 753-756, 1994
34. Puig, S., Ruiz, A., Lazaro, C., Castel, T., Lynch, M., Palou, J., Vitalta, A , Weissenbach, J., Mascaro, J M., and Estirill, X Chromosome 9p deletions in cutaneous malignant melanoma tumors: the minimal deleted region involves markers outside the p16 (CDKN2) gene. Am. J. Hum. Genet., 57: 395-402, 1995.
35. Yamaguchi, T , Toguchida, J., Yamamuro, T., Kotoura, Y., Takada, N , Kawaguchi, N , Kaneko, Y., Nakamura, Y , Sasaki, M S., and Ishizaki, K. Allelotype analysis in osteosarcomas. frequent allele loss on 3q, 14q, 1p, and 18q. Cancer Res., 52: 2419-2423, 1992.
36. Szabo, J., Heath, B., Hill, V. M., Jackson, C. E., Zarbo, R. J., Mallette, L. E., Chew, S. L., Besser, G. M , Thakker, R V , Huff-Lepert, M. F., and Heath, H., III. Hereditary hyperparathyroidism-jaw tumor syndrome: the endocrine tumor gene HRPT2 maps to chromosome 1q21-q31. Am J. Hum. Genet., 56: 944-950, 1995.
37. Sheng, W W., Soukup, S., Bove, K , Gotwals, B., and Lampkin, B. Chromosome analysis of 31 Wilms' tumors. Cancer Res., 50: 2789-2793, 1990
38. Kondo, K., Chilcote, R. R , Maurer, H. S , and Rowley, J. D. Chromosome abnormalities in tumor cells from patients with sporadic Wilms' tumor. Cancer Res., 44: 5376-5381, 1984.
39. Slater, R. M. The cytogenetics of Wilms tumor. Cancer Genet Cytogenet., 19, 37-41, 1986.
40. Douglass, E C., Wilimas, J. A., Green, A A , and Look, A. T. Abnormalities of chromosomes I and II in Wilms tumor. Cancer Genet. Cytogenet., 14: 331-338, 1985.