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Volumn 39, Issue 2, 1996, Pages 159-169

The origin of protein synthesis: On some molecular fossils identified through comparison of protein sequences

Author keywords

Aminoacyl tRNA synthetases; Antique evolutionary relationships; Origin of life; Peptide antibiotics; RNA world; Thioester world

Indexed keywords

COENZYME A; POLYPEPTIDE ANTIBIOTIC AGENT;

EID: 0029763399     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/0303-2647(96)01614-0     Document Type: Article
Times cited : (11)

References (53)
  • 2
    • 0026078625 scopus 로고
    • Isolation and partial characterization of ACV synthetase from Cephalosporium acremonium and Streptomyces clavugilerus
    • Baldwin, J.E., Bird, J.W., Field, R.A., O'Callaghan, N.M., Scholfield, C.J. and Willis, A.C., 1991, Isolation and partial characterization of ACV synthetase from Cephalosporium acremonium and Streptomyces clavugilerus. J. Antibiot. 44, 241-248.
    • (1991) J. Antibiot. , vol.44 , pp. 241-248
    • Baldwin, J.E.1    Bird, J.W.2    Field, R.A.3    O'Callaghan, N.M.4    Scholfield, C.J.5    Willis, A.C.6
  • 3
    • 0023483467 scopus 로고
    • The origin of cells: A symbiosis between genes, catalysts, and membranes
    • Cavalier-Smith, T., 1987, The origin of cells: a symbiosis between genes, catalysts, and membranes. Cold Spring Harbor Symp. Quant. Biol. 52, 805-824.
    • (1987) Cold Spring Harbor Symp. Quant. Biol. , vol.52 , pp. 805-824
    • Cavalier-Smith, T.1
  • 4
    • 0025910809 scopus 로고
    • The cephamycin biosynthetic genes pcbAB, encoding a large multidomain peptide synthetase, and pcbC of Nocardia lactamdurans are clustered together in an organization different from the same genes in Acremonium chrysogenum and Peniciullium chysogenum
    • Coque, J.R.R., Martin, J.F. and Liras, P., 1991, The cephamycin biosynthetic genes pcbAB, encoding a large multidomain peptide synthetase, and pcbC of Nocardia lactamdurans are clustered together in an organization different from the same genes in Acremonium chrysogenum and Peniciullium chysogenum. Mol. Microbiol. 5, 1125-1133.
    • (1991) Mol. Microbiol. , vol.5 , pp. 1125-1133
    • Coque, J.R.R.1    Martin, J.F.2    Liras, P.3
  • 5
    • 0017040143 scopus 로고
    • A speculation on the origin of protein synthesis
    • Crick, F.H.C., Brenner, S., Klug, A. and Pieczenik, G., 1976, A speculation on the origin of protein synthesis. Orig. Life 7, 389-397.
    • (1976) Orig. Life , vol.7 , pp. 389-397
    • Crick, F.H.C.1    Brenner, S.2    Klug, A.3    Pieczenik, G.4
  • 6
    • 0027851759 scopus 로고
    • Sequence, structure and evolutionary relationships between class 2 aminoacyl-tRNA synthetases: An update
    • Cusack, S., 1993, Sequence, structure and evolutionary relationships between class 2 aminoacyl-tRNA synthetases: an update. Biochimie 75, 1077-1081.
    • (1993) Biochimie , vol.75 , pp. 1077-1081
    • Cusack, S.1
  • 7
    • 0025874160 scopus 로고
    • Sequence, structural and evolutionary relationships between class 2 aminoacyl-tRNA synthetases
    • Cusack, S., Hartlein, M. and Leberman, R., 1991, Sequence, structural and evolutionary relationships between class 2 aminoacyl-tRNA synthetases. Nucl. Acids Res. 19, 3489-3498.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 3489-3498
    • Cusack, S.1    Hartlein, M.2    Leberman, R.3
  • 8
    • 0024893581 scopus 로고
    • Homeotopic transformation and the origin of translation
    • Danchin, A., 1989, Homeotopic transformation and the origin of translation. Prog. Biophys. Mol. Biol. 54, 81-86.
    • (1989) Prog. Biophys. Mol. Biol. , vol.54 , pp. 81-86
    • Danchin, A.1
  • 9
    • 0027674975 scopus 로고
    • The aminoacyl-tRNA synthetase family: Modules at work
    • Delarue, M. and Moras, D., 1993, The aminoacyl-tRNA synthetase family: modules at work. BioEssays 15, 675-687.
    • (1993) Bioessays , vol.15 , pp. 675-687
    • Delarue, M.1    Moras, D.2
  • 10
    • 0023497732 scopus 로고
    • Selection by differential molecular survival: A possible mechanism of early chemical evolution
    • de Duve, C., 1987, Selection by differential molecular survival: a possible mechanism of early chemical evolution. Proc. Natl. Acad. Sci. USA 84, 8253-8256.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 8253-8256
    • De Duve, C.1
  • 11
    • 0024290699 scopus 로고
    • Did god make RNA?
    • de Duve, C., 1988, Did God make RNA? Nature 336, 209-210.
    • (1988) Nature , vol.336 , pp. 209-210
    • De Duve, C.1
  • 13
    • 0025026399 scopus 로고
    • The cluster of penicillin biosynthetic genes. Identification and characterization of the pcbAB gene encoding the α-aminoadipyl-cysteinyl-valine synthetase and linkage to the pchC and penDE genes
    • Diez, B., Gutierrez, S., Barredo, J.L., van Solingen, P., van der Voort, L.H.M. and Martin, J.F, 1990, The cluster of penicillin biosynthetic genes. Identification and characterization of the pcbAB gene encoding the α-aminoadipyl-cysteinyl-valine synthetase and linkage to the pchC and penDE genes. J. Biol. Chem. 265, 16358-16365.
    • (1990) J. Biol. Chem. , vol.265 , pp. 16358-16365
    • Diez, B.1    Gutierrez, S.2    Barredo, J.L.3    Van Solingen, P.4    Van Der Voort, L.H.M.5    Martin, J.F.6
  • 14
    • 0028575645 scopus 로고
    • On the origin of protein synthesis: A speculative model based on hairpin RNA structures
    • Di Giulio, M., 1994, On the origin of protein synthesis: a speculative model based on hairpin RNA structures. J. Theor. Biol. 171, 303-308.
    • (1994) J. Theor. Biol. , vol.171 , pp. 303-308
    • Di Giulio, M.1
  • 15
    • 0025158208 scopus 로고
    • Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
    • Eriani, G., Delarue, M., Poch, O., Gangloff, J. and Moras, D., 1990, Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature 250, 203-206.
    • (1990) Nature , vol.250 , pp. 203-206
    • Eriani, G.1    Delarue, M.2    Poch, O.3    Gangloff, J.4    Moras, D.5
  • 16
    • 0023145912 scopus 로고
    • Role of arginine-tRNA in protein degradation by the ubiquitin pathway
    • Ferber, S., Ciechanover, A., 1987, Role of arginine-tRNA in protein degradation by the ubiquitin pathway. Nature 326, 808-811.
    • (1987) Nature , vol.326 , pp. 808-811
    • Ferber, S.1    Ciechanover, A.2
  • 17
    • 0025764226 scopus 로고
    • Structure and evolution of a group of related aminoacyl-tRNA synthetases
    • Gatti, D.L. and Tzagoloff, A., 1991, Structure and evolution of a group of related aminoacyl-tRNA synthetases. J. Mol. Biol. 218, 557-568.
    • (1991) J. Mol. Biol. , vol.218 , pp. 557-568
    • Gatti, D.L.1    Tzagoloff, A.2
  • 18
    • 36849148382 scopus 로고
    • The RNA world
    • Gilbert, W., 1986, The RNA world. Nature 319, 618.
    • (1986) Nature , vol.319 , pp. 618
    • Gilbert, W.1
  • 19
    • 0025904272 scopus 로고
    • Characterization of Cephalosporium acremonium pcbAB gene encoding α-aminoadipyl-cysteinyl-valine synthetase, a large multidomain peptide synthetase: Linkage to the pcbC gene as a cluster of early cephalosphorin biosynthetic genes and evidence of multiple functional domains
    • Gutierrez, S., Diez, B., Montenegro, E. and Martin, J.F., 1991, Characterization of Cephalosporium acremonium pcbAB gene encoding α-aminoadipyl-cysteinyl-valine synthetase, a large multidomain peptide synthetase: linkage to the pcbC gene as a cluster of early cephalosphorin biosynthetic genes and evidence of multiple functional domains. J. Bacteriol. 173, 2354-2365.
    • (1991) J. Bacteriol. , vol.173 , pp. 2354-2365
    • Gutierrez, S.1    Diez, B.2    Montenegro, E.3    Martin, J.F.4
  • 20
    • 0016612552 scopus 로고
    • Speculations on the origin and evolution of metabolism
    • Hartman, H., 1975, Speculations on the origin and evolution of metabolism. J. Mol. Evol. 4, 359-370.
    • (1975) J. Mol. Evol. , vol.4 , pp. 359-370
    • Hartman, H.1
  • 21
    • 0024234855 scopus 로고
    • Clustal: A package for performing multiple sequence alignments on a microcomputer
    • Higgins, D.G. and Sharp, P.M., 1988, Clustal: a package for performing multiple sequence alignments on a microcomputer. Gene 73, 237-244.
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 22
    • 0024598146 scopus 로고
    • Fast and sensitive sequence alignments on a microcomputer
    • Higgins, D.G., Sharp, P.M., 1989, Fast and sensitive sequence alignments on a microcomputer. Comput. Applic. Biosci. 5, 151-153.
    • (1989) Comput. Applic. Biosci. , vol.5 , pp. 151-153
    • Higgins, D.G.1    Sharp, P.M.2
  • 23
    • 0017272554 scopus 로고
    • Enzyme recruitment in evolution of new function
    • Jensen, R.A., 1976, Enzyme recruitment in evolution of new function. Annu. Rev. Microbiol. 30, 409-425.
    • (1976) Annu. Rev. Microbiol. , vol.30 , pp. 409-425
    • Jensen, R.A.1
  • 24
    • 0024476917 scopus 로고
    • RNA evolution and the origins of life
    • Joyce, G.F., 1989, RNA evolution and the origins of life. Nature 338, 217-224.
    • (1989) Nature , vol.338 , pp. 217-224
    • Joyce, G.F.1
  • 25
    • 0025024567 scopus 로고
    • Nonribosomal biosynthesis of peptide antibiotics
    • Kleinkauf, H. and von Dohren, H., 1990, Nonribosomal biosynthesis of peptide antibiotics. Eur. J. Biochem. 192, 1-15.
    • (1990) Eur. J. Biochem. , vol.192 , pp. 1-15
    • Kleinkauf, H.1    Von Dohren, H.2
  • 26
    • 0014667057 scopus 로고
    • A soluble enzyme from Escherichia coli which catalyzes the transfer of leucine and phenylalanine from tRNA to acceptor proteins
    • Leibowitz, M.J. and Soffer, R.L., 1969, A soluble enzyme from Escherichia coli which catalyzes the transfer of leucine and phenylalanine from tRNA to acceptor proteins. Biochem. Biophys. Res. Commun. 36, 47-53.
    • (1969) Biochem. Biophys. Res. Commun. , vol.36 , pp. 47-53
    • Leibowitz, M.J.1    Soffer, R.L.2
  • 27
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D.J., and Pearson, W.R., 1985, Rapid and sensitive protein similarity searches. Science 227, 1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 29
    • 0015209453 scopus 로고
    • Attempts to map a process evolution of peptide biosynthesis
    • Lipmann, F., 1971, Attempts to map a process evolution of peptide biosynthesis. Science 173, 875-884.
    • (1971) Science , vol.173 , pp. 875-884
    • Lipmann, F.1
  • 30
    • 0025895820 scopus 로고
    • D-L-cysteinyl-D-valine synthetase from Apergillus nidulans. Molecular characterization of the acvA gene encoding the first enzyme of the penicilin biosynthetic pathway
    • MacCabe, A.P., Van Liempt, H., Palissa, H., Unkles, S.E., Riach, M.B.R., Pfeifer, E., von Dohren, H. and Kinghorn, J.R., 1991 D-L-cysteinyl-D-valine synthetase from Apergillus nidulans. Molecular characterization of the acvA gene encoding the first enzyme of the penicilin biosynthetic pathway. J. Biol. Chem. 266, 12646-12654.
    • (1991) J. Biol. Chem. , vol.266 , pp. 12646-12654
    • MacCabe, A.P.1    Van Liempt, H.2    Palissa, H.3    Unkles, S.E.4    Riach, M.B.R.5    Pfeifer, E.6    Von Dohren, H.7    Kinghorn, J.R.8
  • 31
    • 0027414576 scopus 로고
    • Pre-biotic syntheses of vitamin coenzymes: II. Pantoic acid, pantothenic acid and the composition of coenzyme A
    • Miller, S.L. and Schlesinger, G., 1993, Pre-biotic syntheses of vitamin coenzymes: II. Pantoic acid, pantothenic acid and the composition of coenzyme A. J. Mol. Evol. 36, 308-314.
    • (1993) J. Mol. Evol. , vol.36 , pp. 308-314
    • Miller, S.L.1    Schlesinger, G.2
  • 32
    • 0026591001 scopus 로고
    • Structural and functional relationships between aminoacyl-tRNA synthetases
    • Moras, D., 1992, Structural and functional relationships between aminoacyl-tRNA synthetases. Trends Biochem. Sci. 17, 159-164.
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 159-164
    • Moras, D.1
  • 33
    • 0025858457 scopus 로고
    • Evolution and relatedness in two aminoacyl-tRNA synthetase families
    • Nagel, G.M. and Doolittle, R.F., 1991, Evolution and relatedness in two aminoacyl-tRNA synthetase families. Proc. Natl. Acad. Sci. USA 88, 8121-8125.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 8121-8125
    • Nagel, G.M.1    Doolittle, R.F.2
  • 34
    • 0014369024 scopus 로고
    • Evolution of the genetic apparatus
    • Orgel, L.E., 1968, Evolution of the genetic apparatus. J. Mol. Biol. 38, 381-393.
    • (1968) J. Mol. Biol. , vol.38 , pp. 381-393
    • Orgel, L.E.1
  • 35
    • 0024836446 scopus 로고
    • The origin of polynucleotide-directed protein synthesis
    • Orgel, L.E., 1989, The origin of polynucleotide-directed protein synthesis. J. Mol. Evol. 29, 465-474.
    • (1989) J. Mol. Evol. , vol.29 , pp. 465-474
    • Orgel, L.E.1
  • 36
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R. and Lipman, D.J., 1988, Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 37
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTP and FASTA
    • Pearson, W.R., 1990, Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol. 183, 63-98.
    • (1990) Methods Enzymol. , vol.183 , pp. 63-98
    • Pearson, W.R.1
  • 38
    • 0028104763 scopus 로고
    • Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase
    • Poterszman, A., Delarue, M., Thierry, J.C. and Moras, D., 1994, Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase. J. Mol. Biol. 244, 158-167.
    • (1994) J. Mol. Biol. , vol.244 , pp. 158-167
    • Poterszman, A.1    Delarue, M.2    Thierry, J.C.3    Moras, D.4
  • 40
    • 0023514264 scopus 로고
    • Cloning and characterization of isopenicillin N synthetase gene mediating the formation of the β-lactam ring in Aspergillus nidulans
    • Ramon, D., Carramolino, L., Patino, C., Sanchez, F. and Penalva, M.A., 1987, Cloning and characterization of isopenicillin N synthetase gene mediating the formation of the β-lactam ring in Aspergillus nidulans. Gene 57, 171-181.
    • (1987) Gene , vol.57 , pp. 171-181
    • Ramon, D.1    Carramolino, L.2    Patino, C.3    Sanchez, F.4    Penalva, M.A.5
  • 41
    • 0017328493 scopus 로고
    • Aminoacyl thiol esters and the origins of genetic specificity
    • Reanney, D.C., 1977, Aminoacyl thiol esters and the origins of genetic specificity. J. Theor. Biol. 65, 555-569.
    • (1977) J. Theor. Biol. , vol.65 , pp. 555-569
    • Reanney, D.C.1
  • 42
    • 0016204709 scopus 로고
    • Staphylococcal transfer ribonucleic acids
    • Roberts, R.J., 1974, Staphylococcal transfer ribonucleic acids. J. Biol. Chem. 249, 4787-4796.
    • (1974) J. Biol. Chem. , vol.249 , pp. 4787-4796
    • Roberts, R.J.1
  • 43
    • 0025863049 scopus 로고
    • Biosynthesis of Escherichia coli siderophore enterobactin: Sequence of the entf gene, expression and purification of EntF, and analysis of covalent phosphopantetheine
    • Rusnak, F., Sakaitani, M., Drueckhammer, D., Reichertt, J. and Walsh, C.T., 1991, Biosynthesis of Escherichia coli siderophore enterobactin: sequence of the entf gene, expression and purification of EntF, and analysis of covalent phosphopantetheine. Biochemistry 30, 2916-2927.
    • (1991) Biochemistry , vol.30 , pp. 2916-2927
    • Rusnak, F.1    Sakaitani, M.2    Drueckhammer, D.3    Reichertt, J.4    Walsh, C.T.5
  • 44
    • 0026005989 scopus 로고
    • Evolution of aminoacyl-tRNA synthetase quaternary structure and activity: S. cerevisiae mitochondrial phenylalanyl-tRNA synthetase
    • Sanni, A., Walter, P., Boulanger, Y., Ebel, J.P. and Fasiolo, F., 1991, Evolution of aminoacyl-tRNA synthetase quaternary structure and activity: S. cerevisiae mitochondrial phenylalanyl-tRNA synthetase. Proc. Natl. Acad. Sci. USA 88, 8387-8391.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 8387-8391
    • Sanni, A.1    Walter, P.2    Boulanger, Y.3    Ebel, J.P.4    Fasiolo, F.5
  • 45
    • 0028099184 scopus 로고
    • Possible role of aminoacyl-RNA complex in noncoded peptide synthesis and origin of coded synthesis
    • Schimmel, P. and Henderson, B., 1994, Possible role of aminoacyl-RNA complex in noncoded peptide synthesis and origin of coded synthesis. Proc. Natl. Acad. Sci. USA 91, 11283-11286.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 11283-11286
    • Schimmel, P.1    Henderson, B.2
  • 48
    • 0025925334 scopus 로고
    • Localization of the lysine ε-aminotransferase (lat) and D-(L-α-aminoadipyl)-L-cystenyl-D-valine synthetase (pcbAB) genes from Streptomyces clavuligerus and production of lysine ε-aminotransferase activity in Escherichia coli
    • Tobin, M.B., Kovacevic, S., Madduri, K., Hoskins, J.A., Skatrud, P.L., Vining, L.C., Stutterd, C. and Miller, R.L., 1991, Localization of the lysine ε-aminotransferase (lat) and D-(L-α-aminoadipyl)-L-cystenyl-D-valine synthetase (pcbAB) genes from Streptomyces clavuligerus and production of lysine ε-aminotransferase activity in Escherichia coli. J. Bacteriol. 173, 6223-6229.
    • (1991) J. Bacteriol. , vol.173 , pp. 6223-6229
    • Tobin, M.B.1    Kovacevic, S.2    Madduri, K.3    Hoskins, J.A.4    Skatrud, P.L.5    Vining, L.C.6    Stutterd, C.7    Miller, R.L.8
  • 49
    • 0026588298 scopus 로고
    • Four homologous domains in the primary structure of GrsB are related to domains in a superfamily of adenylate-forming enzymes
    • Turgay, K., Krause, M. and Marahiel, M.A., 1992, Four homologous domains in the primary structure of GrsB are related to domains in a superfamily of adenylate-forming enzymes. Mol. Microbiol. 6, 529-546.
    • (1992) Mol. Microbiol. , vol.6 , pp. 529-546
    • Turgay, K.1    Krause, M.2    Marahiel, M.A.3
  • 50
    • 0024590380 scopus 로고
    • D-(L-α-aminoadipyl)-L-cystenyl-D-valine synthetase from Aspergillus nidulans
    • van Liempt, H., von Dohren, H. and Kleinkauf, H., 1989, D-(L-α-aminoadipyl)-L-cystenyl-D-valine synthetase from Aspergillus nidulans. J. Biol. Chem. 264, 3680-3684.
    • (1989) J. Biol. Chem. , vol.264 , pp. 3680-3684
    • Van Liempt, H.1    Von Dohren, H.2    Kleinkauf, H.3
  • 51
    • 0014542788 scopus 로고
    • Some aspects of the evolution of metabolic pathways
    • Waley, S.G., 1969, Some aspects of the evolution of metabolic pathways. Comput. Biochem. Physiol. 30, 1-11.
    • (1969) Comput. Biochem. Physiol. , vol.30 , pp. 1-11
    • Waley, S.G.1
  • 52
    • 0026295066 scopus 로고
    • Origin of genetically encoded protein synthesis: A model based on selection for RNA peptidation
    • Wong, J.T., 1991, Origin of genetically encoded protein synthesis: a model based on selection for RNA peptidation. Orig. Life Evol. Biosph. 21, 165-176.
    • (1991) Orig. Life Evol. Biosph. , vol.21 , pp. 165-176
    • Wong, J.T.1
  • 53
    • 0015980083 scopus 로고
    • On earlier states of biochemical systems
    • Yeas, M., 1974, On earlier states of biochemical systems. J. Theor. Biol. 44, 145-160.
    • (1974) J. Theor. Biol. , vol.44 , pp. 145-160
    • Yeas, M.1


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