Protein: Protein interactions in the lipid bilayer (Review)

Molecular Membrane Biology

Volumn 13, Issue 2, 1996, Pages 67-79

  Harrison, Patrick T ^a,b  

^a UNIVERSITY OF GLASGOW   (United Kingdom)

^b RESEARCH INSTITUTE OF MOLECULAR PATHOLOGY   (Austria)

Author keywords

Disulphide mapping; Protein:protein interactions; Transmembrane helix; chain; chain

Indexed keywords

FC RECEPTOR; GLYCINE; MEMBRANE PROTEIN; PROTEIN SUBUNIT; T LYMPHOCYTE RECEPTOR; TRANSFERRIN RECEPTOR;

DISULFIDE BOND; ESCHERICHIA COLI; GENE ACTIVATION; HYDROGEN BOND; LIPID BILAYER; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN LIPID INTERACTION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; PROTO ONCOGENE; REVIEW; SIGNAL TRANSDUCTION;

ESCHERICHIA COLI;

EID: 0029763260     PISSN: 09687688     EISSN: None     Source Type: Journal    
DOI: 10.3109/09687689609160579     Document Type: Review

References (69)

1. Amigorena, S., Salamero, J., Davoust, J., Fridman, W. H. and Bonnerot, C. (1992) Tyrosine-containing motif that transduces cell activation signals also determines internalization and antigen presentation via type-III receptors for IgG. Nature, 358, 337-341.
2. Bargmann, C. I. and Weinberg, R. A. (1988a) Increased tyrosine kinase activity associated with the protein encoded by the activated neu oncogene. Proceedings of the National Academy of Sciences, USA, 85, 5394-5398.
3. Bargmann, C. I. and Weinberg, R. A. (1988b) Oncogenic activation of the neu-encoded receptor protein by point mutation and deletion. EMBO Journal, 7, 2043-2052.
4. Bonifacino, J. S., Cosson, P. and Klausner, R. D. (1990) Colocalized transmembrane determinants for ER degradation and subunit assembly explain the intracellular fate of TCR chains. Cell, 63, 503-513.
5. Bonifacino, J. S., Cosson, P., Shah, N. and Klausner, R. D. (1991) Role of potentially charged transmembrane residues in targeting proteins for retention and degradation within the endoplasmic-reticulum. EMBO Journal, 10, 2783-2793.
6. Bormann, B. J., Knowtes, W. J. and Marchesi, V. T. (1989) Synthetic peptides mimic the assembly of transmembrane glycoproteins. Journal of Biological Chemistry. 264, 4033-4037.
7. Bottino, C., Vitale, M., Olcese, L., Sivori, S., Morelli, L, Augugliaro, R., Ciccone, E., Moretta, L. and Moretta, A. (1994) The human natural killer cell receptor for major histocompatibility complex class I molecules: surface modulation of p58 molecules and their linkage to CD3 ς chain, FcεRI gamma chain and the p56(lck) kinase. European Journal of Immunology, 24, 2527-2534.
8. Brandt-Rauf, P. W., Monaco, R. and Pincus, M. R. (1994) Conformation of the transmembrane domain of the epidermal growth factor receptor. Journal of Protein Chemistry, 13, 227-231.
9. Brandt-Rauf, P W., Rackovsky, S. and Pincus, M. R. (1990) Correlation of the structure of the transmembrane domain of the neu oncogene-encoded p185 protein with its function. Proceedings of the National Academy of Sciences, USA, 87, 8660-8664.
10. Chothia, C., Levitt, M. and Richardson, D. (1981) Helix to helix packing in proteins. Journal of Molecular Biology, 145, 215-250.
11. Chou, P. Y. and Fasman, G. D. (1978) Empirical predictions of protein conformation Annual Review of Biochemistry, 47, 251-276.
12. Cosson, P., Lankford, S. P., Bonifacino, J. S. and Klausner, R. D. (1991) Membrane-protein association by potential intramembrane charge pairs Nature, 351, 414-416.
13. Cowan, S. W., Schirmer, T., Rummel, G., Steiert, M., Ghosh, R., Pauptit, R. A., Jansonius, J. N. and Rosenbusch, J. P. (1992) Crystal-structures explain functional-properties of two Escherichia coli porins. Nature, 358, 727-733.
14. Davis, W., Harrison, P. T., Hutchinson, M. J. and Allen, J. M. (1995) Two distinct regions of FcγRI initiate separate signaling pathways involved in endocytosis and phagocytosis. EMBO Journal, 14, 432-441.
15. Deisenhofer, J., Epp, O., Miki, K., Huber, R. and Michel, H. (1985) Structure of the protein subunits in the phptosynthetic reaction centre of Rhodopseudomonas vindis at 3 Å resolution. Nature, 318, 618-624.
16. DiFiore, P. P., Pierce, J. H., Fleming, T. P., Hazan, R., Ullrich, A., King, C. R., Schlessinger, J and Aaronson, S. A. (1987) Overexpression of the human EGF receptor confers an EGF-dependent transformed phenotype to NIH 3T3 cells. Cell. 51, 1063-1070.
17. Engleman, D.M. and Steitz, T. A. (1981) The spontaneous insertion of proteins into and across the membrane: the helical hairpin hypothesis. Cell, 23, 411-422.
18. Fischbarg, J., Cheung, M., Li, J., Iserovich, P., Czegledy, F., Kuang, K. and Garmer, M. (1994) Are most transporters and channels beta barrels? Molecular and Cellular Biochemistry, 140, 147-162.
19. Gassmann, M., Amrein, K. E., Flint, N. A., Schraven, B. and Bum, P. (1994) Identification of a signaling complex involving CD2, ς chain and p59 (fyn) in T lymphocytes. European Journal of Immunology, 24, 139-144.
20. Goncalves, E., Yamada, K., Thatte, H. S., Backer, J. M., Golan, D. E., Kahn, C. R. and Shoelson, S. E. (1993) Optimizing transmembrane domain helicity accelerates insulin-receptor internalization and lateral mobility. Proceedings of the National Academy of Sciences. USA, 90, 5762-5766.
21. Gullick, W. J., Bottornley, A. C., Lofts, F. J., Doak, D. G., Mulvey, D., Newman, R., Crumpton, M. J., Sternberg, M. J. E. and Campbell, I. D. (1992) Three-dimensional structure of the transmembrane region of the protooncogenic and oncogenic forms of the neu protein. EMBO Journal, 11, 43-48.
22. Harrison, P. T., Bjorkhaug, L., Hutchinson, M. J. and Allen, J. M. (1995) The interaction between human FcγRI and the γ-chain is mediated solely via the 21 amino-acid transmembrane domain of FcγRl. Molecular Membrane Biology, 12, 309-312.
23. Hudziak, R. M., Schlessinger, J. and Ullrich, A. (1987) Increased expression of the putative growth-factor receptor p185her2 causes transformation and tumongenesis of NIH-3T3 cells. Proceedings of the National Academy of Sciences, USA, 84, 7159-7163.
24. Indik, Z. K., Hunter, S., Huang, M. M., Pan, X Q., Chien, P., Kelly, C., Levinson, A. J., Kimberly, R. P. and Schreiber, A. D. (1994) The high affinity Fcγ receptor (CD64) induces phagocytosis in the absence of its cytoplasmic domain. The gamma subunit of FcγRIIIA imparts phagocytic function to FcγRI. Experimental Hematology, 22, 599-606.
25. Jones, D. T., Taylor, W. R. and Thornton, J. M. (1994) A mutation data matrix for transmembrane proteins. FEBS Letters, 339, 269-275.
26. Klausner, R. D., Lippincottschwartz, J. and Bonifacino, J. S. (1990) The T-cell antigen receptor-insights into organelle biology. Annual Review of Cell Biology, 6, 403-431
27. Kurosaki, T., Gander, I. and Ravetch, J. V. (1991) A subunit common to an IgG Fc-receptor and the T-cell receptor mediates assembly through different interactions. Proceedings of the National Academy of Sciences, USA, 88, 3837-3841.
28. Landolt-Marticorena, C., Williams, K. A., Deber, C. M. and Reithmeier, R. A. F. (1993) Nonrandom distribution of amino acids in the transmembrane segments of human type I single span membrane-proteins. Journal of Molecular Biology, 229, 602-608
29. Lankford, S. P., Cosson, P., Bonifacino, J. S. and Klausner, R. D. (1993) Transmembrane domain length affects charge-mediated retention and degradation of proteins within the endoplasmic reticulum Journal of Biological Chemistry, 268, 4814-4820.
30. Lee, G. F. and Hazelbauer, G. L. (1995) Quantitative approaches to utilizing mutational analysis and disulfide cross-linking for modeling a transmembrane domain. Protein Science, 4, 1100-1107.
31. Lee, G. F., Burrows, G. G., Lebert, M. R., Dutton, D. P. and Hazelbauer, G. L. (1994) Deducing the organization of a transmembrane domain by disulfide cross-linking - the bacterial chemoreceptor Trg. Journal of Biological Chemistry, 269, 29920-29927.
32. Lee, G. F., Lebert, M. R., Lilly, A. A. and Hazelbauer, G. L. (1995) Transmembrane signaling characterized in bacterial chemoreceptors by using sulfhydryl cross-linking in vivo. Proceedings of the National Academy of Sciences, USA, 92, 3391-3395.
33. Lemmon, M. A. and Engelman, D. M. (1994) Specificity and promiscuity in membrane helix interactions. Quarterly Reviews of Biophysics, 27, 157-218.
34. Lemmon, M. A., Flanagan, J. M., Hunt, J. F., Adair, B. D., Bormann, B. J., Dempsey, C. E. and Engelman, D. M. (1992a) Glycophonn A dimerization is driven by specific interactions between transrnembrane α-helices Journal of Biological Chemistry, 267, 7683-7689.
35. Lemmon, M. A., Flanagan. J. M., Treutlein, H. R., Zhang, J. and Engelman, D. M. (1992b) Sequence specificity in the dimerization of transmembrane α-helices. Biochemistry, 31, 12719-12725.
36. Lemmon, M. A., Treutlein, H. R., Adams, P. D., Brunger, A. T. and Engelman, D. M. (1994) A dimerization motif for transmembrane α-helices. Nature Structural Biology, 1, 157-163.
37. Lofts, F. J., Hurst, H. C., Sternberg, M. J. E. and Gullick, W. J. (1993) Specific short transmembrane sequences can inhibit transformation by the mutant neu growth factor receptor in vitro and in vivo. Oncogene, 8, 2813-2820
38. Maliszewski, C. R., March, C. J., Schoenborn, M A.. Gimpel, S and Li, S. (1990) Expression cloning of a human Fc receptor for IgA. Journal of Experimental Medicine, 172, 1665-1672.
39. Manolios, N., Bonifacino, J. S. and Klausner, R. D. (1990) Transmembrane helical interactions and the assembly of the T cell receptor complex. Science, 249, 274-277.
40. Manolios, N., Letourneur, F., Bonifacino, J. S. and Klausner, R. D. (1991) Pairwise, cooperative and inhibitory interactions describe the assembly and probable structure of the T cell antigen receptor. EMBO Journal, 10, 1643-1651.
41. McDermott, G., Prince, S. M., Freer, A. A., Hawthornthwaite-Lawless, A. M., Papiz, M. Z., Cogdell, R. J. and Isaacs, N. W. (1995) Crystal structure of an integral membrane light-harvesting complex from photosynthetic bacteria. Nature, 374, 517-521.
42. Mitaku, S., Suzuki, K., Odashima, S., Ikuta, K., Suwa, M., Kukita, F., Ishikawa, M. and Itoh, H (1995) Interaction stabilizing tertiary structure of bacteriorhodopsin studied by denaturation experiments. Proteins, 22, 350-362.
43. Morton, H. C., van den Herik-Oudijk, I. E., Vossebeld, P., Snijders, A., Verhoeven, A. J., Capel, P. J. A. and van de Winkel, J. G. J. (1995) Functional association between the human myeloid immunoglobulin A Fc receptor (CD89) and FcR gamma chain. Molecular basis for CD89/FcR gamma chain association. Journal of Biological Chemistry, 270, 29781-29787.
44. Nagarajan, S., Chesla, S., Cobern, L., Anderson, P., Zhu, C. and Selvaraj, P. (1995) Ligand binding and phagocytosis by CD16 (Fc gamma receptor III) isoforms. Phagocytic signaling by associated zeta and gamma subunits in Chinese hamster ovary cells. Journal of Biological Chemistry, 270, 25762-25770.
45. Orloff, D. G., Ra, C., Frank, S. J., Klausner, R. D. and Kinet, J.-P. (1990) Family of disulfide-linked dimers containing the ς-chain and eta-chain of the T cell receptor and the γ-chain of Fc-receptors. Nature, 347, 189-191.
46. Pakula, A. A. and Simon, M. I. (1992) Determination of transmembrane protein-structure by disulfide cross-linking: the Escherichia coli Tar receptor. Proceedings of the National Academy of Sciences, USA, 89, 4144-4148.
47. Pfefferkorn, L. C. and Yeaman, G. R. (1994) Association of IgA Fc receptors (FcαR) with FcεRI γ2 subunits in U937 cells: aggregation induces the tyrosine phosphorylation of γ2. Journal of Immunology, 153, 3228-3236.
48. Popot, J. L. and Engelman. D. M. (1990) Membrane-protein folding and oligomenzation: the two-stage model. Biochemistry, 29, 4031-4037.
49. Rashin, A. A., Iofin, M. and Honig, B. H. (1986) Internal cavities and buried waters in globular proteins. Biochemistry. 25, 3619-3625.
50. Rutledge, T., Cosson, P., Manolios, N., Bonifacino, J. S. and Klausner, R. D. (1992) Transmembrane helical interactions: ς-chain dimerization and functional association with the T cell antigen receptor. EMBO Journal, 11, 3245-3254.
51. Salmerön, A., Borroto, A., Fresno, M., Crumpton, M. J., Ley, S. C. and Alarcon, B. (1995) Transferrin receptor induces tyrosine phosphorylation in T cells and is physically associated with the TCR ς-chain. Journal of Immunology, 154, 1675-1683.
52. Scholl, P. R. and Geha, R. S. (1993) Physical association between the high-affinity IgG receptor (FcγRI) and the gamma-subunit of the high-affinity IgE receptor (FcεRIγ). Proceedings of the National Academy of Sciences, USA, 90, 8847-8850.
53. Singer, S. J. (1971) The molecular organisation of membranes. In Structure and Function of Biological Membranes, L. I. Rothfield, ed (Academic Press, New York), pp. 145-222
54. Singer, S. J. (1990) The structure and insertion of integral proteins in membranes Annual Review of Cell Biology, 6, 247-296.
55. Smith, S. O., Smith, C. S. and Bormann, B. J. (1996) Strong hydrogen bonding interactions involving a buried glutamic acid in the transmembrane sequence of the neu/erbB-2 receptor. Nature Structural Biology, 3, 252-258.
56. Stemberg, M. J. E. and Gullick, W. J. (1989). Neu receptor dimerization. Nature, 339, 587.
57. Sternberg, M. J. E. and Gullick, W. J. (1990) A sequence motif in the transmembrane region of growth factor receptors with tyrosine kinase activity mediates dimerization. Protein Engineering. 3, 245-248.
58. Suwa, M., Hirokawa, T. and Mitaku, S (1995) A continuum theory for the prediction of lateral and rotational positioning of α-helices in membrane proteins: bacteriorhodopsin. Proteins: Structure, Function and Genetics, 22, 363-377.
59. Tan. L., Turner, J. and Weiss, A. (1991) Regions of the T cell receptor α-chains and J-chains that are responsible for interactions with CD3. Journal of Experimental Medicine, 173, 1247-1256.
60. Treutlein, H. R., Lemmon, M. A., Engelman, D. M and Brunger, A. T. (1992) The Glycophorin A transmembrane domain dimer: sequence-specific propensity for a right-handed supercoil of helices. Biochemistry, 31, 12726-12733.
61. Unwin, N. (1993) Neurotransmitter action - opening of ligand-gated ion channels. Cell, 72, 31-41.
62. von Heijne, G (1994) Membrane proteins, from sequence to structure. Annual Review of Biophysics and Biomolecular Structure, 23, 167-192.
63. Wagtmann, N., Biassoni, R., Cantoni, C., Verdiani, S., Malnati, M. S., Vitale, M., Bottino, C., Moretta, L., Moretta, A. and Long, E. O. (1995) Molecular clones of the p58 NK cell receptor reveal immunoglobulin-related molecules with diversity in both the extra- and intracellular domains. Immunity, 2, 439-449.
64. Wang, J and Pullman, A. (1991) Do helices in membranes prefer to form bundles or stay dispersed in the lipid phase. Biochimica et Biophysica Acta, 1070, 493-496.
65. Weinberg, R. A. (1991) There are two large questions. FASEB Journal, 5, 78.
66. Weiner, D. B., Liu, J., Cohen, J. A., Williams, W. V. and Green, M. I. (1989) A point mutation in the neu oncogene mimics ligand induction of receptor aggregation. Nature, 339, 230-231.
67. Weissman, A. M., Frank, S. J., Orloff, D. G., Mercep, M., Ashwelt, J. D. and Klausner, R. D. (1989) Role of the ς-chain in the expression of the T cell antigen receptor: genetic reconstitution studies. EMBO Journal, 8, 3651-3656.
68. Whitley, P., Nilsson, L. and von Heijne, G. (1993) Three-dimensional model for the membrane domain of Escherichia coli leader peptidase based on disulfide mapping. Biochemistry, 32, 8534-8539.
69. Zhang, G. P., Young, J. R., Tregaskes, C. A., Sopp, P. and Howard, C. J (1995) Identification of a novel class of mammalian Fc-gamma receptor. Journal of Immunology, 155, 1534-1541.