In vivo and in vitro sequence diversity of the V3 env region of HIV type 1 from the Ivory Coast

AIDS Research and Human Retroviruses

Volumn 12, Issue 11, 1996, Pages 1073-1075

  Audoly, Gilles ^a   Fillon, Sophie ^a   Pinay, Philippe ^b   Desgranges, Claude ^a  

^a INSERM   (France)

^b Centre National de Transfusion Sanguine   (Côte d’Ivoire)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA; VIRUS PROTEIN; VIRUS RNA;

AFRICA; AMINO ACID SEQUENCE; ARTICLE; CLINICAL ARTICLE; FEMALE; GENOTYPE; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; VIRUS ISOLATION; VIRUS MUTATION;

EID: 0029739874     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/aid.1996.12.1073     Document Type: Article

References (14)

1. Louwagie J, Janssens W, Mascola J, Heyndrickx L, Hegerich P, Van Der Groen G, McCutchan FE, and Burke DS: Genetic diversity of the envelope glycoprotein from human immunodeficiency virus type 1 isolates from African origin. J Virol 1995;69:263-271.
2. Louwagie J, McCutchan FE, Mascola J, Eddy G, Fransen K, Peeters M, Van Der Groen G, and Burke D: Genetic subtypes of HIV-1. AIDS Res Hum Retroviruses 1993;9:147-150.
3. Sharp PM, Robertson DL, Gao F, and Hahn BH: Origins and diversity of human immunodeficiency viruses. AIDS 1994;8:S27-S42.
4. Gürtler LG, Hauser PH, Eberle J, von Brunn A, Knapp S, Zekeng L, Tsague JM, and Kaptue L: A new subtype of human immunodficiency virus type 1 (MVP-5180) from Cameroon. J Virol 1994; 68:1581-1585.
5. Janssens W, Heyndrickx L, Van de Peer Y, Bouckaert A, Fransen K, Motte J, Gershy-Damet G, Peelers M, Piot P, and Van der Groen G: Molecular phylogeny of part of the env gene of HIV-1 strains isolated in Côte d'Ivoire. AIDS 1994;8:21-26.
6. Albert J and Fenyö EM: Simple, sensitive, and specific detection of human immunodeficiency virus type 1 in clinical specimens by polymerase chain reaction with nested primers. J Clin Microbiol 1990;28:1560-1564.
7. Thompson JD, Higgins DG, and Gibson TJ: CLUSTAL W - Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-4680.
8. Saitou N and Nei M: The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406-425.
9. Felsenstein J: PHYLIP: Phylogeny interference package. Cladistics 1989;5:164-166.
10. Myers G, Korber B, Wain-Hobson S, Smith RF, and Pavlakis GN: Human Retroviruses and AIDS: A Compilation and Analysis of Nucleic Acid and Amino Acid Sequences. Los Alamos National Laboratory, Los Alamos, New Mexico, 1993.
11. Milich L, Margolin B, and Swanstrom R: V3 loop of the human immunodeficiency virus type 1 Env protein: Interpreting sequence variability. J Virol 1993;67:5623-5634.
12. Chesebro B, Wehrly K, Nishio J, and Ferryman S: Macrophagetropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: Definition of critical amino acids involved in cell tropism. J Virol 1992;66:6547-6554.
13. Sabino E, Pan L-Z, Cheng-Mayer C, and Mayer C: Comparison of in vivo plasma and peripheral blood mononuclear cell HIV-1 quasispecies to short-term tissue culture isolates: An analysis of Tat and C2-V3 Env regions. AIDS 1994;8:901-909.
14. Kusumi K, Conway B, Cunningham S, Berson A, Evans C, Iversen AKN, Colvin D, Gallo MV, Coutre S, Shpaer EG, Faulkner DV, DeRonde A, Volkman S, Williams C, Hirsch MS, and Mullins JI: Human immunodeficiency virus type 1 envelope gene structure and diversity in vivo and after cocultivation in vitro. J Virol 1992;66: 875-885.