Identification of three highly expressed replacement histone H3 genes of alfalfa

Mitochondrial DNA

Volumn 6, Issue 3, 1996, Pages 137-146

  Robertson, A J ^a   Kapros, T ^a   Dudits, D ^a   Waterborg, J H ^b  

^a UNIVERSITY OF MISSOURI KANSAS CITY   (United States)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

Author keywords

Alfalfa; histone H3; intron; polypyrirnidine; replacement histone

Indexed keywords

ARABIDOPSIS; MEDICAGO SATIVA;

HISTONE; MESSENGER RNA;

AGAR GEL ELECTROPHORESIS; ALFALFA; AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; BIOSYNTHESIS; CELL CULTURE; CELL CYCLE; CHEMISTRY; GENE; GENE DOSAGE; GENE EXPRESSION REGULATION; GENETICS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; INTRON; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; POLYMERASE CHAIN REACTION;

AMINO ACID SEQUENCE; ARABIDOPSIS; BASE SEQUENCE; CELL CYCLE; CELLS, CULTURED; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CLONING, MOLECULAR; ELECTROPHORESIS, AGAR GEL; GENE DOSAGE; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; HISTONES; INTRONS; MEDICAGO SATIVA; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; RNA, MESSENGER;

EID: 0029693912     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/10425179609010201     Document Type: Article

References (47)

1. Chaboute M.E., Chaubet N., Philipps G., Ehling M. and Gigot C. (1987). Genomic organization and nucleotide sequences of two histone H3 and two histone H4 genes of Arabidopsis thaliana. Plant Mol. Biol 8, 179-191.
2. Chaboute M.E., Chaubet N., Clement B., Gigot C. and Philipps G. (1988). Polyadenylation of histone H3 and H4 mRNAs in dicotyledonous plants. Gene 71, 217-223.
3. Chaboute M.E., Chaubet N., Gigot C. and Philipps G. (1993). Histones and histone genes in higher plants: structure and genomic organization. Biochirnie 75, 523-531. (Pubitemid 23305215)
4. Chaubet N., Chaboute M.E., Philipps C. and Gigot C. (1987). Histone genes in higher plants organization and expression. Dev. Genet. 8, 461-474.
5. Chaubet N., Clement B. and Gigot C. (1992). Genes encoding a histone H3.3-like variant in Arabidopsis contain intervening sequences. J. Mol. Biol. 225, 569-574.
6. Dalton S. and Wells J.R. (1988). A gene-specific promotor element is required for optimal expression of the histone H1 gene in S-phase. EMSOI. 7, 49-56.
7. Desjardins E. and Hay N. (1993). Repeated CT elements bound by zinc-finger proteins control the absolute and relative activities of the two principal human c-myc promoters. Mol. Cell. Biol. 13, 5710-5724. (Pubitemid 23260673)
8. Firulli A.B., Maibenco D.C. and Kinniburgh A.J. (1994). Triplex formation ability of a c-myc promoter element predicts promoter strength. Arch. Biochem. Biophys. 310, 236-242. (Pubitemid 24171491)
9. Hendzel M.J. and Davie J.R. (1990). Nucleosomal histones of transcriptionally active competent chromatin preferentially exchange with newly synthesized histones in quiescent chicken erythrocytes. Biochem. J. 271,67-73. (Pubitemid 20331199)
10. Jhingan A.K. (1992a). Efficient procedure for DNA extraction from lyophilized plant material. Meth. Mol. Cell. Biol. 3, 185-187. (Pubitemid 23069487)
11. Jhingan A.K. (1992b). A novel technology for DNA isolation. Meth. Mol. Cell. Biol. 3, 15-22.
12. Kapros T. and Waterborg J.H. (1995). Rapid extraction of multiple RNA samples from plant suspension cells. Focus 17, 20-21.
13. Kapros T., Bögre L., Németh K., Bakó L., Györgyey J., Wu S.-C. and Dudits D. (1992). Differential expression of histone H3 gene variants during cell cycle and somatic embryogenesis in alfalfa. Plant Physiol. 98, 621-625.
14. Kapros T., Stefanov I., Magyar Z., Ocsovszky I. and Dudits D. (1993). A short histone H3 promotor from alfalfa specifies expression in S phase cells and meristems. In Vitro Cell. Dev. Biol. 29, 27-32.
15. Kapros T., Robertson A.J. and Waterborg J.H. (1994). A simple method to make better probes from short DNA fragments. Mol. Biotechnol. 2, 95-98.
16. Kapros T., Robertson A.J. and Waterborg J.H. (1995). Histone H3 transcript stability in alfalfa. Plant Mol. Biol. 28, 901-914.
17. Kolluri R., Torrey T.A. and Kinniburgh A.J. (1992). A CT promoter element binding protein: definition of a double-strand and a novel single-strand DNA binding motif. Nucleic Acids Res. 20, 111-116.
18. Lewin B. (1994) Genes V. Oxford University Press, Oxford.
19. Lu Q., Wallrath L.L., Granok H. and Elgin S.C. (1993). (CT)n (GA)n repeats and heat shock elements have distinct roles in chromatin structure and transcriptional activation of the Drosophila hsp26 gene. Mol. Cell. Biol. 13, 2802-2814. (Pubitemid 23133952)
20. Maher L.J. (1992). DNA triple-helix formation: an approach to artificial gene repressors ? Bioessays 14, 807-815.
21. Manfioletti G. and Schneider C. (1988). A new and fast method for preparing high quality lambda DNA suitable for sequencing. Nucleic Acids Res. 16, 2873-2884.
22. Mikami K. and lwabuchi M. (1993) Regulation of cell cycle-dependent gene expression. In Verma D.P.S. (ed.), Control of Plant Gene Expression (Boca Raton, FL: CRC Press), pp. 51-68.
23. Mody R. and Paul S. (1990). A specificity enhancer for Polymerase Chain Reactions that reduces non-specific priming by degenerate primers. Clontech 5, 1-2.
24. Morris D.R., Kakegawa T., Kaspar R.L. and White M.W. (1993). Polypyrimidine tracts and their binding proteins: regulatory sites for posttranscriptional modulation of gene expression. Biochemistry 32, 2931-2937. (Pubitemid 23110132)
25. O'Donnell K.H. and Wensink P.C. (1994). GAGA factor and TBFl bind DNA elements that direct ubiquitous transcription of the α -tubulin gene. Nucleic Acids Res. 22, 4712-4718. (Pubitemid 24354805)
26. Ohtsubo N., Nakayama T., Terada R., Shimamoto K. and lwabuchi M. (1993). Proximal promoter region of the wheat histone H3 gene confers S phase-specific gene expression in transformed rice cells. Plant Mol. Biol. 23, 553-565. (Pubitemid 2019096)
27. Ridsdale J.A. and Davie J.R. (1987). Chicken erythrocyte polynucleosomes which are soluble at physiological ionic strength and contain linker histones are highly enriched in beta-globin gene sequences. Nucleic Acids Res. 15, 1081-1096. (Pubitemid 17012897)
28. Sambrook J., Fritsch E.F. and Maniatis T., Eds. (1989) Molecular Cloning. A laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
29. Sarkar P.S. and Brahmachari S.K. (1992). Intramolecular triplex potential sequence within a gene down-regulates its expression in vivo. Nucleic Acids Res. 20, 5713-5718.
30. Schuurman R. and Keulen W. (1991). Modified protocol for DNA sequence analysis. BioTechniques 10, 185.
31. Seto D. (1990). An improved method for sequencing double stranded plasmid DNA from minipreps using DMSO and modified template preparation. Nucleic Acids Res. 18, 5905-5906.
32. Smith K.T., Long C.M., Bowman B. and Manos M.M. (1990). Using cosolvents to enhance PCR amplification. Amplific. 5, 16-17.
33. Tabata T., Terayama C., Mikami K., Uchiyama H. and lwabuchi M. (1987). An accurate transcription of wheat histone genes in sunflower cells. Plant Cell Physiol. 28, 73-82.
34. Thatcher T.H., MacGaffey J., Bowen J., Horowitz S., Shapiro D.L. and Gorovsky M.A. (1994). Independent evolutionary origin of histone H3.3-like variants of animals and Tetrahymena. Nucleic Acids Res. 22, 180-186. (Pubitemid 24160933)
35. Tsukiyama T., Becker P.B. and Wu C. (1994). ATPdependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor. Nature 367, 525-532. (Pubitemid 24055509)
36. Van Holde K.E. (1989) Chromatin. (New York: Springer Verlag), pp. 1-497.
37. Wallrath L.L., Lu Q., Granok H. and Elgin S.C. (1994). Architectural variations of inducible eukaryotic promoters: preset and remodeling chromatin structures. Bioessays 16,165-170
38. Waterborg J.H. (1990). Sequence analysis of acetylation and methylation of two histone H3 variants of alfalfa. J. Biol. Chem.265,17157-17161
39. Waterborg J.H. (1991). Multiplicity of histone H3 variants in wheat, barley, rice and maize. Plant Physiol. 96, 453-458. (Pubitemid 21914034)
40. Waterborg J.H. (1992). Existence of two histone H3 variants in dicotyledonous plants and correlation between their acetylation and plant genomesize. PlantMol. Biol. 18, 181-187.
41. Waterborg J.H. (1 993). Histone synthesis and turnover in alfalfa. Fast loss of highly acetylated replacement histone H3.2.J. Biol. Chem. 268, 4912-4917. (Pubitemid 23081611)
42. Waterborg J.H., Harrington R.E. and Winicov I. (1989). Differential histone acetylation in alfalfa (Medicago sativa) due to growth in NaCl: Responses in salt stressed and salt tolerant callus cuftures. Plant Physiol. 90, 237-245.
43. Wells J.R.E., Coles L.S. and Robins A.J. (1989) Organization of histone genes and their variants. In Hnilica L.S., Stein G.S. and Stein J.L. (eds), Histones and Other Basic Proteins. (Boca Raton, FL: CRC Press), pp. 253-267.
44. Winicov I., Maki D.H., Waterborg J.H., Riehm M.R. and Harrington R.E. (1988). Characterization of the alfalfa (Medicago sativa) genome by DNA reasmiation. Plant Mol. Biol. 10, 369-371.
45. Wu S.-C., Bögre L., Vincze E., Kiss G.B. and Dudits D. (1988). Isolation of an alfalfa histone H3 gene: structure and expression. PlantMol. Biol. 11, 641-650.
46. Wu S.-C., Györgyey J. and Dudits D. (1989). Polyadenylated H3 histone transcripts and H3 histone variants in alfalfa. Nucleic Acids Res. 17, 3057-3063.
47. Zweidler A. (1980). Nonallelic histone variants in development and differentiation. Dev. Biochem. 15, 47-56.