Sherpa: A Macintosh-based expert system for the interpretation of electrospray ionization LC/MS and MS/MS data from protein digests

Rapid Communications in Mass Spectrometry

Volumn 10, Issue 6, 1996, Pages 679-687

  Taylor, J Alex ^a   Walsh, Kenneth A ^a   Johnson, Richard S ^a,b  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^b AMGEN INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EXPERT SYSTEMS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PROTEINS;

GLYCOSYLATED; LIQUID CHROMATOGRAPHY - MASS SPECTROMETRIES; LIQUID CHROMATOGRAPHY-MASS SPECTROMETRY-MASS SPECTROMETRIES; MASS SPECTROMETRY DATA; PHOSPHORYLATED PEPTIDES; PROTEIN DIGESTS; PROTEIN SEQUENCES; SIMPLE++; TANDEM MASS SPECTROMETRY; TANDEM-MASS SPECTROMETRY;

ELECTROSPRAY IONIZATION;

HEMOGLOBIN; PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CATTLE; EXPERT SYSTEM; GLYCOSYLATION; HYDROLYSIS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MOLECULAR GENETICS; PHOSPHORYLATION; PROTEIN PROCESSING;

AMINO ACID SEQUENCE; ANIMALS; CATTLE; CHROMATOGRAPHY, LIQUID; EXPERT SYSTEMS; GLYCOSYLATION; HEMOGLOBINS; HYDROLYSIS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PHOSPHORYLATION; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEINS;

EID: 0029688766     PISSN: 09514198     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0231(199604)10:6<679::AID-RCM528>3.0.CO;2-Q     Document Type: Article

References (29)

1. J. B. Fenn, M. Mann, C. K. Meng, S. F. Wong and C. M. Whitehouse, Science 246, 64 (1989).
2. K. Mock, M. Hail, I. Mylchreest, J. Zhou, K. Johnson and I. Jardine, J. Chromatogr. 646, 169 (1993).
3. V. Ling, A. W. Guzzetu, E. Canova Davis, J. T. Stults, W. S. Hancock, T. R. Covey and B. I. Shushan, Anal. Chem. 63, 2909 (1991).
4. S. A. Carr, M. E. Hemling, M. F. Bean and G. D. Robers, Anal. Chem. 63, 2802 (1991).
5. T. R. Covey, E. C. Huang and J. D. Henion, Anal. Chem. 63, 1193 (1991).
6. K. Biemann, Methods Enzymol. 193, 455 (1990).
7. D. F. Hunt, J. R. Yates, III, J. Shabanowitz, S. Winston and C. R. Hauer, Proc. Natl. Acad. Sci. USA 83, 6233 (1986).
8. P. J. Watkins, I. Jardine and J. X. Zhou, Biochem. Soc. Trans. 19, 957 (1991).
9. R. Bonner and B. Shushan, Rapid Commun. Mass Spectrom. 9, 1067 (1995).
10. N. K. Tonks, C. D. Diltz and E. H. Fischer, J. Biol. Chem. 263, 6722 (1988).
11. N. K. Tonks, C. D. Diltz and E. H. Fischer, J. Biol. Chem. 263, 6731 (1988).
12. K. Biemann, Methods Enzymol. 193, 886 (1990).
13. J. K. Eng, A. L. McCormack and J. R. Yates, III, J. Am. Soc. Mass. Spectrom. 5, 916 (1994).
14. C. D. Thulin and K. A. Walsh, Biochemistry 34, 8687 (1995).
15. C. D. Thulin and K. A. Walsh, in Techniques in Protein Chemistry, Vol. VI (J. W. Crabb, Ed.), Academic Press, Inc., 1995, p. 55.
16. K. A. Resing, R. S. Johnson, and K. A. Walsh, Biochemistry 34, 9477 (1995).
17. A. P. Hunter and D. E. Games, Rapid Commun. Mass Spectrom. 9, 42 (1995).
18. S. A. Carr, M. J. Huddleston and M. F. Bean, Protein Sci. 1, 183 (1993).
19. R. G. Spiro and V. D. Bhoyroo, J. Biol. Chem. 249, 5704 (1974).
20. A. S. Edge and R. G. Spiro, J. Biol. Chem. 262, 16135 (1987).
21. B. Nilsson, N. E. Nord'en and S. Svensson, J. Biol. Chem. 254, 4545 (1979).
22. K. F. Medzihradszky, B. L. Gillece Castro, C. A. Settineri, R. R. Townsend, F. R. Masiarz and A. L. Burlingame, Biomed. Environ. Mass Spectrom. 19, 777 (1990).
23. M. F. Bean, R. S. Annan, M. E. Hemling, M. Mentzer, M. J. Huddleston, and S. A. Carr, in Techniques in Protein Chemistry, Vol. VI, (J. W. Crabb, Ed.), Academic Press, Inc., 1995, p. 107.
24. P. L. Derby, J. Wypych, R S. Rush, C. L. Clogston and M. F. Rohde, in Techniques in Protein Chemistry, Vol. V (J. W. Crabb, Ed.), Academic Press, Inc., 1994, p. 89.
25. S. Honda, A. Makino, S. Suzuki and K. Kakehi, Anal. Biochem. 191, 228 (1990).
26. K. Maemura and M. Fukuda, J. Biol. Chem 267, 24379 (1992).
27. M. Manneberg, A. Friedlein, H. Kurth, H. W. Lahm and M. Fountoulakis, Protein Sci. 3, 30 (1994).
28. C. A. Settineri, K. F. Medzihradszky, F. R. Masiarz, A. L. Burlingame, C. Chu and C. George Nascimento, Biomed. Environ. Mass Spectrom. 19, 665 (1990).
29. M. S. Stoll, E. F. Hounsell, A. M. Lawson, W. G. Chai, and F. Z. Ten, Eur. J. Biochemistry 189, 499 (1990).