DNA-Binding properties of the yeast transcriptional activator, Gcr1p

Yeast

Volumn 12, Issue 4, 1996, Pages 307-317

  Huie, Michael A ^a,b   Baker, Henry V ^a  

^a UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Bent DNA; Glycolytic enzyme gene regulator; Raplp

Indexed keywords

GLYCOLYTIC ENZYME;

ARTICLE; CONTROLLED STUDY; DNA BINDING; GENE EXPRESSION; GLYCOLYSIS; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

BASE SEQUENCE; BINDING SITES; DNA; DNA-BINDING PROTEINS; FUNGAL PROTEINS; MOLECULAR SEQUENCE DATA; SACCHAROMYCES CEREVISIAE; TRANS-ACTIVATORS;

EID: 0029669997     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(19960330)12:4<307::AID-YEA912>3.0.CO;2-C     Document Type: Article

References (48)

1. Affolter, M., Percival-Smith, A., Muller, M. and Leupin, W. (1990). DNA binding properties of the purified Antennapedia homeodomain. Proc. Natl. Acad Sci. USA 87, 4093-4097.
2. Ausubel, F. M., Brent, R., Kingston, R. E., et al. (Eds) (1989). Current Protocols in Molecular Biology. Greene Publishing Associates and Wiley-Interscience, New York.
3. Baker, H. V. (1986). Glycolytic gene expression in Saccharomyces cerevisiae: nucleotide sequence of GCR1. null mutations, and evidence for expression. Mol. Cell. Biol. 6, 3774-3784.
4. Baker, H. V. (1991). GCR1 of Saccharomyces cerevisiae encodes a DNA binding protein whose binding is abolished by mutations in the CTTCC sequence motif. Proc. Natl. Acad. Sci. USA 88, 9443-9447.
5. Bitter, G. A., Chang, K. K. H. and Egan, K. M. (1991). A multi-component upstream activation sequence of the Saccharomyces cerevisiae glyceraldehyde-3-phosphate dehydrogenase gene promoter. Mol. Gen. Genet. 231, 22-32.
6. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microquantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 72, 248-254.
7. Brandl, C. J. and Struhl, K. (1990). A nucleosome-positioning sequence is required for GCN4 to activate transcription in the absence of a TATA element. Mol. Cell. Biol. 10, 4256-4265.
8. Brindle, P. K., Holland, J. P., Willett, C. E., Innis, M. A. and Holland, M. J. (1990). Multiple factors bind the upstream activation sites of the yeast enolase genes ENO1 and ENO2: ABF1 protein like repressor activator protein RAP1, binds cis-acting sequences which modulate repression or activation of transcription. Mol. Cell. Biol. 10, 4872-4895.
9. Buchman, A. R., Lue, N. F. and Kornberg, R. D. (1988). Connections between transcriptional activators, silencers, and telomeres as revealed by functional analysis of a yeast DNA-binding protein. Mol. Cell. Biol. 8, 5086-5099.
10. Chadwick, P., Pirrotta, V., Steinberg, R., Hopkins, N. and Ptashne, M. (1970). The lambda and 434 phage repressors. Cold Spring Harbor Symp. Quant. Biol. XXXV, 283-294.
11. Chambers, A., Stanway, C., Kingsman, A. J. and Kingsman, S. M. (1988). The UAS of the yeast PGK gene is composed of multiple functional elements. Nucl. Acids Res. 16, 8245-8260.
12. Chambers, A., Stanway, C., Tsang, J. S. H., Henry, Y., Kingsman, A. J. and Kingsman, S. M. (1990). ARS binding factor 1 binds adjacent to RAP1 at the UASs of the yeast glycolytic genes PGK and PYK. Nucl. Acids Res. 18, 5393-5399.
13. G and functions as a powerful auxiliary activator. Genes Dev. 4, 503-514.
14. Ciriacy, M., Freidel, K. and Lohning, C. (1991). Characterization of trans-acting mutations affecting Ty and Ty-mediated transcription in Saccharomyces cerevisiae. Curr. Genet. 20, 441-448.
15. Clifton, D. and Fraenkel, D. G. (1981). The gcr1 (glycolysis regulation) mutation of Saccharomyces cerevisiae. J. Biol. Chem. 256, 13074-13078.
16. Clifton, D., Weinstock, S. B. and Fraenkel, D. G. (1978). Glycolysis mutants of Saccharomyces cerevisiae. Genetics 88, 1-11.
17. Devlin, C., Tice-Baldwin, K., Shore, D. and Arndt, K. T. (1991). RAP1 is required for BAS1/BAS2- and GCN4-dependent transcription of the yeast HIS4 gene. Mol. Cell. Biol. 11, 3642-3651.
18. Ferrari, S., Harley, V. R., Pontiggia, A., Goodfellow, P. N., Lovell-Badge, R. and Bianchi, M. (1992). SRY, like HMG1, recognizes sharp angles in DNA. EMBO J. 11, 4497-4506.
19. Fried, M. and Crothers, D. M. (1981). Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucl. Acids Res. 9, 6505-6525.
20. Friedman, D. I. (1988). Integration host factor: a protein for all reasons. Cell 55, 545-554.
21. Garner, M. M. and Revzin, A. (1981). A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: applications to components of Escherichia coli lactose operon regulatory system. Nucl. Acids Res. 9, 3037-3060.
22. Giese, K., Amsterdam, A. and Gosschedl, R. (1991). DNA-binding properties of the HMG domain of the lymphoid-specific transcriptional regulator LEF-1. Genes Dev. 5, 2567-2578.
23. Giese, K., Cox, J. and Grosschedl, R. (1992). The HMG domain of lymphoid enhancer factor 1 bends DNA and facilitates assembly of functional nucleoprotein structures. Cell 69, 185-195.
24. Gill, G. and Ptashne, M. (1988). Negative effect of the transcriptional activator GAL4. Nature 334, 721-724.
25. Harley, V., Jackson, D., Hextall, P., et al. (1992). DNA binding activity of recombinant SRY from normal males and XY females. Science 255, 453-456.
26. Hochschild, A. and Ptashne, M. (1986). Cooperative binding of lambda repressors to sites separated by integral turns of the DNA helix. Cell 44, 681-687.
27. Huie, M. A., Scott, E. W., Drazinic, C. M., et al. (1992). Characterization of the DNA-binding activity of GCR1: in vivo evidence for two GCR1-binding sites in the upstream activating sequence of TPI of Saccharomyces cerevisiae. Mol. Cell Biol. 12, 2690-2700.
28. Janson, L. and Pettersson, U. (1990). Cooperative interactions between transcription factors Sp1 and OTF-1. Proc. Natl. Acad. Sci. USA 87, 4732-4736.
29. Ju, Q., Morrow, B. E. and Warner, J. R. (1990). REB1, a yeast DNA-binding protein with many targets, is essential for growth and bears some resemblance to the oncogene myb. Mol. Cell. Biol. 10, 5226-5234.
30. Kahn, J. D. and Crothers, D, M. (1992). Protein-induced bending and DNA cyclization. Proc. Natl. Acad. Sci. USA 89, 6343-6347.
31. Letovsky, J. and Dynan, W. S. (1989). Measurement of the binding of transcription factor Sp1 to a single GC box recognition sequence. Nucl. Acids Res. 13, 2639-2653.
32. Maniatis, T., Fritsch, E. F. and Sambrook, J. (1982). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
33. Nasrin, N., Buggs, C., Kong, X. F., Carnazza, J., Goebl, M. and Alexender-Bridbes, M. (1991). DNA-binding properties of the product of the testis-determining gene and a related protein. Nature 354, 317-320.
34. Nishizawa, M., Araki R. and Teranishi, Y. (1989). Identification of an upstream activating sequence and an upstream repressible sequence of the pyruvate kinase gene of the yeast Saccharomyces cerevisiae. Mol. Cell. Biol. 9, 442-451.
35. Ogden, J. E., Stanway, C. A., Kim, S., Mellor, J., Kingsman, A. J. and Kingsman, S. M. (1986). Efficient expression of the Saccharomyces cerevisiae PGK gene depends upon an upstream activation sequence but does not require TATA sequence. Mol. Cell. Biol. 6, 4335-4343.
36. Prentki, P., Pham, M.-H. and Galas, D. J. (1987). Plasmid permutation vectors to monitor DNA bending. Nucl. Acids Res. 15, 10060.
37. Rhode, P. R., Sweder, K. S., Oegema, K. F. and Campbell, J. L. (1989). The gene encoding ARS-binding factor I is essential for the viability of yeast. Genes Dev. 3, 1926-1939.
38. Riggs, A. D., Suzuki, H. and Bourgeois, S. (1970). lac repressor-operator interactions. J. Mol. Biol. 48, 67-83.
39. Schauer, M., Chalepakis, G., Willmann, T. and Beato, M. (1989). Binding of hormone accelerates the kinetics of glucocorticoid and progesterone. Proc. Natl. Acad. Sci. USA 86, 1123-1127.
40. Scott, E. W., Allison, H. E. and Baker, H. V. (1990). Characterization of TPI gene expression in isogenic wild-type and gcr1-deletion mutant strains of Saccharomyces cerevisiae. Nucl. Acids Res. 18, 7099-7107.
41. Scott, E. W. and Baker, H. V. (1993). Concerted action of the transcriptional activators REB1, RAP1, and GCR1 in the high-level expression of the glycolytic gene TPI. Mol. Cell. Biol. 13, 543-550.
42. Shore, D. and Nasmyth, K (1987). Purification and cloning of a DNA binding protein from yeast that binds to both silencers and activator elements. Cell 51, 721-732.
43. Silhavy, T. J., Berman, M. L. and Enquist, L. W. (1984). Experiments with Gene Fusions. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
44. Stanway, C. A., Gibbs, J. M., Kearsey, S. E., Lopez, C. M. and Baker, H. V. (1994). The yeast co-activator GAL11 positively influences transcription of the phosphoglycerate kinase gene, but only when RAP1 is bound to its upstream activation sequence. Mol. Gen. Genet. 243, 207-214.
45. Tornow, J., Zeng, X., Gao, W. and Santangelo, G. M. (1993). GCR1, a transcriptional activator in Saccharomyces cerevisiae, complexes with RAP1 and can function without its DNA binding domain. EMBO J. 12, 2431-2437.
46. Vignais, M. L., Huet, J., Buhler, J.-M. and Sentenac, A. (1990). Contacts between the factor TUF and RPG sequences. J. Biol. Chem. 265, 14669-14674.
47. Vignais, M-.L. and Sentenac, A. (1989). Asymmetric DNA bending induced by the yeast multifunctional factor TUF. J. Biol. Chem. 264, 8463-8466.
48. Wu, H.-M. and Crothers, D. M. (1984). The locus of sequence-directed and protein-induced DNA bending. Nature 308, 509-513.