Automated systems for identification of heterotrophic marine bacteria on the basis of their fatty acid composition

Applied and Environmental Microbiology

Volumn 62, Issue 6, 1996, Pages 2122-2132

  Bertone, S ^a,b   Giacomini, M ^b   Ruggiero, C ^b   Piccarolo, C ^c   Calegari, L ^a  

^a Institute of Microbiology   (Italy)

^b UNIVERSITY OF GENOA   (Italy)

^c Istituto per i Circuiti Elettronici   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

AEROBIC BACTERIUM; ARTICLE; AUTOANALYSIS; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; LIPID COMPOSITION; NONHUMAN; STRAIN DIFFERENCE; VIBRIO;

FATTY ACIDS; HETEROTROPHIC BACTERIA; IDENTIFICATION KEYS;

ALTEROMONAS; DELEYA; OCEANOSPIRILLUM; VIBRIO;

EID: 0029668830     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.62.6.2122-2132.1996     Document Type: Article

References (35)

1. Abel, K., H. De Schmertzing, and J. I. Peterson. 1963. Classification of microorganisms by analysis of chemical composition. J. Bacteriol. 85:1039-1044.
2. Akagawa-Matsushita, M., T. Itoh, Y. Katayama, H. Kuraishi, and K. Yamasato. 1992. Isoprenoid quinone composition of some marine Alteromonas, Marinomonas, Deleya, Pseudomonas and Shewanella species. J. Gen. Microbiol. 138:2275-2281.
3. Aleksander, I., and H. Morton. 1990. Introduction, p. 1-20. In I. Aleksander and H. Morton (ed.), An introduction to neural computing. Chapman & Hall, Ltd., London.
4. Austin, B. 1982. Taxonomy of bacteria isolated from a coastal, marine fish-rearing unit. J. Appl. Bacteriol. 53:253-268.
5. Austin, B. 1988. Taxonomy of marine micro-organisms, p. 45-78. In B. Austin (ed.), Marine microbiology. Cambridge University Press, Cambridge.
6. Beale, R., and T. Jackson. 1992. The multilayer perceptron, p. 63-105. In R. Beale and T. Jackson (ed.), Neural computing: an introduction. IOP Publishing, Philadelphia.
7. Bøe, B., and J. Gjerde. 1980. Fatty acid patterns in the classification of some representatives of the families Enterobacteriaceae and Vibrionaceae. J. Gen. Microbiol. 116:41-49.
8. Bousfield, I. J., G. L. Smith, T. R. Dando, and G. Hobbs. 1983. Numerical analysis of total fatty acid profiles in the identification of coryneform, nocardioform and some other bacteria. J. Gen. Microbiol. 129:375-394.
9. Breschel, T. S., and F. L. Singleton. 1992. Use of the API rapid NTF system for identifying nonfermentative and fermentative marine bacteria. Appl. Environ. Microbiol. 58:21-26.
10. Drucker, D. B. 1974. Chemotaxonomic fatty acid fingerprints of some streptococci with subsequent statistical analysis. Can. J. Microbiol. 20:1723-1728.
11. Eerola, E., and O. Lehtonen. 1988. Optimal data processing procedure for automatic bacterial identification by gas-liquid chromatography of cellular fatty acids. J. Clin. Microbiol. 26:1745-1753.
12. Giacomini, M., and C. Ruggiero. 1994. A user friendly interface for the constructor of taxonomic groups, p. 450-453. In S. Spyzou et al. (ed.), Proceedings of the International Conference or Medical Physics and Biomedical Engineering, 1994, Nicosia, Cyprus, vol. II.
13. Goodfellow, M., and D. E. Minnikin. 1985. Introduction to chemosystematics, p. 1-16. In M. Goodfellow and D. E. Minnikin (ed.). Chemical methods in bacterial systematics. Academic Press Ltd., London.
14. Guckert, J. B., D. B. Ringelberg, D. C. White, R. S. Hansonn, and B. J. Bratina. 1991. Membrane fatty acids as phenotypic markers in the polyphasic taxonomy of methylotrophs within the Proteobacteria. J. Gen. Microbiol. 137:2631-2641.
15. Henningson, P. J., and N. C. Gudmestad. 1991. Fatty acid analysis of phytopathogenic coryneform bacteria. J. Gen. Microbiol. 137:427-440.
16. Huys, G., M. Vancanneyt, R. Coopman, P. Janssen, E. Falsen, M. Altwegg, and K. Kersters. 1994. Cellular fatty acid composition as a chemotaxonomic marker for the differentiation of phenospecies and hybridization groups in the genus Aeromonas. Int. J. Syst. Bacteriol. 44:651-658.
17. Ikemoto, S., H. Kuraishi, K. Kogamata, R. Azuma, T. Suto, and K. Kogamata. 1978. Cellular fatty acid composition in Pseudomonas species. J. Gen. Appl. Microbiol. 24:199-213.
18. Jantzen, E., T. Bergan, and K. Bovre. 1974. Gas chromatography of bacterial whole cell methano-lysates. VI. Fatty acid composition of strains within Micrococcaceae. Acta Pathol. Microbiol. Scand. 82:785-798.
19. Jantzen, E., K. Bryn, T. Bergan, and K. Bovre. 1974. Gas chromatography of bacterial whole cell methanolysates. V. Fatty acid composition of Neisseriae and Moraxellae. Acta Pathol. Microbiol. Scand. 82:769-779.
20. Karnin, E. D. 1990. A simple procedure for pruning back-propagation trained neural networks. IEEE Trans. Neur. Net. 1:239-242.
21. Kersters, K. 1985. Numerical methods in the classification of bacteria by protein electrophoresis, p. 337-368. In M. Goodfellow, D. Jones, and F. G. Priest (ed.), Computer-assisted bacterial systematics. Academic Press Ltd., London.
22. Komagata, K., and K. Suzuki. 1987. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol. 19:161-207.
23. Lambert, M. A., F. W. Hickman-Brenner, J. J. Farmer III, and C. W. Moss. 1983. Differentiation of Vibrionaceae species by their cellular fatty acid composition. Int. J. Syst. Bacteriol. 33:777-792.
24. Lechevalier, M. P. 1977. Lipids in bacterial taxonomy: a taxonomist's view. Crit. Rev. Microbiol. 5:109-210.
25. Miller, L., and T. Berger. 1985. Hewlett-Packard gas chromatography application note 228-41. Hewlett-Packard Co., Palo Alto, Calif.
26. Oliver, J. D., and R. R. Colwell. 1973. Extractable lipids of gram-negative marine bacteria: fatty acid composition. Int. J. Syst. Bacteriol. 23:442-458.
27. Osterhoul, G. J., V. H. Shull, and J. D. Dick. 1991. Identification of clinical isolates of gram-negative nonfermentative bacteria by an automated cellular fatty acid identification system. J. Clin. Microbiol. 29:1822-1830.
28. Pot, B., M. Gillis, B. Hoste, A. Van De Velde, F. Bekaert, K. Kersters, and J. De Ley. 1989. Intra-and intergeneric relationships of the genus Oceanospirillum. Int. J. Syst. Bacteriol. 39:23-34.
29. Rainey, P. B., I. P. Thompson, and N. J. Palleroni. 1994. Genome and fatty acid analysis of Pseudomonas stutzeri. Int. J. Syst. Bacteriol. 44:54-61.
30. Rumelhart, D. E., G. E. Hinton, and R. J. Williams. 1986. Learning internal representation by error back propagation, p. 318-362. In D. E. Rumelhart and J. L. McCleland (ed.), Parallel distributed processing. M.I.T. Press, Cambridge, Mass.
31. Sneath, P. H. A. 1962. The construction of laxonomic groups, p. 289-332. In G. C. Ainsworth and P. H. A. Sneath (ed.), Microbial classification. Cambridge University Press, Cambridge.
32. Stead, D. E. 1992. Grouping of plant-pathogenic and some other Pseudomonas spp. by using cellular fatty acid profiles. Int. J. Syst. Bacteriol. 42:281-295.
33. Stead, D. E., J. E. Sellwood, J. Wilson, and I. Vieny. 1992. Evaluation of a commercial microbial identification system based on fatty acid profiles for rapid, accurate identification of plant pathogenic bacteria. J. Appl. Microbiol. 72:315-321.
34. Tollenaere, T. 1990. SuperSAB: fast adaptive back propagation with good scaling properties. Neural Networks 3:561-573.
35. Yang, P., L. Vauterin, M. Vancanneyt, J. Swings, and K. Kersters. 1993. Application of fatty acid methyl esters for the taxonomic analysis of the genus Xanthomonas. Syst. Appl. Microbiol. 16:47-71.