DNA analysis methods for recognizing species invasion: The example of Codium, and generally applicable methods for algae

Hydrobiologia

Volumn 326-327, Issue , 1996, Pages 29-34

  Coleman, Annette W ^a  

^a BROWN UNIVERSITY   (United States)

Author keywords

Codium; introduced species; ITS; rDNA; RFLPs; seaweed

Indexed keywords

ALGAE; INTRODUCED SPECIES; POPULATION CHARACTERISTICS;

USA;

CODIUM; CODIUM FRAGILE TOMENTOSOIDES;

EID: 0029662862     PISSN: 00188158     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00047784     Document Type: Conference Paper

References (47)

1. Adachi, M., Y. Sako & Y. Ishida, 1994. Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae). J. Phycol. 30: 857-863.
2. Adams, C. R., K. A. Stamer, J. K. Miller, J. G. McNally, M. M. Kirk & D. L. Kirk, 1990. Patterns of organellar and nuclear inhiritance among progeny of two geographically isolated strains of Volvox carteri. Curr. Genet. 18: 141-153.
3. Bakker, R. T., J. L. Olsen, W. T. Stam & C. vandenHoek, 1992. Nuclear ribosomal DNA internal transcribed spacer regions (ITS 1 and ITS 2) define discrete biogeographic groups in Cladophora albida (Chlorophyta). J. Phycol. 28: 839-845.
4. Baldwin, B. G., 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Mol. Phylogenet. Evol. 1: 3-16.
5. Barrat, J., 1994. Ballast-water invasions of Chesapeake Bay studied by scientists. Smithsonian Inst. Res. Reports 76: 1-5.
6. Bird, C. J., W. A. Nelson, E. L. Rice, K. G. Ryan & R. Villemur, 1990. A critical comparison of Gracilaria chilensis and G. sordida (Rhodophyta, Gracilariales). J. appl. Phycol. 2: 375-382.
7. Bird, C. J., E. L. Rice, C. A. Murphy & M. A. Ragan, 1992. Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences. Phycologia 31: 510-522.
8. Bird, C. J., M. A. Ragan, A. T. Critchley, E. L. Rice & R. R. Gutell, 1994. Molecular relationships among the Gracilariaceae (Rhodophyta): further observations on some undetermined species. Eur. J. Phycol.29: 195-202.
9. Buchheim, M. A. & R. L. Chapman, 1991. Phylogeny of the colonial green flagellates: a study of the 18S and 26S rRNA sequence data. BioSystems 25: 85-100.
10. Buchheim, M. A. & R. L. Chapman, 1992. Phylogeny of Carteria (Chlorophyceae) inferred from molecular and organismal data. J. Phycol. 28: 362-374.
11. Carlton, J. T. & J. A. Scanlon, 1985. Progression and dispersal of an introduced alga: Codium fragile ssp. tomentosoides (Chlorophyta) on the Atlantic coast of North America. Bot. mar. 28: 155-165.
12. Coleman, A. W., 1995. Are the impacts of events in the earth's history discernable in the current distributions of freshwater algae? In J. Kristiansen (ed.), Biogeography of Freshwater Algae, (in press).
13. Coleman, A. W. & L. J. Goff, 1991. DNA analysis of eukaryotic algal species. J. Phycol. 27: 463-473.
14. Coleman, A. W., A. Suarez & L. J. Goff, 1994. Molecular delineation of species and syngens in Volvocacean green algae (Chlorophyta). J. Phycol. 30: 80-90.
15. Coleman, A. W., W. F. Thompson & L. J. Goff, 1991. Identification of the mitochondrial genome in the chrysophyte alga Ochromonas danica. J. Protozool. 38: 129-135.
16. Coyer, J. A., D. L. Robertson & R. S. Alberte, 1994. Genetic variability within a population and between diploid/haploid tissue of Macrocystis pyrifera (Phaeophyceae). J. Phycol. 30: 545-552.
17. Destombe, C. & S. E. Douglas, 1991. Rubisco spacer sequence divergence in the rhodophyte alga Gracilaria verrucosa and closely related species. Curr. Genetics 19: 395-398.
18. Fain, S. R., 1992. Interpopulation chloroplast DNA sequence variation in the giant kelp, Macrocystis. J. Phycol. 28 (Suppl.): 16.
19. Fain, S. R., L. D. Druehl & D. L. Baillie, 1988. Repeat and single copy sequences are differentially conserved in the evolution of kelp chloroplast DNA. J. Phycol. 24: 292-302.
20. Goff, L. J. & A. W. Coleman, 1988. The use of plastid DNA restriction endonuclease patterns in delineating red algal species and populations. J. Phycol. 24: 357-368.
21. Goff, L. J. & D. A. Moon, 1993. Amplification of nuclear and plastid genes from algal herbarium specimens and algal spores. J. Phycol. 29: 381-384.
22. Goff, L. J., L. Liddle, P. C. Silva, M. Voytek & A. W. Coleman, 1992. Tracing species invasion in Codium, a siphonous green alga, using molecular tools. Am. J. Bot. 79: 1279-1285.
23. Goff, L. J., D. A. Moon & A. W. Coleman, 1994. Molecular delineation of species and species relationships in the red algal agarophytes Gracilariopsis and Gracilaria (Gracilariales). J. Phycol. 30: 521-537.
24. Harris, E. H., J. E. Boynton, N. W. Gillham, B. D. Burkhart & S. M. Newman, 1991. Chloroplast genome organization in Chlamydomonas. Arch. Protistenk. 139: 183-192.
25. Hommersand, M. H., S. Fredericq & D. W. Freshwater, 1994. Phylogenetic systematics and biogeography of the Gigartinaceae (Gigartinales, Rhodophyta) based on sequence analysis of rbcL. Bot. mar. 37: 193-203.
26. Jupe, E. R., R. L. Chapman & E. A. Zimmer, 1988. Nuclear ribosomal RNA genes and algal phylogeny: the Chlamydomonas example. BioSystems 21: 223-230.
27. Kooistra, W. H. C. R., W. T. Stam, J. L. Olsen & C. van den Hoek, 1992. Biogeography of Cladophoropsis membranacea (Chlorophyta) based on comparisons of nuclear rDNA ITS sequences. J. Phycol. 28: 660-668.
28. Kowallik, K. R., 1989. Molecular aspects and phylogenetic implications of plastid genomes of certain chromophytes. In J. C. Green, B. S. C. Leadbeater & W. L. Diver (eds) The Chromophyte Algae. Systematics Association 38: 101-124.
29. Larson, A., M. M. Kirk & D. L. Kirk, 1992. Molecular phylogeny of the volvocine flagellates. Mol. Biol. Evol. 9: 85-105.
30. Lewis, L. A., L. W. Wilcox, P. A. Fuerst & G. L. Floyd, 1992. Concordance of molecular and ultrastructural data in the study of zoosporic chlorococcalean green algae. J. Phycol. 28: 375-380.
31. Maggs, C. A., S. E. Douglas, J. Fenety & C. J. Bird, 1992. A molecular and morphological analysis of the Gymnogongrus devoniensis (Rhodophyta) complex in the North Atlantic. J. Phycol. 28: 214-232.
32. Manhart, J. R. & R. M. McCourt, 1992. Molecular data and species concepts in the algae. J. Phycol. 28: 730-737.
33. Mayr, E., 1948. The bearing of the new systematics on genetical problems. The nature of species. Adv. in Genet. 2: 205-237.
34. Moore, L. J., 1990. An examination of the chloroplast and mitochondrial DNAs of sexually isolated populations of Pandorina morum Bory de St. Vincent. Ph.D. Thesis, Brown University, Providence, RI. pp. 140.
35. Olmstead, R. G. & J. D. Palmer, 1994. Chloroplast DNA systematics: a review of methods and data analysis. Am. J. Bot. 81: 1205-1224.
36. Olsen, J. L., W. T. Stam, S. Berger & D. Menzel, 1994. 18S rDNA and evolution in the Dasycladales (Chlorophyta): modern living fossils. J. Phycol. 30: 729-744.
37. Palmer, J. E., R. K. Jansen, H. J. Michaels, M. W. Chase & J. R. Manhart, 1988. Chloroplast DNA variation and plant phylogeny. Ann. Missouri bot. Gard. 75: 1180-1206.
38. Patwary, M. U., R. M. MacKay & J. P. van der Meer, 1993. Revealing genetic markers in Gelidium vagum (Rhodophyta) through the random amplified polymorphic DNA (RAPD) technique. J. Phycol. 29: 216-222.
39. Rice, E. L. & C. J. Bird, 1990. Relationships among geographically distant populations of Gracilaria verrucosa (Gracilariales. Rhodophyta) and related species. Phycologia 29: 501-510.
40. Silva, P. C., 1955. The dichotomous species of Codium in Britain. J. mar. biol. Ass. U.K. 2: 7-9.
41. Silva, P. C., 1957. Codium in Scandinavian waters. Svensk Bot. Tidsk. 51: 117-134.
42. Stabile, J. E., J. C. Gallagher & E. T. Wurtzel, 1990. Molecular analysis of intraspecific variation in the marine diatom Skeletonema costatum. Biochem. Syst. Ecol. 18: 5-9.
43. Stabile, J. E., E. T. Wurtzel & J. C. Gallagher, 1992. Comparison of chloroplast DNA and allozyme variation in winter strains of the marine diatom Skeletonema costatum (Bacillariophyta). J. Phycol. 28: 90-94.
44. Van Oppen, M. J. H., O. E. Dickmann, C. Wiencke, W. T. Stam & J. L. Olsen, 1994. Tracking dispersal routes: phylogeography of the arctic-antarctic disjunct seaweed Acrosiphonia arcta (Chlorophyta). J. Phycol. 30: 67-80.
45. Wilcox, L. W., L. A. Lewis, P. A. Fuerst & G. L. Floyd, 1992. Assessing the relationships of autosporic and zoosporic chlorococcalean green algae with 18S rDNA sequence data. J. Phycol. 28: 381-386.
46. Zechman, F. W., E. A. Zimmer & E. C. Theriot, 1994. Use of ribosomal DNA internal transcribed spacers for phylogenetic studies in diatoms. J. Phycol. 30: 507-512.
47. Zimmer, E. A., S. L. Martin, S. M. Beverley, Y. W. Kan & A. C. Wilson, 1980. Rapid duplication and loss of genes coding for the alpha chains of hemoglobin. Proc. Natl. Acad. Sci. USA 77: 2158-2162.