Bacterial abundance and diversity in the Barbados trench determined by phospholipid analysis

FEMS Microbiology Ecology

Volumn 19, Issue 2, 1996, Pages 83-93

  Guezennec, J ^a   Fiala Medioni, A ^b  

^a IFREMER   (France)

^b LABORATOIRE ARAGO   (France)

Author keywords

Community structure; Fatty acid; Microbial biomass

Indexed keywords

FATTY ACID; GLYCEROL ETHER; PHOSPHOLIPID;

ARTICLE; BARBADOS; BIOMASS; GAS CHROMATOGRAPHY; GEOLOGY; LIPID ANALYSIS; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; NONHUMAN; PRIORITY JOURNAL; SEDIMENT; VOLCANO;

ARCHAEA; BACTERIA (MICROORGANISMS); METHYLOCYSTACEAE;

ABUNDANCE; BACTERIA; COMMUNITY STRUCTURE; DEEP SEA; MICROBIAL BIOMASS; PHOSPHOLIPID ANALYSIS;

BARBADOS, BARBADOS TRENCH;

EID: 0029662455     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/0168-6496(95)00078-X     Document Type: Article

References (62)

1. Henry, P., Le Pichon, X., Lallemant, S., Lance, S., Martin, J., Fouche, J.P., Fiala-Medioni, A., Guilhaumou, N., Rostek, F., Pranal, V. and Castrec, M. (1995) Fluid flow in and around a mud volcano field seaward of the Barbados accretionary wedge: Results from 'Manon' cruise. Manuscript submitted.
2. Lallemant, S., Lance, S., Le Pichon, X., Henry, P. and Foucher, J.P. (1993) Diatremes explored within a mud volcano field seaward of the Barbados accretionary wedge. EOS. Trans. Am. Geophys. Union. 74, 583-586.
3. Le Pichon, X., Foucher, J.P., Boulegue, J., Henry, P., Lallemant, S., Benedetti, M., Avedik, F. and Mariotti, A. (1990) Mud volvano field seaward of the barbados Accretionary comples: a submersible survey. J. Geo. Res. 95 (B6), 8931-8943.
4. Guckert, J.B., Anthworth, C.P., Nichols, P.D. and White, D.C. (1985) Phospholipid ester-linked fatty acid profiles as reproductible assays for changes in prokaryotic community structure of estuarine sediments. FEMS Microbiol. Ecol. 31, 147-158.
5. Lechevalier, M.P. (1977) Lipids in bacterial taxonomy-A taxonomist's view. Crit. Rev. Microbiol. 7, 109-210.
6. White, D.C., Bobbie, R.J., Herron, J.S., King, J.D. and Morrison, S.J. (1979) Biochemical measurements of microbial mass and activity from environmental samples. In: Native Aquatic bacteria: Enumeration, Activity and Ecology. ASTM STP 695.
7. Dowling N.J.E., Guezennec, J.G. and White, D.C. (1988) Methods for insight into mechanisms of microbially influenced metal corrosion. In: Biodeterioration (Houghton, D.R., Smith. R.T. and Eggins. H.E.O., Eds.), Elsevier Applied Science, London.
8. Guezennec, J.G. (1991) Influence of cathodic protection of mild steel on the growth of sulphate-reducing bacteria at 35°C in marine sediments. Biofouling, 3, 339-348.
9. White, D.C., Nickels, J.D., King, J.D. and Bobbie, R.J. (1979) Determination of the sedimentary microbial biomass by extractable lipid phosphate. Oecologia 40, 51-62.
10. Bligh, E.G. and Dyer, W.J. (1959) A rapid method of total lipid extraction and purification. Can J. Biochem. Physiol. 37, 911-917.
11. Nichols, P.D., Guckert, J.B. and White, D.C. (1986) Determination of monounsaturated fatty acid double bond position and geometry for microbial monocultures and complex consortia by capillary GC-MS of their dimethyldisulfur adducts. J. Microbiol. Methods 5, 49-55.
12. Parker, J.H., Smith, G.A. Fredrickson, H, Vestal, R and White, D.C.(1982) Sensitive assay based on hydroxy fatty acids from lipopolysaccharide lipid A, for Gram-negative bacteria in sediments. Appl. Environ. Microbiol. 44, (1) 1170-1177.
13. Kates, M. (1964) Bacterial lipids. Adv. Lipid Res. 2, 17-90.
14. Langworthy, T.A., Holzer, G., Zeikus, J.G. and Tornabene, T.G. (1983) Iso and anteiso-branched glycerol diethers of the thermophilic anaerobe Thermodesulfotobacterium commune. Syst. Appl. Microbiol. 4, 1-17.
15. Pauly, G.G. and Van Vleet, E.S. (1986) Acyclic archaebacterial ether lipids in swamp sediments. Geochimic. Cosmochim. Acta 50, 1117-1125.
16. Vincent, P., Pignet, P., Talmont, F., Bozzi, L., Fournet, B., Guezennec, J., Jeanthon, C. and Prieur, D. (1994) Production and characterization of an exopolysaccharide excreted by a deep-sea hydrothermal vent bacterium isolated from the polychaete annelid Alvinella pompejana. Appl. Environ. Microbiol. 60, 4134-4141.
17. Balkwill D.L., Leach, F., Wilson, J.T., McNabb, J.F. and White, D.C. (1988) Equivalence of microbial biomass measures based on membrane lipid and cell wall components, adenosine triphosphate and direct counts in subsurface aquifer sediments. Microbiol. Ecol. 16, 73-84.
18. Nichols, P.D., Mancuso, C.A. and White, D.C. (1987) Measurement of methanotroph and methanogen signature phospholipids for use in assessment of biomass and community structure in model systems. Org. Geochem. 6, 451-461.
19. Baird, B.H. and White, D.C. (1985) Biomass and community structure of the abyssal microbiota determined from the ester-linked phospholipids recovered from Venezuela basin and Puerto Rico trench sediments. Mar. Geol. 68, 217-231.
20. Russel, N.J. and Kukunaga, N. (1990) A comparison of thermal adaptation of membrane lipids in phsychrophilic and thermophilic bacteria. FEMS Microbiol. Rev. 75, 171-182.
21. Baird, B.H., Nivens, D.E., Parker, J.H. and White, D.C. (1985) The biomass, community structure and spatial distribution of the sedimentary microbiota from a high-energy area of the deep-sea. Deep Sea Res. 9, 1089-1099.
22. Harvey, H.R., Richardson, M.D. and Patton, J.S. (1984) Lipid composition and vertical distribution of bacteria in aerobic sediments of the Venezuela basin. Deep Sea Res. 31, 403-413.
23. Deming, J.W. and Colwell, R.R. (1982) Barophilic bacteria associated with digestive tracts of abyssal holothurians. Appl. Environ. Microbiol. 44, 1222-1230.
24. Nelson, D.C., Wirsen, C.O. and Jannasch, H.W. (1989) Characterization of large autotrophic Beggiatoa spp. abundant at hydrothermal vents of the Guaymas basin. Appl. Environ. Microbiol. 55, 2909-2917.
25. Wirsen, C.O., Jannasch, H.W., Wakeham, S.G. and Canuel, E.A. (1987) Membrane lipids of a psychrophilic and barophilic deep-sea bacterium. Curr. Microbiol. 14, 319-322.
26. Jacq, E., Prieur, D., White, D.C., Porter, T. and Geesey, G. (1989) Microscopic examination and fatty acid characterization of filamentous bacteria colonizing substrata around subtidal hydrothermal vents. Arch. Microbiol. 152, 64-71.
27. Jannasch, H.W., Nelson, D.C. and Wirsen, C.O. (1989) Massive natural occurrence of unusually large bacteria (Beggiatoa sp.) at a hydrothermal deep-sea vent site. Nature 342, 834-836.
28. Gillan, F.T. and Hogg, R.W. (1984) A method for the estimation of bacterial biomass and community structure in mangrove associated sediments. J. Microbiol. Methods 2, 275-293
29. Findlay, R.H., Trexler, M.B., Guckert, J.B. and White, D.C. (1990) Laboratory study of disturbance in marine sediments: response of a microbial community. Mar. Ecol. Prog. Ser. 62, 121-133.
30. Findlay, R.H., Moriarty, D.J.W. and White, D.C. (1983) Improved method of determining muramic acid from environmental samples. Geomicrobiology 3, 133-150.
31. Katayama-Fujimura, Y., Tsuzaki, N. and Kuraishi, H. (1982) Ubiquinone, fatty acid and DNA base composition determination as a guide to the taxonomy of the genus Thiobacillus. J. Gen. Microbiol. 128, 1599-1611.
32. Larkin, J.M. (1980) Isolation of Thiothrix in pure culture and observations of a filamentous epiphyte on Thiothrix. Curr. Microbiol. 4, 155-158.
33. Durand P. (1992) Taxonomie des bactéries oxydant les composés soufrés réduits en milieu hydrothermal profond: Cas du Sud-Ouest pacifique. Thèse de l'Université de Bretagne Occidentale. 185 pp.
34. Jannasch, H.W. (1985) The chemosynthetic support of life and the microbial diversity at deep-sea hydrothermal vents. Proc. R. Soc London. 225, 277-297.
35. Jørgensen, B.B. (1982) Ecology of the bacteria of the sulphur cycle with special reference to anoxic-oxic interface environments. Phil. Trans. R. Soc. Lond. B298, 543-561.
36. Fiala-Medioni, A., Boulegue, J., Ohta, S., Felbeck, H. and Mariotti, A. (1993) Source of energy sustaining the Calyptogena populations from deep trenches in subduction zones of Japon. Deep Sea Res. 40 (6), 1241-1258
37. Makula, R.A. (1978) Phospholipid composition of methane-utilizing bacteria. J. Bacteriol. 134, 771-777.
38. Martz, R.F., Sebacher, D.L. and White, D.C. (1983) Biomass measurement of methane-forming bacteria in environmental samples. J. Microbiol. Methods 1, 53-61.
39. Urakami, T. and Komagata, K. (1984) Cellular fatty acid composition and quinone system in methane-utilizing bacteria and methylamine-utilizing bacteria. In: Microbial Growth on C-1 Compounds (Crawford, R.L. and Hanson, R.S., Eds.), pp. 123-133. Am. Soc. Microbiol., Washington DC.
40. Bowman, J.P., Skerratt, J.H., Nichols, P.D. and Sly, L.I. (1993) Phospholipid fatty acid and lipopolysaccharide fatty acid signature lipids in methane-utilizing bacteria. FEMS Microbiol. Ecol. 85, 15-22.
41. Dowling, N.J.E., Widdel, F. and White, D.C. (1986) Phospholipid ester-linked fatty acid biomarkers of acetate-oxidizing sulphate-reducing bacteria and other sulphide forming bacteria. J. Gen. Microbiol. 132, 1815-1825.
42. Bowman, J.P., Sly, L.I., Nichols, P.D. and Hayward, A.C. (1993) Revised taxonomy of the Methanotrophs: Description of Methylobacter gen. nov., emendation of Methylococcus, validation of Methylosinus and Methylcystis species and a proposal that the family Methylococcaceae includes onlt the group I methanotrophs. Int. J. System. Bacteriol. 43 (4), 735-733.
43. Nichols, P.D and White, D.C. (1989) Accumulation of poly-β-hydroxybutyrate in a methane-enriched halogenated hydrocarbon-degrading soil column: implications for microbial community structure and nutritional status. Hydrobiologia 176, 369-377.
44. Rajendran, N., Matsuda, O., Imamura, N. and Urushigawa, Y. (1992) Variation in microbial biomass and community structure in sediments of eutrophic bays as determined by phospholipid ester-linked fatty acids. Appl. Environ. Microbiol. 58 (2), 562-571.
45. Guckert, J.B., Hood, M.A. and White, D.C. (1986) Phospholipid ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: Increases in the trans/cis ration and proportions of cyclopropyl fatty acids. Appl. Environ. Microbiol. 52, 4, 794-801.
46. Chapman, D., Owens, N.F. and Walker, D.A. (1966) Physical studies of phospholipids.II. Monolayer studies of some synthetic 2,3-diacyl-DL-phosphatidylethanolamines and phosphatidycholines containing trans double bonds. Biochim. Biophys. Acta 120, 148-155.
47. Zobell, C.E. and Morita, R.Y. (1957) Barophilic bacteria from deep-sea environments. J. Bacteriol. 73, 563-568.
48. Boon, J.J., De Leeuw, J.W., Van Der Hoek, G.J. and Vosjan, J.H. (1977) Significance and taxonomic value of iso and anteiso monoenoic fatty acids and branched β hydroxy fatty acids in Desulfovibrio desulfuricans. J. Bacteriol. 129, 1183-1191.
49. Edlund, A., Nichols, P.D., Roffey, R. and White, D.C. (1985) Extractable and lipopolysaccharide fatty acid and hydroxy acid profiles from Desulfovibrio species. J. Lipid. Res. 26, 982-988.
50. Parkes, R.J. and Taylor, J. (1983) The relationship between fatty acid distributions and bacterial respiratory types in contemporary marine sediments. East Coast and Shelf Sci. 16, 173-189.
51. Elsgaard, L., Guezennec, J.G., Benbouzid-Rollet, N. and Prieur, D. (1991) Fatty acid composition of sulfate-reducing bacteria from deep-sea hydrothermal vents (13°N, East Pacific Rise) Kieler Meeresforsch. 8, 182-187.
52. Elsgaard L., Guezennec, J.G., Benbouzid-Rollet, N. and Prieur, D. (1995) Mesophilic sulfate reducing bacteria from three deep-sea hydrothermal vent sites. Oceanologica Acta 18, 95-104.
53. Vainshtein, M., Hippe, H. and Kroppenstedt, R.M. (1992) Cellular fatty acids of Desulfovibrio species and its use in classification of sulfate-reducing bacteria. System. Appl. Microbiol. 15, 554-556.
54. Kroppenstedt, R.M. and Kutzner, H.J. (1978) Biochemical taxonomy of some problem actinomycetes. Zblt. Bakt. I. Abt. Suppl.6, 125-133.
55. Ringelberg, D.B., Davis, J.D Smith, G.A., Pffiner, S.M., Nichols, P.D., Nickels, J.S., Henson, J.M., Wilson, J.T., Yates, M., Kampbell, D.H., Read, H.W., Stocksdale, T.T. and White, D.C. (1989) Validation of signature polar lipid fatty acid biomarkers for alkane-utilizing bacteria in soils and subsurface aquifer materials. FEMS Microbiol. Ecol. 62, 39-50.
56. Novelli, G.D. and Zobell, C.E. (1944) Assimilation of petroleum hydrocarbons by sulfate-reducing bacteria. J. Bacteriol. 7, 447-448.
57. Atlas, R.M. and Bartha, R. (1973) Inhibition by fatty acids of the biodegradation of petroleum. Antonie van Leuwenhoek 39, 257-271.
58. 2 by a new type of sulfate-reducing bacteria. Arch. Mikrobiol. 156, 5-14.
59. Rozanova, E.P. and Nazina, T.N. (1982) Hydrocarbon degrading bacteria and their activity in oil pools. Microbiology 51, 287-293.
60. Skerrat, J.H., Nichols, P.D., Bowman, J.P. and Sly, L.I. (1992) Occurrence and siginficance of long chain (ω-1)-hydroxy fatty acids in methane-utilizing bacteria. Org. Goechem. 2, 189-194.
61. Kerger, R.H., Nichols, P.D., Sand, W., Bock, E. and White, D.C. (1987) Association of acid producing Thiobacilli with degradation of concrete:analysis by 'signature'fatty acids from the polar lipids and lipopolysaccharide. J. Indust. Microbiol. 2, 63-69.
62. Langworthy, T.A., Tornabene, T.G. and Holzer, G. (1982) Lipids of archaebacteria. Zentrabl. Bakteriol. Mikrobiol. Hyg. C 3, 228-244.