Random amplified polymorphic DNA (RAPD) and parsimony methods

Cladistics

Volumn 11, Issue 2, 1995, Pages 119-130

  Backeljau, Thierry ^a   De Bruyn, Luc ^b   De Wolf, Hans ^b   Jordaens, Kurt ^b   Van Dongen, Stefan ^b   Verhagen, Ron ^b   Winnepenninckx, Birgitta ^b  

^a ROYAL BELGIAN INSTITUTE OF NATURAL SCIENCES   (Belgium)

^b UNIVERSITY OF ANTWERP   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

PARSIMONY ANALYSIS; RANDOM AMPLIFIED POLYMORPHIC DNA;

EID: 0029431954     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1016/0748-3007(95)90009-8     Document Type: Article

References (69)

1. Mitochondrial DNA products among RAPD profiles are frequent and strongly differentiated between races of Douglas-fir
2. Use of random amplified polymorphic DNA (RAPD) markers to assess relationships among beach clams of the genus Donax
3. Character-state weighting for restriction site data in phylogenetic reconstruction, with an example from chloroplast DNA
4. Genetic variability and evolution of the Schistosoma genome analysed by using random amplified polymorphic DNA markers
5. Characterization and Phylogenetic Analysis of Four Root-Knot Nematode Species Using DNA Amplification Fingerprinting and Automated Polyacrylamide Gel Electrophoresis
6. Arbitrarily primed DNA fingerprinting for phylogenetic reconstruction in vertebrates: The Xiphophorus model
7. Use of randomly amplified polymorphic DNA markers in comparative genome studies
8. Segregation analysis of random amplified polymorphic DNA (RAPD) markers in Picea abies Karst
9. The Application of Electrophoretic Data in Systematic Studies
10. MAAP: a versatile and universal tool for genome analysis
11. DNA amplification finger-printing using very short arbitrary oligonucleotide primers
12. DNA amplification fingerprinting: A strategy for genome analysis
13. Genome relationships among Lotus species based on random amplified polymorphic DNA (RAPD)
14. Phylogenetic relationships among paper wasp social parasites and their hosts (Hymenoptera: Vespidae; Polistinae)
15. Genetic polymorphism between and within Meloidogyne species detected with RAPD markers
16. Prospects for estimating nucleotide divergence with RAPDs
17. Species diagnosis and phylogeny of the Ips grandicollis group (Coleoptera: Scolytidae) using random amplified polymorphic DNA
18. Cladistic Analysis of Restriction Endonuclease Cleavage Maps Within a Maximum-Likelihood Framework
19. Allozyme cladistics in malacology: why and how?
20. THE RETENTION INDEX AND THE RESCALED CONSISTENCY INDEX
21. Genetic analysis of populations of threatened snake species using RAPD markers
22. Patterns of nucleotide substitution in pseudogenes and functional genes
23. Genetic characterization of Toxoplasma gondii strains by random amplified polymorphic DNA polymerase chain reaction
24. Comparison of gel matrices for resolving PCR-amplified DNA fingerprint profiles
25. Applications of random amplified polymorphic DNA (RAPD) in molecular ecology
26. Systematics and randomly amplified polymorphic DNA in the genus Leucaena (Leguminosae, Mimosoideae)
27. Random amplified polymorphic DNAs and microsatellites: what are they, and can they tell us anything we don't already know?
28. Arbitrary (RAPD) primer sequences used in insect studies
29. Phylogenetic analysis of restriction site data
30. Computing genetic similarity coefficients from RAPD data: the effects of PCR artifacts
31. Computing genetic similarity coefficients from RAPD data: correcting for the effects of PCR artifacts caused by variation in experimental conditions
32. Random amplified polymorphic DNA markers for DNA fingerprinting and genetic variability assessment of minute parasitic wasp species (Hymenoptera: Mymaridae and Trichogrammatidae) used in biological control programs of phytophagous insects
33. DNA fragments of organellar origin in random amplified polymorphic DNA (RAPD) patterns of sugar beet (Beta vulgaris L.)
34. Analysis of population genetic structure with RAPD markers
35. Coding polymorphic data: examples from allozymes and ontogeny
36. RAPD markers in maize genetic analysis
37. DNA fingerprinting by arbitrarily primed PCR
38. On the inappropriateness of presence/absence recoding for non-additive multistate characters in computerized cladistic analyses
39. Congruence Between Morphological and Allozyme Data in Evolutionary Inference and Character Evolution
40. Treating polymorphic characters in systematics: a phylogenetic treatment of electrophoretic data
41. Evolutionary patterns in allozyme data: a systematic approach
42. The phylogenetic analysis of allozyme data: invalidity of coding alleles by presence/absence and recommended procedures
43. Excess of non-parental bands in off-spring from known primate pedigrees assayed using RAPD PCR
44. Homology among RAPD fragments in interspecific comparisons
45. Randomly amplified DNA polymorphisms in dogs are reproducible and display Mendelian transmission
46. Segregating random amplified polymorphic DNAs (RAPDs) in Betula alleghaniensis
47. The use of RAPD markers for molecular phylogenies
48. Characterization of random amplified polymorphic DNA (RAPD) products from Xanthomonas campestris and some comments on the use of RAPD products in phylogenetic analysis
49. Genetics, plants, and the polymerase chain reaction
50. RAPD profiling in biological conservation: An application to estimating clonal variation in rare and endangered Iliamna in Virginia
51. Phylogeny reconstruction
52. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
53. DNA evolution and colonization sequence of island lizards in relation to geological history: mtDNA RFLP, cytochrome b, cytochrome oxidase, 12S rRNA sequence, and nuclear RAPD analysis
54. Analysis of genetic variation in isolates of Trichinella using random amplified polymorphic DNA
55. Evaluating the relationship of autumn buttercup (Ranunculus acriformis var. aestivalis) to some close congeners using random amplified polymorphic DNA
56. Limitations of the RAPD technique in phylogeny reconstruction in Drosophila
57. Fingerprinting genomes using PCR with arbitrary primers
58. Fingerprinting using arbitrarily primed PCR: application to genetic mapping, population biology, epidemiology, and detection of differentially expressed RNAs
59. Genomic fingerprinting by arbitrarily primed polymerase chain reaction resolves Borrelia burgdorferi into three distinct phyletic groups
60. Random amplified polymorphic DNA (RAPD) markers readily distinguish cryptic mosquito species (Diptera: Culicidae: Anopheles)
61. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers