Fiber-Optic DNA Sensor for Fluorometric Nucleic Acid Determination

Analytical Chemistry

Volumn 67, Issue 15, 1995, Pages 2635-2643

  Piunno, Paul A E ^a   Krull, Ulrich J ^a   Hudson, Robert H E ^a   Damha, Masad J ^b   Cohen, Huguette ^c  

^a UNIVERSITY OF TORONTO   (Canada)

^b MCGILL UNIVERSITY   (Canada)

^c AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGONUCLEOTIDE;

ARTICLE; CHEMISTRY; FIBER OPTICS; GENETIC PROCEDURES; NUCLEIC ACID HYBRIDIZATION; SPECTROFLUOROMETRY; SYNTHESIS;

BIOSENSING TECHNIQUES; DNA; FIBER OPTICS; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDES; SPECTROMETRY, FLUORESCENCE;

EID: 0029347976     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac00111a022     Document Type: Article

References (62)

1. Hage, D.S. Anal. Chem. 1993, 65, 420R-424R.
2. Braun, T.; Klein, A.; Zsindely, S.; Lyon, W.S. Trends Anal. Chem. 1992, 11, 5-7.
3. Ngo, T.T. Curr. Opin. Biotechnol. 1991, 2, 102-109.
4. Biolin, I.; Lonroth, H.; Svennerholm, A.M. J. Clin. Mircobiol. 1995, 33, 381-384.
5. Rishpon, J. Report of the International Symposium on Sensors for Environmental Microbes, Utah State University, Logan, UT, April 1994; Development of Sensors for Environmental Microbes; National Center for the Design of Molecular Function: Logan, UT, 1994; p 60.
6. Brennan, J.D.; Brown, R.S.; Delia Manna, A.; Kallury, K.M.R.; Piunno, P.A.; Krull, U. J. Sens. Actuators B 1993, 11, 109-119.
7. Veringa, E.M.; Zuyderwijk, M.A.M.; Schellekens, H. J. Microbiol. Methods 1994, 19, 117-125.
8. Woods, G.L.; Witebsky, F.G. Arch. Pathol. Lab. Med. 1993, 117, 876-882.
9. Saini, K.S.; Bhandari, B. Anal. Biochem. 1994, 222, 293-294.
10. Young, F.E. J. Am. Med. Assoc. 1987, 229, 2404-2406.
11. Arnold, L.J.; Hammond, P.W.; Wiese, W.A.; Nelson, N.C. Clin. Chem. 1989, 35, 1588-1594.
12. Reichelderfer, P.S.; Brooks, J. J. PCR Methods Appl. 1994, 4, S141-S149.
13. Miller, N.; Hernandez, S.G.; Clearly, T.J. J. Clin. Microbiol. 1994, 32, 393-397.
14. Rossiter, B.J.F.; Caskey, C.T. In Polymerase Chain Reaction; Mullis, K.B., Ferre, F., Eds.; Birkhaeuser: Boston, 1994; pp 395-405.
15. Wolcott, M. J. Clin. Microbiol. Rev. 1992, 5, 370-386.
16. Symons, R.H. Nucleic Acid Probes; CRC Press: Boca Raton, FL, 1989.
17. Bock, L.C.; Griffin, L.C.; Latham, J.A.; Vermaas, E.H.; Toole, J.J. Nature 1992, 355, 564-566.
18. Tay, F.; Liu, Y.B.; Flynn, M.J.; Slots, J. Oral Microbiol. Immunol. 1992, 7, 344-349.
19. Sherman, M.I.; Bertelsen, A.H.; Cook, A.F. Bioorg. Med. Chem. Lett. 1993, 3, 469-475.
20. Letsinger, R.L.; Lunsford, W.B. J. Am. Chem. Soc. 1976, 98, 3655-3661.
21. Beaucage, S.L.; Caruthers, M.H. Tetrahedron Lett. 1981, 22, 1859-1862.
22. Alvarado-Urbina, G.; Sathe, G.M.; Liu, W.-C.; Gillen, M.F.; Duck, P.D.; Bender, R.; Ogilvie, K.K. Science 1981, 214, 270-274.
23. Bright, F.V.; Betts, T.A.; Litwiler, K.S. Anal. Chem. 1990, 62, 1065-1069.
24. Vo-Dinh, T.; Griffin, G.D.; Sepaniak, M.J. In Fiber Optic Chemical Sensors and Biosensors; Wolfbeis, O.S., Ed.; CRC Press: Boca Raton, FL, 1991; Vol. 2, pp 217-257.
25. Shokat, K.M.; Schultz, P.G. Methods Enzymol. 1993, 203, 327-351.
26. Downs, M.E.A.; Kobayashi, S.; Karube, I. Anal. Lett. 1987, 20, 1897-1927.
27. Andle, J.C.; Vetelino, J.F.; Lade, M.W.; McAllister, D.J. Sens. Actuators B 1992, 8, 191-198.
28. Richards, J.C.; Bach, D.T. Eur. Pat. Appl. EP295965 A2 21, December 1988.
29. Su, H.; Yang, M.; Kallury, K.M.R.; Thompson, M. Analyst 1993, 118, 309-312.
30. Millan, K.M.; Spurmanis, A.J.; Mikkelsen, S.R. Electroanalysis 1992, 4, 929-932.
31. Millan, K.M.; Mikkelsen, S.R. Anal. Chem. 1993, 65, 2317-2323.
32. Millan, K.M.; Saraullo, A.; Mikkelsen, S.R. Anal. Chem. 1994, 66, 2943-2948.
33. Piunno, P.A.E.; Krull, U.J.; Hudson, R.H.E.; Damha, M.J.; Cohen, H. Anal. Chim. Acta 1994, 288, 205-214.
34. Hirscfeld, T.B. U.S. Patent 5, 242, 797, 1993.
35. Vo-Dinh, T.; Houck, K.; Stokes, D.L. Anal. Chem. 1994, 66, 3379-3383.
36. Brennan, J.D.; Brown, R.S.; McClintock, C.D.; Krull, U. J. Anal. Chim. Acta 1990, 253-263.
37. Damha, M.J.; Giannaris, P.A.; Zabarylo, S.V. Nucleic Acids Res. 1990, 18, 3813-3821.
38. Arnold, L.; Tocik, Z.; Bradkova, E.; Hostomsky, Z.; Paces, V.; Smrt, J. Collect. Czech. Chem. Commun. 1989, 54, 523-532.
39. Hudson, R.H.E.; Damha, M.J. J. Am. Chem. Soc. 1993, 115, 2119-2124.
40. Damha, M.J.; Ogilvic, K.K. In Methods in Molecular Biology: Protocols for Oligonucleotide Synthesis; Agrawal, S., Ed.; Humana Press Inc.: Totowa, NJ, 1993; Vol. 20, pp 81-114.
41. Efimov, V.A.; Reverdatta, S.V.; Chakhmakhcheva, O.G. Tetrahedron Lett. 1982, 23, 961-964.
42. Caruthers, M.H. In Synthesis and Applications o/DNA and RNA; Narang, S., Ed.; Academic Press Inc.: Orlando, FL, 1987; pp 47-94.
43. Wolf, S.F.; Haines, L.; Fisch, J.; Kremsky, J.N.; Dougherty, J.P.; Jacobs, K. Nucleic Acids Res. 1987, 15, 2911-2926.
44. Zhang, Y.; Coyne, M.Y.; Will, S.G.; Levenson C.H.; Kawasaki, E.S. Nucleic Acids Res. 1991, 19, 3929-3933.
45. Beaucage, S.L.; Iyer, R.P. Tetrahedron 1992, 48, 2223-2311.
46. Pon, R.T. In Methods in Molecular Biology: Protocols for Oligonucleotides and Analogs; Agrawal, S., Ed.; Humana Press Inc.: Totowa, NJ, 1993; pp 465-496.
47. Tener, G.M. J. Am. Chem. Soc. 1961, 89, 159-168.
48. Lakowicz, J.R. Principles of Fluorescence Spectroscopy, Plenum Press: New York, 1983.
49. Waring, M. J. Biochim. Biophys. Acta 1966, 114, 234-244.
50. LePecq, J.B.; Paoletti, C. J. Mol. Biol. 1967, 27, 87-106.
51. Watkins, T.I. J. Chem. Soc. 1952, 3059-3064.
52. Monaco, R.R.; Hausheer, F.H. J. Biomol. Struct. Dyn. 1993, 10, 675-680.
53. Bauer, G.J.; McCaskill, J.S.; Otten, H. Proc. Natl. Acad. Sci. U.S.A. 1989, 56, 7937-7941.
54. Cuniberti, C.; Guenza, M. Biophys. Chem. 1990, 38, 11-22.
55. Haugland, R.P. Molecular Probes: Handbook of Fluorescent Probes and Research Chemicals, 5th ed.; Molecular Probes Inc.: Eugene, OR, 1992.
56. Ducharme, D.; Max, J.J.; Salsee, C.; LeBlanc, R.M. J. Phys. Chem. 1990, 94, 1925-1932.
57. Ohanian, H.C.; Physics, W.W. Norton & Co.: New York, 1985; p 835.
58. Krull, U.J.; Brown, R.S.; Vandenberg, E.T. In Fiber Optic Chemical Sensors and Biosensors; Wolfbeis, O.S., Ed.; CRC Press: Boca Raton, FL, 1991; Vol. II, pp 315-340.
59. Love, W.F.; Button, L.J.; Slovacek, R.E. In Biosensors with Fiberoptics; Wise, D.L., Wingard, L.B., Eds.; Humana: Totawa, NJ, 1991; pp 139-180.
60. Nelson, J.W.; Martin, F.H.; Tinoco, I., Jr. Biopolymers 1981, 20, 2509-2531.
61. Kibler-Herzog, L.; Zon, G.; Whittier, G.; Mizan, S.; Wilson, W.D. Anti-Cancer DrugDes. 1993, 8, 65-79.
62. Puglisi, J.D.; Tinoco, I., Jr. Methods Enzymol. 1989, 180, 304-325.