Purification, cloning, and properties of the tRNA Ψ55 synthase from Escherichia coli

RNA

Volumn 1, Issue 1, 1995, Pages 102-112

  Nurse, Kelvin ^a   Wrzesinski, Jan ^a   Bakin, Andrey ^a   Lane, Byron G ^b   Ofengand, James ^a  

^a HOFFMANN LA ROCHE INC   (United States)

^b UNIVERSITY OF TORONTO   (Canada)

Author keywords

(His)6 leader; Bacillus subtilis gene; Chemical sequencing; Modified base; Pseudouridine; T CG

Indexed keywords

HISTIDINE; ISOMERASE; PEPTIDE; PHENYLALANINE TRANSFER RNA; POLYHISTIDINE; PSEUDOURIDINE; RECOMBINANT PROTEIN; TRANSFER RNA; TRNA PSEUDOURIDINE 55 SYNTHASE; VALINE TRANSFER RNA;

AFFINITY CHROMATOGRAPHY; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; BIOSYNTHESIS; COMPARATIVE STUDY; DNA SEQUENCE; ENZYME SPECIFICITY; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; RNA PROCESSING; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMATOGRAPHY, AFFINITY; CLONING, MOLECULAR; ESCHERICHIA COLI; GENES, BACTERIAL; HISTIDINE; INTRAMOLECULAR LYASES; ISOMERASES; MOLECULAR SEQUENCE DATA; PEPTIDES; PSEUDOURIDINE; RECOMBINANT PROTEINS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, TRANSFER; RNA, TRANSFER, PHE; RNA, TRANSFER, VAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

EID: 0029258983     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (36)

1. Arps PJ, Marvel CC, Rubin BC, Tolan DA, Penhoet EE, Winkler ME. 1985. Structural features of the hisT operon of Escherichia coli K-12. Nucleic Acids Res 13:5297-5315.
2. Bakin A, Ofengand J. 1993. Four newly located pseudouridylate residues in Escherichia coli 235 ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique. Biochemistry 32:9754-9762.
3. Chang GW, Roth JR, Ames BN. 1971. Histidine regulation in Salmonella typhimurium. VIII. Mutations of the hisT gene. J Bacteriol 108:410-414.
4. Chen GFT, Inouye M. 1994. Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli. Genes & Dev 8:2641-2652.
5. Tyr precursor. FEBS Lett 77:75-82.
6. Cohn WE. 1959. 5-Ribosyl uracil, a carbon-carbon ribofuranosyl nucleoside in ribonucleic acids. Biochim Biophys Acta 32:569-571.
7. Cohn WE. 1960. Pseudouridine, a carbon-carbon linked ribonucleoside in ribonucleic acids: Isolation, structure, and chemical characteristics. J Biol Chem 235:1488-1498.
8. Cortese R, Kammen HO, Spengler SJ, Ames BN. 1974. Biosynthesis of pseudouridine in transfer ribonucleic acid. J Biol Chem 249:1103-1108.
9. Davis FF, Allen FW. 1957. Ribonucleic acids from yeast which contain a fifth nucleotide. J Biol Chem 227:907-915.
10. Denman R, Weitzmann C, Cunningham PR, Negre D, Nurse K, Colgan J, Pan YC, Miedel M, Ofengand J. 1989. In vitro assembly of 30S and 70S bacterial ribosomes from 16S RNA containing single base substitutions, insertions, and deletions around the decoding site (C1400). Biochemistry 28:1002-1011.
11. Devereux J, Haeberli P, Smithies O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387-395.
12. Fox JJ, Shugar D. 1952. Spectrophotometric studies of nucleic acid derivatives and related compounds as a function of pH. Biochim Biophys Acta 9:369-384.
13. Goldwasser E, Heinrikson RL. 1966. The biochemistry of pseudouridine. In: Davidson NJ, Cohn WE, eds. Progress in nucleic acid research and molecular biology. New York: Academic Press, pp 399-416.
14. Green CJ, Kammen HO, Penhoet EE. 1982. Purification and properties of a mammalian tRNA pseudouridine. J Biol Chem 257:3045-3052.
15. Johnson L, Söll D. 1970, In vitro biosynthesis of pseudouridine at the polynucleotide level by an enzyme extract from Escherichia coli. Proc Natl Acad Sci USA 67:943-950.
16. Johnston HM, Barnes WM, Chumley FG, Bossi L, Roth J. 1980. Model for regulation of the histidine operon of Salmonella. Proc Natl Acad Sci USA 77:508-512.
17. Kammen HO, Marvel CC, Hardy L, Penhoet EE. 1988. Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I. J Biol Chem 263:2255-2263.
18. Krzyzosiak WJ, Denman R, Cunningham PR, Ofengand J. 1988. An efficiently mutagenizable recombinant plasmid for in vitro transcription of the Escherichia coli 165 RNA gene. Anal Biochem 175:373-385.
19. Lankat-Buttgereit B, Gross HJ, Krupp G. 1987. Detection of modified nucleosides by rapid RNA sequencing methods. Nucleic Acids Res 15:7649.
20. Matsudaira P. 1987. Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membranes. J Biol Chem 262:10035-10038.
21. Ofengand J, Schaefer H. 1965. On the ionization constant of 5-ribosyluracil. Biochemistry 4:2832-2835.
22. Patton JR. 1994. Formation of pseudouridine in U5 small nuclear RNA. Biochemistry 33:10423-10427.
23. Patton JR, Jacobson MR, Pederson T. 1994. Pseudouridine formation in U2 small nuclear RNA. Proc Natl Acad Sci USA 91:3324-3328.
24. Peattie DA. 1979. Direct chemical method for sequencing RNA. Proc Natl Acad Sci USA 76:1760-1764.
25. Samuelsson T, Olsson M. 1990. Transfer RNA pseudouridine synthases in Saccharomyces cerevisiae. J Biol Chem 265:8782-8787.
26. Sands JF, Regnier P, Cummings HS, Grunberg-Manago M, Hershey JWB. 1988. The existence of two genes between infB and rpsO in the Escherichia coli genome: DNA sequencing and S1 nuclease mapping. Nucleic Acids Res 16:10803-10816.
27. Scannell JP, Crestfield AM, Allen FW. 1959. Methylation studies on various uracil derivatives and on an isomer of uridine isolated from ribonucleic acids. Biochim Biophys Acta 32:406-412.
28. Tyr of Escherichia coli. Proc Natl Acad Sci USA 70:3626-3630.
29. His ineffective in repression and lacking two pseudouridine modifications. Nature New Biol 238:72-74.
30. Studier FW, Rosenberg AH, Dunn JJ, Dubendorff JW. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol 185:60-89.
31. IIe. EMBO J 13:4636-4644.
32. Tsui HT, Arps PJ, Connolly DM, Winkler ME. 1991. Absence of hisT-mediated tRNA pseudouridylation results in a uracil requirement that interferes with Escherichia coli K-12 cell division. J Bacteriol 173:7395-7400.
33. Weitzmann CJ, Cunningham PR, Nurse K, Ofengand J. 1993. Chemical evidence for domain assembly of the Escherichia coli 30S ribosome. FASEB J 7:177-180.
34. Weitzmann CJ, Cunningham PR, Ofengand J. 1990. Cloning, in vitro transcription, and biological activity of Escherichia coli 23S ribosomal RNA. Nucleic Acids Res 18:3515-3520.
35. Yu CT, Allen FW. 1959. Studies on an isomer of uridine isolated from ribonucleic acids. Biochim Biophys Acta 32:393-405.
36. Zamir A, Holley RW, Marquisee M. 1965. Evidence for the occurrence of a common pentanucleotide sequence in the structures of transfer ribonucleic acids. J Biol Chem 240:1267-1273.