-
1
-
-
0024529568
-
General properties of DNA in regions of interaction with proteins
-
Abagyan, R.A., and Ulyanov, A.V. 1989. General properties of DNA in regions of interaction with proteins. Proc. Acad. Sci. USSR 304, 741-745 (in Russian).
-
(1989)
Proc. Acad. Sci. USSR
, vol.304
, pp. 741-745
-
-
Abagyan, R.A.1
Ulyanov, A.V.2
-
2
-
-
85010085929
-
-
Abremsky, K., Sirotkin, K., and Lapedes, A. 1991. Application of neural networks and information theory to the identification of E. coli transcriptional promoters, in Abstr. 8th Int. Conf. on Mathematical and Computer Modelling.
-
(1991)
Application of neural networks and information theory to the identification of E. coli transcriptional promoters, in Abstr. 8th Int. Conf. on Mathematical and Computer Modelling.
-
-
Abremsky, K.1
Sirotkin, K.2
Lapedes, A.3
-
3
-
-
0027216663
-
3,400 new expressed sequence tags identify diversity of transcripts in human brain
-
Adams, M.D., Kerlavage, A.R., Fields, C., and Venter, J.C. 1993. 3,400 new expressed sequence tags identify diversity of transcripts in human brain. Nature Genet. 4, 256-267.
-
(1993)
Nature Genet.
, vol.4
, pp. 256-267
-
-
Adams, M.D.1
Kerlavage, A.R.2
Fields, C.3
Venter, J.C.4
-
4
-
-
85010148668
-
Prediction of functional signals
-
Kalambet Y.A., In Frank-Kamenet-sky, M.D. ed., Nauka, Moscow, (in Russian).
-
Alexandrov, N.N., and Kalambet, Y.A. 1990. Prediction of functional signals, 113-153. In Frank-Kamenet-sky, M.D. ed., Computer Analysis of Genetic Texts. Nauka, Moscow, (in Russian).
-
(1990)
Computer Analysis of Genetic Texts
, pp. 113-153
-
-
Alexandrov, N.N.1
Kalambet, Y.A.2
-
5
-
-
0023085096
-
Recognition of the functional sites in DNA sequence: Escherichia coli promotors
-
(in Russian).
-
Alexandrov, N.N., and Mironov, A.A. 1987. Recognition of the functional sites in DNA sequence: Escherichia coli promotors. Molekulamaya Biologiya 21, 242-249 (in Russian).
-
(1987)
Molekulamaya Biologiya
, vol.21
, pp. 242-249
-
-
Alexandrov, N.N.1
Mironov, A.A.2
-
6
-
-
85010119043
-
Pattern recognition in computer analysis of nucleotide sequences
-
Alexandrov, N.N., and Mironov, A.A. 1989. Pattern recognition in computer analysis of nucleotide sequences. MoL Biol. 23, 988-999.
-
(1989)
MoL Biol.
, vol.23
, pp. 988-999
-
-
Alexandrov, N.N.1
Mironov, A.A.2
-
7
-
-
0025275564
-
Application of a new method of pattern recognition
-
Alexandrov, N.N., and Mironov, A. A. 1990. Application of a new method of pattern recognition. Nucleic Acids Res. 18, 1847-1852.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 1847-1852
-
-
Alexandrov, N.N.1
Mironov, A.A.2
-
8
-
-
0022342640
-
Nucleotide distribution and the recognition of coding regions in DNA sequences: An Information Theory approach
-
Almagor, H. 1985. Nucleotide distribution and the recognition of coding regions in DNA sequences: An Information Theory approach. J. Theor. Biol. 117, 127-136.
-
(1985)
J. Theor. Biol.
, vol.117
, pp. 127-136
-
-
Almagor, H.1
-
10
-
-
0023045697
-
A statistical method for correlating tRNA sequence with amino acid specificity
-
Atilgan, T., Nicholas, H.B. Jr, and McClain, W.H. 1986. A statistical method for correlating tRNA sequence with amino acid specificity. Nucleic Acids Res. 14, 375-380.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 375-380
-
-
Atilgan, T.1
Nicholas, H.B.2
McClain, W.H.3
-
11
-
-
0028303468
-
Quantitative analysis of ribosome binding sites in E
-
Barrick, D., Villanueba, K., Childs, J., Kalil, R., Schneider, T.D., Lawrence, C.E., Gold, L., and Stormo, G.D. 1994. Quantitative analysis of ribosome binding sites in E. coli. Nucleic Acids Res. 22, 1287-1295.
-
(1994)
coli. Nucleic Acids Res.
, vol.22
, pp. 1287-1295
-
-
Barrick, D.1
Villanueba, K.2
Childs, J.3
Kalil, R.4
Schneider, T.D.5
Lawrence, C.E.6
Gold, L.7
Stormo, G.D.8
-
12
-
-
0020024572
-
Codon selection in yeast
-
Bennetzen, J.L., and Hall, B.D. 1982. Codon selection in yeast. J. Biol Chem. 257, 3026-3031.
-
(1982)
J. Biol Chem.
, vol.257
, pp. 3026-3031
-
-
Bennetzen, J.L.1
Hall, B.D.2
-
13
-
-
0024805395
-
The isochore organization of the human genome
-
Bernardi, G. 1989. The isochore organization of the human genome. Annu. Rev. Genet. 23, 637-661.
-
(1989)
Annu. Rev. Genet.
, vol.23
, pp. 637-661
-
-
Bernardi, G.1
-
14
-
-
0027395841
-
The vertebrate genome: Isochores and evolution
-
Bernardi, G. 1993. The vertebrate genome: Isochores and evolution. Mol. Biol. Evol. 10, 186-204.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 186-204
-
-
Bernardi, G.1
-
15
-
-
0022292284
-
Codon usage and genome composition
-
Bernardi, G., and Bernardi, G. 1985. Codon usage and genome composition. J. MoL Evol. 22, 363-365.
-
(1985)
J. MoL Evol.
, vol.22
, pp. 363-365
-
-
Bernardi, G.1
Bernardi, G.2
-
16
-
-
0025104361
-
Compositional patterns in the nuclear genomes of cold-blooded vertebrates
-
Bernardi, G., and Bernardi, G. 1990. Compositional patterns in the nuclear genomes of cold-blooded vertebrates. J. Mol. Evol. 31, 265-281.
-
(1990)
J. Mol. Evol.
, vol.31
, pp. 265-281
-
-
Bernardi, G.1
Bernardi, G.2
-
18
-
-
0023948822
-
Selection of DNA binding sites by regulatory proteins: The LexA protein and the arginine repressor use different strategies for functional specificity
-
Berg, O.G. 1988b. Selection of DNA binding sites by regulatory proteins: The LexA protein and the arginine repressor use different strategies for functional specificity. Nucleic Acids Res. 16, 5089-5105.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 5089-5105
-
-
Berg, O.G.1
-
19
-
-
0023147228
-
Selection of DNA binding sites by regulatory proteins. I. Statistical-mechanical theory and application to operators and promoters
-
Berg, O.G., and von Hippel, P.H. 1987. Selection of DNA binding sites by regulatory proteins. I. Statistical-mechanical theory and application to operators and promoters. J. MoL Biol. 193, 723-750.
-
(1987)
J. MoL Biol.
, vol.193
, pp. 723-750
-
-
Berg, O.G.1
von Hippel, P.H.2
-
20
-
-
0023894726
-
Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor to recognition sites
-
Berg, O.G., and von Hippel, P.H. 1988a. Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor to recognition sites. J. MoL Biol. 200, 709-723.
-
(1988)
J. MoL Biol.
, vol.200
, pp. 709-723
-
-
Berg, O.G.1
von Hippel, P.H.2
-
21
-
-
0023947427
-
Selection of DNA binding sites by regulatory proteins
-
Correction
-
Berg, O.G., and von Hippel, P.H. 1988b, Selection of DNA binding sites by regulatory proteins. Trends Biochem. Sci. 13, 207-211; Correction, p. 301.
-
(1988)
Trends Biochem. Sci.
, vol.13
, pp. 207-211
-
-
Berg, O.G.1
von Hippel, P.H.2
-
22
-
-
0021710537
-
The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences
-
Bibb, M.J., Findlay, P.R., and Johnston, M.W. 1984. The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences. Gene 30, 157-166.
-
(1984)
Gene
, vol.30
, pp. 157-166
-
-
Bibb, M.J.1
Findlay, P.R.2
Johnston, M.W.3
-
23
-
-
0027519504
-
Analysis of the E. coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes
-
Blattner, F.D., Burland, V., Plunkett, G. III, Sofia, H.J., and Daniels, D.L. 1993. Analysis of the E. coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Nucleic Acids Res. 21, 5408-5417.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5408-5417
-
-
Blattner, F.D.1
Burland, V.2
Plunkett, G.3
Sofia, H.J.4
Daniels, D.L.5
-
24
-
-
85010107775
-
-
In Kolchanov, N.A., Ratner, V.A. eds., Abstr. Int. Conf. “Modelling and Computer Methods in Molecular Biology and Genetics,” Novosibirsk.
-
Bondarenko, K.V., Vlaskin, N.V., Nizolenko, L.P., Gusev, V.D., and Kulichkov, V.A. 1990. Searching for genetical signals by modified method, 47-48. In Kolchanov, N.A., Ratner, V.A. eds., Abstr. Int. Conf. “Modelling and Computer Methods in Molecular Biology and Genetics,” Novosibirsk.
-
(1990)
Searching for genetical signals by modified method
, pp. 47-48
-
-
Bondarenko, K.V.1
Vlaskin, N.V.2
Nizolenko, L.P.3
Gusev, V.D.4
Kulichkov, V.A.5
-
25
-
-
0004192613
-
-
Hayden Book Co., Spartan Books, Rochelle Park, NJ.
-
Bongard, M. 1970. Pattern Recognition. Hayden Book Co., Spartan Books, Rochelle Park, NJ.
-
(1970)
Pattern Recognition.
-
-
Bongard, M.1
-
26
-
-
0027125735
-
-
Bork, P., Ouzounis, C., Sander, C., Scharf, M., Schneider, R., and Sonnhammer, E. 1992a. What's in a genome? Nature 358, 287.
-
(1992)
What's in a genome? Nature
, vol.358
, pp. 287
-
-
Bork, P.1
Ouzounis, C.2
Sander, C.3
Scharf, M.4
Schneider, R.5
Sonnhammer, E.6
-
27
-
-
0027057935
-
Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III
-
Bork, P., Ouzounis, C., Sander, C., Scharf, M., Schneider, R., and Sonnhammer, E. 1992b. Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III. Protein Sci. 1,1677-1690.
-
(1992)
Protein Sci.
, vol.1
, pp. 1677-1690
-
-
Bork, P.1
Ouzounis, C.2
Sander, C.3
Scharf, M.4
Schneider, R.5
Sonnhammer, E.6
-
28
-
-
85010089231
-
-
In Frank-Kamenetsky, M.D., ed., Computer Analysis of Genetic Texts. Nauka, Moscow, (in Russian).
-
Borodovsky, M.Y. 1990. Prediction of coding regions in nucleotide sequences, 81-112. In Frank-Kamenetsky, M.D., ed., Computer Analysis of Genetic Texts. Nauka, Moscow, (in Russian).
-
(1990)
Prediction of coding regions in nucleotide sequences
, pp. 81-112
-
-
Borodovsky, M.Y.1
-
29
-
-
85010145868
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J. eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Borodovsky, M., and Mclninch, J. 1993a. Prediction of gene locations using DNA Markov chain model, 232-248. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J. eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1992)
Prediction of gene locations using DNA Markov chain model
, pp. 232-248
-
-
Borodovsky, M.1
Mclninch, J.2
-
30
-
-
0027208707
-
Recognition of genes in DNA sequences with ambiguities
-
Borodovsky, M., and Mclninch, J. 1993b. Recognition of genes in DNA sequences with ambiguities. BioSystems 30, 161-171.
-
(1993)
BioSystems
, vol.30
, pp. 161-171
-
-
Borodovsky, M.1
Mclninch, J.2
-
31
-
-
0000241874
-
GENMARK: Parallel gene recognition for both DNA strands
-
Borodovsky, M., and Mclninch, J. 1993c. GENMARK: Parallel gene recognition for both DNA strands. Computers Chem. 17, 123-133.
-
(1993)
Computers Chem.
, vol.17
, pp. 123-133
-
-
Borodovsky, M.1
Mclninch, J.2
-
32
-
-
0028503078
-
Deriving non-homogeneous DNA Markov chain models by cluster analysis algorithm minimizing multiple alignment entropy
-
Borodovsky, M., and Peresetsky, A. 1994. Deriving non-homogeneous DNA Markov chain models by cluster analysis algorithm minimizing multiple alignment entropy. Computers Chem, 18, 269-285.
-
(1994)
Computers Chem
, vol.18
, pp. 269-285
-
-
Borodovsky, M.1
Peresetsky, A.2
-
33
-
-
0001695936
-
Statistical features in the Escherichia coli genome functional domains primary structure. III. Computer recognition of protein coding regions
-
Borodovsky, M.Y., Sprizhitsky, Y.A., Golovanov, E.I., and Alexandrov, A.A. 1986. Statistical features in the Escherichia coli genome functional domains primary structure. III. Computer recognition of protein coding regions. Mol. Biol. 20, 1144-1150.
-
(1986)
Mol. Biol.
, vol.20
, pp. 1144-1150
-
-
Borodovsky, M.Y.1
Sprizhitsky, Y.A.2
Golovanov, E.I.3
Alexandrov, A.A.4
-
34
-
-
85010122543
-
Context-connected shift pattern of the frequencies of synonimous codons in Escherichia coli
-
Borodovsky, M.Y., Shepelev, V.A., and Alexandrov, A.A. 1988. Context-connected shift pattern of the frequencies of synonimous codons in Escherichia coli. Mol. Biol. 22, 614-626.
-
(1988)
Mol. Biol.
, vol.22
, pp. 614-626
-
-
Borodovsky, M.Y.1
Shepelev, V.A.2
Alexandrov, A.A.3
-
35
-
-
0027940025
-
New genes in old sequence: Strategy for finding genes in the bacterial genome
-
Borodovsky, M., Koonin, E.V., and Rudd, K.E. 1994. New genes in old sequence: Strategy for finding genes in the bacterial genome. Trends Biochem. Sci. 19, 309-313.
-
(1994)
Trends Biochem. Sci.
, vol.19
, pp. 309-313
-
-
Borodovsky, M.1
Koonin, E.V.2
Rudd, K.E.3
-
36
-
-
0029056051
-
Detection of new genes in the bacterial genome using Markov models for three gene clusters
-
Borodovsky, M., Mclninch, J., Koonin, E.V., Rudd, K.E., Medigue, C., and Danchin, A. 1995. Detection of new genes in the bacterial genome using Markov models for three gene clusters. Nucleic Acids Res. (submitted).
-
(1995)
Nucleic Acids Res. (submitted).
-
-
Borodovsky, M.1
Mclninch, J.2
Koonin, E.V.3
Rudd, K.E.4
Medigue, C.5
Danchin, A.6
-
37
-
-
0021927936
-
Mapping of transcription terminators of bacteriophages and G4 by sequence analysis
-
Brendel, V. 1985. Mapping of transcription terminators of bacteriophages and G4 by sequence analysis. J. Virol. 53, 340-342.
-
(1985)
J. Virol.
, vol.53
, pp. 340-342
-
-
Brendel, V.1
-
38
-
-
0021770582
-
A computer algorithm for testing potential prokaryotic terminators
-
Brendel, V., and Trifonov, E.N. 1984. A computer algorithm for testing potential prokaryotic terminators. Nucleic Acids Res. 12, 4411-4429.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 4411-4429
-
-
Brendel, V.1
Trifonov, E.N.2
-
39
-
-
0022613406
-
Terminators of transcription with RNA polymerase from Escherichia coli: What do they look like and how to find them
-
Brendel, V., Hamm, G.H., and Trifonov, E.N. 1986. Terminators of transcription with RNA polymerase from Escherichia coli: What do they look like and how to find them. J. BiomoL Struct. Dynam. 3, 705-723.
-
(1986)
J. BiomoL Struct. Dynam.
, vol.3
, pp. 705-723
-
-
Brendel, V.1
Hamm, G.H.2
Trifonov, E.N.3
-
40
-
-
0027217835
-
The translational termination signal database
-
Brown, C.M., Dalphin, M.E., Stockwell, P.A., and Tate, W.P. 1993. The translational termination signal database. Nucleic Acids Res. 21, 3119-3123.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3119-3123
-
-
Brown, C.M.1
Dalphin, M.E.2
Stockwell, P.A.3
Tate, W.P.4
-
41
-
-
0025189802
-
Cleaning up gene databases
-
Brunak, S., Engelbrecht, J., and Knudsen, S. 1990a. Cleaning up gene databases. Nature 343, 123.
-
(1990)
Nature
, vol.343
, pp. 123
-
-
Brunak, S.1
Engelbrecht, J.2
Knudsen, S.3
-
42
-
-
0025078736
-
Neural network detects errors in the assignment of mRNA splice sites
-
Brunak, S., Engelbrecht, J., and Knudsen, S. 1990b. Neural network detects errors in the assignment of mRNA splice sites. Nucleic Acids Res. 18, 4797-4801.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 4797-4801
-
-
Brunak, S.1
Engelbrecht, J.2
Knudsen, S.3
-
43
-
-
0025744474
-
Prediction of human donor and acceptor sites from the DNA sequence
-
Brunak, S., Engelbrecht, J., and Knudsen, S. 1991. Prediction of human donor and acceptor sites from the DNA sequence. J. Mol. Biol. 220, 49-66.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 49-66
-
-
Brunak, S.1
Engelbrecht, J.2
Knudsen, S.3
-
44
-
-
0025278259
-
Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences
-
Bucher, P. 1990. Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. J. Mol. Biol. 212, 563-578.
-
(1990)
J. Mol. Biol.
, vol.212
, pp. 563-578
-
-
Bucher, P.1
-
45
-
-
0025610307
-
Codon context
-
Buckingham, R.H. 1990. Codon context. Experientia 46, 1126-1133.
-
(1990)
Experientia
, vol.46
, pp. 1126-1133
-
-
Buckingham, R.H.1
-
46
-
-
0023126266
-
Coevolution of codon usage and tRNA abundance
-
Bulmer, M. 1987. Coevolution of codon usage and tRNA abundance. Nature 325, 728-730.
-
(1987)
Nature
, vol.325
, pp. 728-730
-
-
Bulmer, M.1
-
47
-
-
84993842127
-
Are codon usage patterns in unicellular organisms determined by selection-mutation balance
-
Bulmer, M. 1988. Are codon usage patterns in unicellular organisms determined by selection-mutation balance. J. Euol. Biol. 1, 15-26.
-
(1988)
J. Euol. Biol.
, vol.1
, pp. 15-26
-
-
Bulmer, M.1
-
49
-
-
0027210404
-
DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: Organizational symmetry around the origin of replication
-
Burland, V., Plunkett, G. III, Daniels, D. L., and Blattner, F.R. 1993. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: Organizational symmetry around the origin of replication. Genomics 16, 551-561.
-
(1993)
Genomics
, vol.16
, pp. 551-561
-
-
Burland, V.1
Plunkett, G.2
Daniels, D.L.3
Blattner, F.R.4
-
50
-
-
0026887079
-
A survey of multiple sequence comparison methods
-
Chan, S.C., Wong, A.K.C., and Chiu, D.K.Y. 1992. A survey of multiple sequence comparison methods. Bull. Math. Biol. 54, 563-598.
-
(1992)
Bull. Math. Biol.
, vol.54
, pp. 563-598
-
-
Chan, S.C.1
Wong, A.K.C.2
Chiu, D.K.Y.3
-
51
-
-
85010086514
-
-
In Kolchanov, N.A., and Ratner, V.A., eds., Abstr. Int. Conf. “Modelling and Computer Methods in Molecular Biology and Genetics.” Novosibirsk.
-
Chuzhanova, N.A. 1990. The method of recognition of the ribosomal binding sites based on formal grammars, 14-15. In Kolchanov, N.A., and Ratner, V.A., eds., Abstr. Int. Conf. “Modelling and Computer Methods in Molecular Biology and Genetics.” Novosibirsk.
-
(1990)
The method of recognition of the ribosomal binding sites based on formal grammars
, pp. 14-15
-
-
Chuzhanova, N.A.1
-
53
-
-
0023045765
-
Heuristic informational analysis of sequences
-
Claverie, J.-M., and Bougueleret, L. 1986. Heuristic informational analysis of sequences. Nucleic Acids Res. 14, 179-196.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 179-196
-
-
Claverie, J.-M.1
Bougueleret, L.2
-
54
-
-
0025317956
-
k-tuple frequency analysis: From intron/exon discrimination to T-cell epitope mapping
-
Claverie, J.-M., Sauvaget, I., and Bougueleret, L. 1990. k-tuple frequency analysis: From intron/exon discrimination to T-cell epitope mapping. Methods Enzymol. 183, 252-281.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 252-281
-
-
Claverie, J.-M.1
Sauvaget, I.2
Bougueleret, L.3
-
55
-
-
0024554795
-
A transformational-grammar approach to the study of the regulation of gene expression
-
Collado-Vides, J. 1989. A transformational-grammar approach to the study of the regulation of gene expression. J. Theor. Biol. 136, 403-425.
-
(1989)
J. Theor. Biol.
, vol.136
, pp. 403-425
-
-
Collado-Vides, J.1
-
56
-
-
0026081170
-
A syntactic representation of units of genetic information-a syntax of units of genetic information
-
Collado-Vides, J. 1991a. A syntactic representation of units of genetic information-a syntax of units of genetic information. J. Theor. Biol. 147, 423-432.
-
(1991)
J. Theor. Biol.
, vol.147
, pp. 423-432
-
-
Collado-Vides, J.1
-
57
-
-
0025908881
-
The search for a grammatical theory of gene regulation is formally justified by showing the inadequacy of context-free grammars
-
Collado-Vides, J. 1991b. The search for a grammatical theory of gene regulation is formally justified by showing the inadequacy of context-free grammars. Comput. Appl. Biosci. 7, 321-326.
-
(1991)
Comput. Appl. Biosci.
, vol.7
, pp. 321-326
-
-
Collado-Vides, J.1
-
58
-
-
0026756312
-
Grammatical model of the regulation of gene expression
-
Collado-Vides, J. 1992. Grammatical model of the regulation of gene expression. Proc. Nat. Acad. Sci. USA 89, 9405-9409.
-
(1992)
Proc. Nat. Acad. Sci. USA
, vol.89
, pp. 9405-9409
-
-
Collado-Vides, J.1
-
59
-
-
0027508315
-
The elements for a classification of units of genetic information with a combinatorial components
-
Collado-Vides, J. 1993a. The elements for a classification of units of genetic information with a combinatorial components. J. Theor. Biol. 163, 527-548.
-
(1993)
J. Theor. Biol.
, vol.163
, pp. 527-548
-
-
Collado-Vides, J.1
-
60
-
-
0027254889
-
A linguistic representation of the regulation of transcription initiation. I. An ordered array of complex symbols with distinctive features
-
Collado-Vides, J. 1993b. A linguistic representation of the regulation of transcription initiation. I. An ordered array of complex symbols with distinctive features. BioSystems 2, 87-104.
-
(1993)
BioSystems
, vol.2
, pp. 87-104
-
-
Collado-Vides, J.1
-
61
-
-
0027320283
-
A linguistic representation of the regulation of transcription initiation. II. Distinctive features of sigma 70 promoters and their regulatory binding sites
-
Collado-Vides, J. 1993c. A linguistic representation of the regulation of transcription initiation. II. Distinctive features of sigma 70 promoters and their regulatory binding sites. BioSystems 2, 105-128.
-
(1993)
BioSystems
, vol.2
, pp. 105-128
-
-
Collado-Vides, J.1
-
62
-
-
85010086496
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Collado-Vides, J. 1993d. A linguistic interpretation of a biological database, 487-499. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1992)
A linguistic interpretation of a biological database
, pp. 487-499
-
-
Collado-Vides, J.1
-
63
-
-
0026003072
-
Control site location and transcriptional regulation in Escherichia coli
-
Collado-Vides, J., Magasanik, B., and Gralla, J.D. 1991. Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev. 55, 371-394.
-
(1991)
Microbiol. Rev.
, vol.55
, pp. 371-394
-
-
Collado-Vides, J.1
Magasanik, B.2
Gralla, J.D.3
-
64
-
-
0025572212
-
Characterization of nucleotidic sequences using maximum entropy techniques
-
Cosmi, C., Cuomo, V., Ragosta, M., and Macchiato, M.F. 1990. Characterization of nucleotidic sequences using maximum entropy techniques. J. Theor. Biol. 147, 423-432.
-
(1990)
J. Theor. Biol.
, vol.147
, pp. 423-432
-
-
Cosmi, C.1
Cuomo, V.2
Ragosta, M.3
Macchiato, M.F.4
-
65
-
-
0026049455
-
Molecular evolution of bacteriophages: discrete patterns of codon usage in T4 genes are related to the time of gene expression
-
Cowe, E., and Sharp, P. 1991. Molecular evolution of bacteriophages: discrete patterns of codon usage in T4 genes are related to the time of gene expression. J. Mol. Evol. 33, 13-25.
-
(1991)
J. Mol. Evol.
, vol.33
, pp. 13-25
-
-
Cowe, E.1
Sharp, P.2
-
66
-
-
0004314715
-
Statistical analysis of deoxyribonucleic sequence data- a review
-
Curnow, R.N., and Kirkwood, T.B.L. 1989. Statistical analysis of deoxyribonucleic sequence data- a review. J. R. Statist. Soc. Ser. A. 152, Part 2, 199-220.
-
(1989)
J. R. Statist. Soc. Ser. A. 152, Part
, vol.2
, pp. 199-220
-
-
Curnow, R.N.1
Kirkwood, T.B.L.2
-
67
-
-
0026754531
-
Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes
-
Daniels, D.L., Plunkett, G. III, Burland, V., and Blattner, F.R. 1992. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Science 257, 771-778.
-
(1992)
Science
, vol.257
, pp. 771-778
-
-
Daniels, D.L.1
Plunkett, G.2
Burland, V.3
Blattner, F.R.4
-
68
-
-
0025663103
-
Prediction of rho-independent Escherichia coli transcription terminators
-
D'Aubenton Carafa, Y., Brody, E., and Thermes, C. 1992. Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures. J. Mol Biol. 216, 835-858.
-
(1992)
A statistical analysis of their RNA stem-loop structures. J. Mol Biol.
, vol.216
, pp. 835-858
-
-
D'Aubenton Carafa, Y.1
Brody, E.2
Thermes, C.3
-
69
-
-
0026516824
-
Analysis of the 5'-AAUAAA motif and its flanking sequence in human RNA: Relevance to cDNA library sorting
-
Day, I.N.M. 1992. Analysis of the 5'-AAUAAA motif and its flanking sequence in human RNA: Relevance to cDNA library sorting. Gene 110, 245-249.
-
(1992)
Gene
, vol.110
, pp. 245-249
-
-
Day, I.N.M.1
-
70
-
-
0026598149
-
Critical comparison of consensus methods for molecular sequences
-
Day, W.H.E., and McMorris, F.R. 1992a. Critical comparison of consensus methods for molecular sequences. Nucleic Acids Res. 20, 1093-1099.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1093-1099
-
-
Day, W.H.E.1
McMorris, F.R.2
-
71
-
-
0027076422
-
Threshold consensus methods for molecular sequences
-
Day, W.H.E., and McMorris, F.R. 1992b. Threshold consensus methods for molecular sequences. J. Theor. Biol. 159, 481-489.
-
(1992)
J. Theor. Biol.
, vol.159
, pp. 481-489
-
-
Day, W.H.E.1
McMorris, F.R.2
-
72
-
-
0026943679
-
Consensus sequences based on plurality rule
-
Day, W.H.E., and McMorris, F.R. 1992c. Consensus sequences based on plurality rule. Bull. Math. Biol. 54, 1057-1068.
-
(1992)
Bull. Math. Biol.
, vol.54
, pp. 1057-1068
-
-
Day, W.H.E.1
McMorris, F.R.2
-
73
-
-
0027741429
-
A consensus program for molecular sequences
-
Day, W.H.E., and McMorris, F.R. 1993. A consensus program for molecular sequences. Comput. Appl. Biosci. 9, 653-656.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 653-656
-
-
Day, W.H.E.1
McMorris, F.R.2
-
75
-
-
0027761073
-
Compilation of sequence-specific DNA-binding proteins implicated in transcriptional control in fungi
-
Dhawale, S.S., and Lane, A.C. 1993. Compilation of sequence-specific DNA-binding proteins implicated in transcriptional control in fungi. Nucleic Acids Res. 21, 5537-5546.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5537-5546
-
-
Dhawale, S.S.1
Lane, A.C.2
-
76
-
-
0025851735
-
A predictive models for DNA recognition by the herpes simplex virus protein ICP4
-
Didonato, J.A., Spitzner, J.R., and Muller, M.T. 1991. A predictive models for DNA recognition by the herpes simplex virus protein ICP4. J. Mol. Biol. 219, 451-470.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 451-470
-
-
Didonato, J.A.1
Spitzner, J.R.2
Muller, M.T.3
-
77
-
-
0027944162
-
Gene structure prediction by linguistic methods
-
Dong, S., and Searls, D.B. 1994. Gene structure prediction by linguistic methods. Genomics 23, 540-551.
-
(1994)
Genomics
, vol.23
, pp. 540-551
-
-
Dong, S.1
Searls, D.B.2
-
78
-
-
0025775913
-
Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins
-
D'Onofrio, G., Mouchiroud, D., Aissani, B., Gautier, C., and Bernardi, G. 1991. Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins. J. Mol. Evol. 32, 504-510.
-
(1991)
J. Mol. Evol.
, vol.32
, pp. 504-510
-
-
D'Onofrio, G.1
Mouchiroud, D.2
Aissani, B.3
Gautier, C.4
Bernardi, G.5
-
79
-
-
0026556891
-
A universal correlation among codon positions
-
D'Onofrio, G., and Bernardi, G. 1992. A universal correlation among codon positions. Gene 110, 81-88.
-
(1992)
Gene
, vol.110
, pp. 81-88
-
-
D'Onofrio, G.1
Bernardi, G.2
-
80
-
-
0027190015
-
DNA sequences at immunoglobulin switch region recombination sites
-
Dunnick, W., Hertz, G.Z., Scappino, L., and Gritzmacher, C. 1993. DNA sequences at immunoglobulin switch region recombination sites. Nucleic Acids Res. 21, 365-372.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 365-372
-
-
Dunnick, W.1
Hertz, G.Z.2
Scappino, L.3
Gritzmacher, C.4
-
81
-
-
0027280998
-
Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression
-
Duret, L., Dorkeld, F., and Gautier, C. 1993. Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression. Nucleic Acids Res. 21, 2315-2322.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2315-2322
-
-
Duret, L.1
Dorkeld, F.2
Gautier, C.3
-
82
-
-
0025308614
-
Conserved DNA structures in origins of replication
-
Eckdahl, T.T., and Anderson, J.N. 1990. Conserved DNA structures in origins of replication. Nucleic Acids Res. 18, 1609-1612.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 1609-1612
-
-
Eckdahl, T.T.1
Anderson, J.N.2
-
83
-
-
0028272315
-
RNA sequence analysis using covariance models
-
Eddy, S.R., and Durbin, R. 1994. RNA sequence analysis using covariance models. Nucleic Acids Res. 22, 2079-2088.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2079-2088
-
-
Eddy, S.R.1
Durbin, R.2
-
84
-
-
0021312717
-
Promoter recognition and transcription initiation in E. coli
-
Ehrlich, R., Marin, M., Larousse, A. et al. 1984. Promoter recognition and transcription initiation in E. coli. Folia Biologica 30, 105-118.
-
(1984)
Folia Biologica
, vol.30
, pp. 105-118
-
-
Ehrlich, R.1
Marin, M.2
Larousse, A.3
-
85
-
-
84968732677
-
Neuron network for the recognition of E. coli promoters
-
Ezhov, A.A., Kalambet, Y.A., and Cherny, D.L. 1989. Neuron network for the recognition of E. coli promoters. Studia Biophysica 129, 183-192.
-
(1989)
Studia Biophysica
, vol.129
, pp. 183-192
-
-
Ezhov, A.A.1
Kalambet, Y.A.2
Cherny, D.L.3
-
86
-
-
0026508808
-
Compilation of vertebrate-encoded transcription factors
-
Faisst, S., and Meyer, S. 1992. Compilation of vertebrate-encoded transcription factors. Nucleic Acids Res. 20, 3-26.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3-26
-
-
Faisst, S.1
Meyer, S.2
-
87
-
-
0026736363
-
Determination of eukaryotic protein coding regions using neural networks and information theory
-
Färber, R., Lapedes, A., and Sirotkin, K. 1992. Determination of eukaryotic protein coding regions using neural networks and information theory. J. MoL BioL 226, 471-479.
-
(1992)
J. MoL BioL
, vol.226
, pp. 471-479
-
-
Färber, R.1
Lapedes, A.2
Sirotkin, K.3
-
88
-
-
0026579475
-
Analysis of nonuniformity in intron phase distribution
-
Fedorov, A., Suboch, G., Bujakov, M., and Fedorova, L. 1992. Analysis of nonuniformity in intron phase distribution. Nucleic Acids Res. 20, 2553-2557.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 2553-2557
-
-
Fedorov, A.1
Suboch, G.2
Bujakov, M.3
Fedorova, L.4
-
89
-
-
0025864008
-
Identifying potential tRNA genes in genomic DNA sequences
-
Fichant, G., and Burks, C. 1991. Identifying potential tRNA genes in genomic DNA sequences. J. MoL BioL 220, 659-671.
-
(1991)
J. MoL BioL
, vol.220
, pp. 659-671
-
-
Fichant, G.1
Burks, C.2
-
90
-
-
0023450024
-
Statistical method for predicting protein coding regions in nucleic acid sequences location
-
Fichant, G., and Gautier, C. 1987. Statistical method for predicting protein coding regions in nucleic acid sequences location. Comput. Appl. Biosci. 3, 287-295.
-
(1987)
Comput. Appl. Biosci.
, vol.3
, pp. 287-295
-
-
Fichant, G.1
Gautier, C.2
-
91
-
-
0020480512
-
Recognition of protein coding regions in DNA sequences
-
Fickett, J.W. 1982. Recognition of protein coding regions in DNA sequences. Nucleic Acids Res. 10, 5303-5318.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 5303-5318
-
-
Fickett, J.W.1
-
92
-
-
0028502407
-
Inferring genes from open reading frames
-
Fickett, J.W. 1994. Inferring genes from open reading frames. Computers Chem. 18, 203-205.
-
(1994)
Computers Chem.
, vol.18
, pp. 203-205
-
-
Fickett, J.W.1
-
93
-
-
85010091798
-
A developer's introduction to the gene identification problem
-
Fickett, J.W. 1995. A developer's introduction to the gene identification problem. Computers Chem. 19 (in press).
-
(1995)
Computers Chem. 19 (in press).
-
-
Fickett, J.W.1
-
94
-
-
0027214111
-
Estimation of protein coding density in a corpus of DNA sequence data
-
Fickett, J.W., and Guigo, R. 1993. Estimation of protein coding density in a corpus of DNA sequence data. Nucleic Acids Res. 21, 2837-2844.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2837-2844
-
-
Fickett, J.W.1
Guigo, R.2
-
95
-
-
0027059264
-
Assessment of protein coding measures
-
Fickett, J.W., and Tung, C.-S. 1992. Assessment of protein coding measures. Nucleic Acids Res. 20, 6441-6450.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 6441-6450
-
-
Fickett, J.W.1
Tung, C.-S.2
-
96
-
-
0026758856
-
Base compositional structure of genomes
-
Fickett, J.W., Torney, D.C., and Wolf, D.R. 1992. Base compositional structure of genomes. Genomics 13, 1056-1064.
-
(1992)
Genomics
, vol.13
, pp. 1056-1064
-
-
Fickett, J.W.1
Torney, D.C.2
Wolf, D.R.3
-
97
-
-
0025326291
-
Information content of Caenorhabditis elegans splice site sequences varies with intron length
-
Fields, C.A. 1990. Information content of Caenorhabditis elegans splice site sequences varies with intron length. Nucleic Acids Res. 18, 1509-1512.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 1509-1512
-
-
Fields, C.A.1
-
98
-
-
0025040574
-
gm: A practical tool for automating DNA sequence analysis
-
Fields, C.A., and Soderlund, C.A. 1990. gm: A practical tool for automating DNA sequence analysis. Comput. Appl. Biosci. 6, 263-270.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 263-270
-
-
Fields, C.A.1
Soderlund, C.A.2
-
99
-
-
85010090844
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Fields, C., Adams, M.D., Kerlavage, A.R., Dubnick, M., McCombie, W.R., Martin-Gallardo, A., White, O., and Venter, J.C. 1993. Identification of genes in genomic and EST sequences, 429-433. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1993)
Identification of genes in genomic and EST sequences
, pp. 429-433
-
-
Fields, C.1
Adams, M.D.2
Kerlavage, A.R.3
Dubnick, M.4
McCombie, W.R.5
Martin-Gallardo, A.6
White, O.7
Venter, J.C.8
-
100
-
-
0027286405
-
Computer-assisted prediction, classification, and delimitation of protein-binding sites in nucleic acids
-
Freeh, K., Herrmann, G., and Werner, T. 1993. Computer-assisted prediction, classification, and delimitation of protein-binding sites in nucleic acids, Nucleic Acids Res. 21, 1655-1664.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 1655-1664
-
-
Freeh, K.1
Herrmann, G.2
Werner, T.3
-
101
-
-
0023133752
-
Potential secondary structure at translationinitiation sites
-
Ganoza, M.C., Kofoid, E.C., Marliere, P., and Louis, B.G. 1987. Potential secondary structure at translationinitiation sites. Nucleic Acids Res. 15, 345-360.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 345-360
-
-
Ganoza, M.C.1
Kofoid, E.C.2
Marliere, P.3
Louis, B.G.4
-
102
-
-
12044258550
-
SQUIRREL: Sequence QUiery, Information Retrieval and REporting library
-
Gartmann, C.J., and Grob, U. 1991. SQUIRREL: Sequence QUiery, Information Retrieval and REporting library. A program package for analyzing signals in nucleic acid sequences for the VAX. Nucleic Acids Res. 19, 6033-6040.
-
(1991)
A program package for analyzing signals in nucleic acid sequences for the VAX. Nucleic Acids Res.
, vol.19
, pp. 6033-6040
-
-
Gartmann, C.J.1
Grob, U.2
-
104
-
-
0025095711
-
Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA
-
Gautheret, D., Major, F., and Cedergren, R. 1990. Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA. Comput. Appl. Biosci. 6, 325-331.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 325-331
-
-
Gautheret, D.1
Major, F.2
Cedergren, R.3
-
105
-
-
0024374945
-
Statistical analysis of mammalian pre-mRNA splicing sites
-
Gelfand, M.S. 1989a. Statistical analysis of mammalian pre-mRNA splicing sites. Nucleic Acids Res. 17, 6369-6382.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 6369-6382
-
-
Gelfand, M.S.1
-
106
-
-
85010107791
-
Statistical analysis of mammalian splicing sites
-
Gelfand, M.S. 1989b. Statistical analysis of mammalian splicing sites. MoL BioL 23, 1138-1147.
-
(1989)
MoL BioL
, vol.23
, pp. 1138-1147
-
-
Gelfand, M.S.1
-
107
-
-
0025000924
-
Computer prediction of exon-intron structure of mammalian pre-mRNAs
-
Gelfand, M.S. 1990a. Computer prediction of exon-intron structure of mammalian pre-mRNAs. Nucleic Acids Res. 18, 5865-5869.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5865-5869
-
-
Gelfand, M.S.1
-
108
-
-
0346379290
-
Global methods for the computer prediction of protein-coding regions in nucleotide sequences
-
Gelfand, M.S. 1990b. Global methods for the computer prediction of protein-coding regions in nucleotide sequences. Biotechnology Software 7(4), 3-11.
-
(1990)
Biotechnology Software
, vol.7
, Issue.4
, pp. 3-11
-
-
Gelfand, M.S.1
-
110
-
-
0040855311
-
-
In Gindikin, S., ed., Mathematical Methods of Analysis of Biopolymer Sequences (DIMACS Series in Discrete Mathematics and Theoretical Computer Science,), American Mathematical Society, Providence, RI.
-
Gelfand, M.S. 1992a. Computer functional analysis of nucleotide sequences: Problems and approaches, 19-61. In Gindikin, S., ed., Mathematical Methods of Analysis of Biopolymer Sequences (DIMACS Series in Discrete Mathematics and Theoretical Computer Science, vol. 8), American Mathematical Society, Providence, RI.
-
(1992)
Computer functional analysis of nucleotide sequences: Problems and approaches
, vol.8
, pp. 19-61
-
-
Gelfand, M.S.1
-
111
-
-
84918735965
-
-
In Gindikin, S., ed., Mathematical Methods of Analysis of Biopolymer Sequences (DIMACS Series in Discrete Mathematics and Theoretical Computer Science,). American Mathematical Society, Providence, RI.
-
Gelfand, M.S. 1992b. Prediction of protein-coding regions in DNA of higher eukaryotes, 87-98. In Gindikin, S., ed., Mathematical Methods of Analysis of Biopolymer Sequences (DIMACS Series in Discrete Mathematics and Theoretical Computer Science, vol. 8). American Mathematical Society, Providence, RI.
-
(1992)
Prediction of protein-coding regions in DNA of higher eukaryotes
, vol.8
, pp. 87-98
-
-
Gelfand, M.S.1
-
112
-
-
0026782934
-
Statistical analysis and prediction of the exonic structure of human genes
-
Gelfand, M.S. 1992c. Statistical analysis and prediction of the exonic structure of human genes. J. MoL Evol. 35, 239-252.
-
(1992)
J. MoL Evol.
, vol.35
, pp. 239-252
-
-
Gelfand, M.S.1
-
113
-
-
85010099759
-
-
In Eisenfeld, J., Witten, M., and Levine, D.S., eds., Biomedical Modeling and Simulation, Elsevier, North Holland.
-
Gelfand, M.S., 1992d. Exon and intron types of human genes revisited, 277-288. In Eisenfeld, J., Witten, M., and Levine, D.S., eds., Biomedical Modeling and Simulation, Elsevier, North Holland.
-
(1992)
Exon and intron types of human genes revisited
, pp. 277-288
-
-
Gelfand, M.S.1
-
115
-
-
85010151186
-
-
In: CSAM '93 (Int. Congress on Computer Science and Applied Mathematics, St. Petersburg,).
-
Gelfand, M.S., and Borodovsky, M. 1993. Prediction of exons by the maximum likelihood approach, 153-154. In: CSAM '93 (Int. Congress on Computer Science and Applied Mathematics, St. Petersburg, 1993).
-
(1993)
Prediction of exons by the maximum likelihood approach
, pp. 153-154
-
-
Gelfand, M.S.1
Borodovsky, M.2
-
116
-
-
0027234853
-
Prediction of the exon-intron structure by a dynamic programming approach
-
Gelfand, M.S., and Roytberg, M.A. 1993. Prediction of the exon-intron structure by a dynamic programming approach. BioSystems 30, 173-182.
-
(1993)
BioSystems
, vol.30
, pp. 173-182
-
-
Gelfand, M.S.1
Roytberg, M.A.2
-
117
-
-
85010151181
-
-
In Proc. 3rd Int. Conf. “Bioinformatics and Genome Research,” Tallahassee, FL, June. (in press).
-
Gelfand, M.S., Podolsky, L.I., Astakhova, T.V., and Roytberg, M.A. 1994a. Prediction of the exon-intron structure and multicriterial optimization. In Proc. 3rd Int. Conf. “Bioinformatics and Genome Research,” Tallahassee, FL, June 1994. (in press).
-
(1994)
Prediction of the exon-intron structure and multicriterial optimization.
-
-
Gelfand, M.S.1
Podolsky, L.I.2
Astakhova, T.V.3
Roytberg, M.A.4
-
118
-
-
85010124291
-
Recognition of genes in human DNA sequences
-
Gelfand, M.S., Podolsky, L.I., Astakhova, T.V., and Roytberg, M.A. 1994b. Recognition of genes in human DNA sequences. Technical Report CSE-94-059, The Pennsylvania State University. (Submitted).
-
(1994)
Technical Report CSE-94-059, The Pennsylvania State University. (Submitted).
-
-
Gelfand, M.S.1
Podolsky, L.I.2
Astakhova, T.V.3
Roytberg, M.A.4
-
119
-
-
0025342557
-
A relational database of transcription factors
-
Ghosh, D. 1990. A relational database of transcription factors. Nucleic Acids Res. 18, 1749-1756.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 1749-1756
-
-
Ghosh, D.1
-
120
-
-
0026008894
-
New developments of a transcription factors database
-
Ghosh, D. 1991. New developments of a transcription factors database. Trends Biochem. Sci. 16, 445-447.
-
(1991)
Trends Biochem. Sci.
, vol.16
, pp. 445-447
-
-
Ghosh, D.1
-
121
-
-
0027209218
-
Status of the transcription factors database
-
Ghosh, D. 1993. Status of the transcription factors database. Nucleic Acids Res. 21, 3117-3118.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3117-3118
-
-
Ghosh, D.1
-
122
-
-
0027399530
-
Identification of protein coding regions by database similarity search
-
Gish, W., and States, D.J. 1993. Identification of protein coding regions by database similarity search. Nature Genet. 3, 266-272.
-
(1993)
Nature Genet.
, vol.3
, pp. 266-272
-
-
Gish, W.1
States, D.J.2
-
123
-
-
0027729460
-
Potentially functional regions of nucleic acids recognized by a Kohonen's self-organizing map
-
Giuliano, F., Arrigo, P., Scalia, F., Cardo, P.P., and Damiani, G. 1993. Potentially functional regions of nucleic acids recognized by a Kohonen's self-organizing map. Comput. Appl. Biosci. 9, 687-693.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 687-693
-
-
Giuliano, F.1
Arrigo, P.2
Scalia, F.3
Cardo, P.P.4
Damiani, G.5
-
124
-
-
85010137753
-
-
In Abstr. 6th USSR-France Symp. “Structure and Functions of Proteins and Nucleic Acids.” Tskhaltubo.
-
Golovanov, E.I., Sprizhitsky, Y.A., and Alexandrov, A.A. 1982. Computer analysis of functional sites on nucleotide sequence, 52. In Abstr. 6th USSR-France Symp. “Structure and Functions of Proteins and Nucleic Acids.” Tskhaltubo.
-
(1982)
Computer analysis of functional sites on nucleotide sequence
, pp. 52
-
-
Golovanov, E.I.1
Sprizhitsky, Y.A.2
Alexandrov, A.A.3
-
125
-
-
0025180835
-
Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor
-
Goodrich, J.A., Schwartz, M.L., and McClure, W.R. 1990. Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor. Nucleic Acids Res. 18, 4993-5000.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 4993-5000
-
-
Goodrich, J.A.1
Schwartz, M.L.2
McClure, W.R.3
-
126
-
-
0020491327
-
Codon usage in bacteria: Correlation with gene expressivity
-
Gouy, M., and Gautier, C. 1982. Codon usage in bacteria: Correlation with gene expressivity. Nucleic Acids Res. 10, 7055-7074.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 7055-7074
-
-
Gouy, M.1
Gautier, C.2
-
127
-
-
0021760027
-
The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression
-
Gribskov, M., Devereux, J., and Burgess, R.R. 1984. The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. Nucleic Acids Res. 12, 539-549.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 539-549
-
-
Gribskov, M.1
Devereux, J.2
Burgess, R.R.3
-
128
-
-
0023984827
-
Recognition of ill-defined signals in nucleic acid sequences
-
Grob, U., and Stuber, K. 1988. Recognition of ill-defined signals in nucleic acid sequences. Comput. Appl. Biosci. 4, 79-88.
-
(1988)
Comput. Appl. Biosci.
, vol.4
, pp. 79-88
-
-
Grob, U.1
Stuber, K.2
-
129
-
-
0026647310
-
Prediction of gene structure
-
Guigo, R., Knudsen, S., Drake, N., and Smith, T. 1992. Prediction of gene structure. J. Mol. Biol. 226,141-157.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 141-157
-
-
Guigo, R.1
Knudsen, S.2
Drake, N.3
Smith, T.4
-
130
-
-
0008564408
-
-
In Kosarev, Y.G., and Gusev, V.D., eds., Analysis of Texts and Signals (Computer systems,). Institute of Mathematics, Siberian Branch of Acad. Sci. USSR, Novosibirsk.
-
Gusev, V. D., Kulichkov, V.A., and Chuzhanova, N.A. 1987. Algorithms of recognition of punctuation marks in genetic texts, 3-24. In Kosarev, Yu.G., and Gusev, V.D., eds., Analysis of Texts and Signals (Computer systems, vol. 123). Institute of Mathematics, Siberian Branch of Acad. Sci. USSR, Novosibirsk.
-
(1987)
Algorithms of recognition of punctuation marks in genetic texts
, vol.123
, pp. 3-24
-
-
Gusev, V.D.1
Kulichkov, V.A.2
Chuzhanova, N.A.3
-
131
-
-
0023663451
-
Compilation and comparison of the sequence context around the AUG start codons in Saccharomyces cerevisae mRNAs
-
Hamilton, R., Watanabe, C.K., and de Boer, H.A. 1987. Compilation and comparison of the sequence context around the AUG start codons in Saccharomyces cerevisae mRNAs. Nucleic Acids Res. 15, 3581-3594.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 3581-3594
-
-
Hamilton, R.1
Watanabe, C.K.2
de Boer, H.A.3
-
132
-
-
84920308041
-
Use of H curves in searches for DNA sequences which code for overlapping peptide genes
-
Hamori, E., and Varga, G. 1989. Use of H curves in searches for DNA sequences which code for overlapping peptide genes. FASEB J. 3, A331.
-
(1989)
FASEB J.
, vol.3
, pp. A331
-
-
Hamori, E.1
Varga, G.2
-
133
-
-
0021100793
-
Search algorithm for pattern match analysis of nucleic acid sequences
-
Harr, R., Haggstrom, M., and Gustaffson, P. 1983. Search algorithm for pattern match analysis of nucleic acid sequences. Nucleic Acids Res. 11, 2943-2957.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 2943-2957
-
-
Harr, R.1
Haggstrom, M.2
Gustaffson, P.3
-
134
-
-
0025279906
-
Distribution and consensus of branch point signals in eukaryotic genes: a computerized statistical analysis
-
Harris, N.L., and Senapathy, P. 1990. Distribution and consensus of branch point signals in eukaryotic genes: a computerized statistical analysis. Nucleic Acids Res. 18, 3015-3019.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3015-3019
-
-
Harris, N.L.1
Senapathy, P.2
-
135
-
-
0018640001
-
Secondary structure of MS2 phage RNA and bias in code word usage
-
Hasegava, M., Yasunaga, T., and Miyata, T. 1979. Secondary structure of MS2 phage RNA and bias in code word usage. Nucleic Acids Res. 7, 2073-2079.
-
(1979)
Nucleic Acids Res.
, vol.7
, pp. 2073-2079
-
-
Hasegava, M.1
Yasunaga, T.2
Miyata, T.3
-
136
-
-
0023685544
-
A survey on intron and exon lengths
-
Hawkins, J.D. 1988. A survey on intron and exon lengths. Nucleic Acids Res. 16, 9893-9905.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 9893-9905
-
-
Hawkins, J.D.1
-
137
-
-
0021111879
-
Compilation and analysis of Escherichia coli promoter DNA sequences
-
Hawley, D.K., and McClure, W.R. 1983. Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res. 11, 2237-2255.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 2237-2255
-
-
Hawley, D.K.1
McClure, W.R.2
-
138
-
-
0027274036
-
Sequence analysis by electronic mail server
-
Henikoff, S. 1993. Sequence analysis by electronic mail server. Trends Biochem. Sci. 18, 267-268.
-
(1993)
Trends Biochem. Sci.
, vol.18
, pp. 267-268
-
-
Henikoff, S.1
-
139
-
-
0026696852
-
High information conservation implies that at least three proteins bind independently to F plasmid incD repeats
-
Herman, N.D., and Schneider, T.D. 1992. High information conservation implies that at least three proteins bind independently to F plasmid incD repeats. J. Bacteriol. 174, 3558-3560.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3558-3560
-
-
Herman, N.D.1
Schneider, T.D.2
-
140
-
-
0025372992
-
Identification of consensus patterns in unaligned DNA sequences known to be functionally related
-
Hertz, G.Z., Hartzell, G.W., III, and Stormo, G.D. 1990. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Appl. Biosci. 6, 81-92.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 81-92
-
-
Hertz, G.Z.1
Hartzell, G.W.2
Stormo, G.D.3
-
141
-
-
0022394801
-
Delineation of coding areas in DNA sequences through assignment of codon probability
-
Hinds, B.W., and Blake, R.D. 1985. Delineation of coding areas in DNA sequences through assignment of codon probability. J. Biomol. Struct. Dynam. 3, 543-549.
-
(1985)
J. Biomol. Struct. Dynam.
, vol.3
, pp. 543-549
-
-
Hinds, B.W.1
Blake, R.D.2
-
142
-
-
0026672260
-
Prediction of structural and functional features of protein and nucleic acid sequences by artificial neural networks
-
Hirst, J.D., and Sternberg, M.J.E. 1992. Prediction of structural and functional features of protein and nucleic acid sequences by artificial neural networks. Biochemistry 31, 7211-7219.
-
(1992)
Biochemistry
, vol.31
, pp. 7211-7219
-
-
Hirst, J.D.1
Sternberg, M.J.E.2
-
143
-
-
0026775123
-
An assessment of neural network and statistical approach for prediction of E
-
Horton, P.B., and Kanehisa, M. 1992. An assessment of neural network and statistical approach for prediction of E. coli promoter sites. Nucleic Acids Res. 20, 4331-4338.
-
(1992)
coli promoter sites. Nucleic Acids Res.
, vol.20
, pp. 4331-4338
-
-
Horton, P.B.1
Kanehisa, M.2
-
144
-
-
0025791821
-
Artificial intelligence and molecular biology
-
Hunter, L. 1991. Artificial intelligence and molecular biology. AI Magazine, Winter 1991, 27-36.
-
(1991)
AI Magazine, Winter
, pp. 27-36
-
-
Hunter, L.1
-
146
-
-
0026623434
-
The prediction of exons through an analysis of spliceable open reading frames
-
Hutchinson, G.B., and Hayden, M.R. 1992. The prediction of exons through an analysis of spliceable open reading frames. Nucleic Acids Res. 20, 3453-3462.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3453-3462
-
-
Hutchinson, G.B.1
Hayden, M.R.2
-
147
-
-
85010145836
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int.
-
Hutchinson, G.B., and Hayden, M.R. 1993. SORFIND: A computer program that predicts exons in vertebrate genomic DNA, 513-520. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int.
-
(1993)
SORFIND: A computer program that predicts exons in vertebrate genomic DNA
, pp. 513-520
-
-
Hutchinson, G.B.1
Hayden, M.R.2
-
149
-
-
0026683407
-
Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure
-
Huynen, M.A., Konings, D.A.M., and Hogeveg, P. 1992. Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure. J. Mol. Evol. 34, 280-291.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 280-291
-
-
Huynen, M.A.1
Konings, D.A.M.2
Hogeveg, P.3
-
150
-
-
0019474499
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the repetitive codon in protein genes
-
Ikemura, T. 1981a. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the repetitive codon in protein genes. J. Mol. Biol. 146, 1-21.
-
(1981)
J. Mol. Biol.
, vol.146
, pp. 1-21
-
-
Ikemura, T.1
-
151
-
-
0019824131
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice, that is optimal for the E
-
Ikemura, T. 1981b. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice, that is optimal for the E. coli translational system. J. Mol. Biol. 151, 389-409.
-
(1981)
coli translational system. J. Mol. Biol.
, vol.151
, pp. 389-409
-
-
Ikemura, T.1
-
152
-
-
0019949369
-
Correlation between the abundance of yeast transfer RNAs and the occurrence of the repetitive codon in protein genes: Differences in synonymous codon choice patterns of yeast and Escherichia coli with references to the abundance of isoacceptor transfer RNAs
-
Ikemura, T. 1982. Correlation between the abundance of yeast transfer RNAs and the occurrence of the repetitive codon in protein genes: Differences in synonymous codon choice patterns of yeast and Escherichia coli with references to the abundance of isoacceptor transfer RNAs. J. Mol. Biol. 158, 573-597.
-
(1982)
J. Mol. Biol.
, vol.158
, pp. 573-597
-
-
Ikemura, T.1
-
153
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
Ikemura, T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Euol. 2, 13-34.
-
(1985)
Mol. Biol. Euol.
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
154
-
-
0027403759
-
Dense Alu clustering and a potential new member of the NFkB family within a 90 kilobase HHLA Class III segment
-
Iris, F.J.M. et al. 1993. Dense Alu clustering and a potential new member of the NFkB family within a 90 kilobase HHLA Class III segment. Nature Genet. 3, 137-145.
-
(1993)
Nature Genet.
, vol.3
, pp. 137-145
-
-
Iris, F.J.M.1
-
155
-
-
0025074342
-
Contrasts in codon usage of latent versus productive genes of Epstein-Barr virus: Data and hypothesis
-
Karlin, S., Blaisdell, B.E., and Schachtel, G.A. 1990. Contrasts in codon usage of latent versus productive genes of Epstein-Barr virus: Data and hypothesis. J. Virol. 64, 4264-4273.
-
(1990)
J. Virol.
, vol.64
, pp. 4264-4273
-
-
Karlin, S.1
Blaisdell, B.E.2
Schachtel, G.A.3
-
156
-
-
85010184093
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Kel, A.E., Kolchanov, N.A., Kapitonov, V.V., Ponomarenko, M.P., Likhachev, E.A., Lim, H.A., and Milanesi, L. 1993a. Computer analysis and recognition of functional sites via oligonucleotide pattern distributions, 521-543. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1993)
Computer analysis and recognition of functional sites via oligonucleotide pattern distributions
, pp. 521-543
-
-
Kel, A.E.1
Kolchanov, N.A.2
Kapitonov, V.V.3
Ponomarenko, M.P.4
Likhachev, E.A.5
Lim, H.A.6
Milanesi, L.7
-
157
-
-
0027768731
-
SITE VIDEO: A computer system for functional site analysis and recognition. Investigation of the human splice sites
-
Kel, A.E., Ponomarenko, M.P., Likhachev, E.A., Orlov, Yu.L., Ischenko, I.V., Milanesi, L., and Kolchanov, N.A. 1993b. SITE VIDEO: A computer system for functional site analysis and recognition. Investigation of the human splice sites. Comput. Appl. Biosci. 9, 617-627.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 617-627
-
-
Kel, A.E.1
Ponomarenko, M.P.2
Likhachev, E.A.3
Orlov, Y.L.4
Ischenko, I.V.5
Milanesi, L.6
Kolchanov, N.A.7
-
158
-
-
0026947551
-
Single pass sequencing and genetic mapping of human brain cDNAs
-
Khan, A.S. et al. 1992. Single pass sequencing and genetic mapping of human brain cDNAs. Nature Genet. 2, 180-185.
-
(1992)
Nature Genet.
, vol.2
, pp. 180-185
-
-
Khan, A.S.1
-
159
-
-
0028006889
-
On the identification of group II introns in nucleotide sequence data
-
Knoop, U., Kloska, S., and Brennicke, A. 1994. On the identification of group II introns in nucleotide sequence data. J. Mol. Biol. 242, 389-396.
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 389-396
-
-
Knoop, U.1
Kloska, S.2
Brennicke, A.3
-
160
-
-
85010167080
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Knudsen, S., Guigo, R., and Smith, T. 1993. GenelD-a computer server for prediction of genes in DNA sequences, 545-553. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1993)
GenelD-a computer server for prediction of genes in DNA sequences
, pp. 545-553
-
-
Knudsen, S.1
Guigo, R.2
Smith, T.3
-
161
-
-
0028505429
-
TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins
-
Knuppel, R., Dietze, P., Lehnberg, W., Freeh, K., and Wingender, E. 1994. TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins. J. Comput. Biol. 1, 191-198.
-
(1994)
J. Comput. Biol.
, vol.1
, pp. 191-198
-
-
Knuppel, R.1
Dietze, P.2
Lehnberg, W.3
Freeh, K.4
Wingender, E.5
-
162
-
-
85010095760
-
Computer Analysis of Structure, Function and Evolution of Genetic Macromolecules—Intellectualization Problems
-
Kolchanov, N.A., ed. 1989. Computer Analysis of Structure, Function and Evolution of Genetic Macromolecules—Intellectualization Problems. Institute of Cytology and Genetics, Acad. Sci. USSR, Siberian Branch, Novosibirsk.
-
(1989)
Institute of Cytology and Genetics, Acad. Sci. USSR, Siberian Branch, Novosibirsk.
-
-
Kolchanov, N.A.1
-
163
-
-
85010168853
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Kolchanov, N.A., Kel, A.E., Ponomarenko, M.P., Romachenko, A.G., Likhhachev, J., Milanesi, L., and Lim, H. 1993. Patterns of oligonucleotide distribution within DNA and RNA functional sites, 445-463. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1993)
Patterns of oligonucleotide distribution within DNA and RNA functional sites
, pp. 445-463
-
-
Kolchanov, N.A.1
Kel, A.E.2
Ponomarenko, M.P.3
Romachenko, A.G.4
Likhhachev, J.5
Milanesi, L.6
Lim, H.7
-
164
-
-
0002950692
-
Coexistence of multiple codes in messenger RNA molecules
-
Konings, D.A.M. 1992. Coexistence of multiple codes in messenger RNA molecules. Computers Chem. 16, 153-163.
-
(1992)
Computers Chem.
, vol.16
, pp. 153-163
-
-
Konings, D.A.M.1
-
165
-
-
0002170093
-
-
In Sarma, R.H., and Sarma, M.H., eds., Structure & Methods, Human Genome Initiative & DNA Recombination, Adenine Press, New York.
-
Konopka, A.K. 1990. Mapping functional domains in indiscriminately sequences nucleic acids: A computational approach, 113-125. In Sarma, R.H., and Sarma, M.H., eds., Structure & Methods, vol. I. Human Genome Initiative & DNA Recombination, Adenine Press, New York.
-
(1990)
Mapping functional domains in indiscriminately sequences nucleic acids: A computational approach
, vol.1
, pp. 113-125
-
-
Konopka, A.K.1
-
166
-
-
0025281130
-
Complexity charts can be used to map functional domains in DNA
-
Konopka, A.K., and Owens, J. 1990. Complexity charts can be used to map functional domains in DNA. Gene Anal. Techn. Appl. 7, 35-38.
-
(1990)
Gene Anal. Techn. Appl.
, vol.7
, pp. 35-38
-
-
Konopka, A.K.1
Owens, J.2
-
167
-
-
0028105794
-
Yeast chromosome III: New gene functions
-
Koonin, E.V., Bork, P., and Sander, C. 1994. Yeast chromosome III: New gene functions. EMBOJ. 13, 493-503.
-
(1994)
EMBOJ.
, vol.13
, pp. 493-503
-
-
Koonin, E.V.1
Bork, P.2
Sander, C.3
-
168
-
-
0009589052
-
Computer analysis of nucleic acid regulatory sequences
-
Korn, L.J., Queen, C.L., and Wegman, M.N. 1977. Computer analysis of nucleic acid regulatory sequences. Proc. Natl. Acad. Sci. USA 74, 4401-4405.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 4401-4405
-
-
Korn, L.J.1
Queen, C.L.2
Wegman, M.N.3
-
169
-
-
0027944605
-
A hidden Markov model that finds genes in E
-
Krogh, A., Mian, I.S., and Haussier, D. 1994. A hidden Markov model that finds genes in E. coli DNA. Nucleic Acids Res. 22, 4768.
-
(1994)
coli DNA. Nucleic Acids Res.
, vol.22
, pp. 4768
-
-
Krogh, A.1
Mian, I.S.2
Haussier, D.3
-
170
-
-
0023450021
-
Syntactic pattern analysis of 5'-splice site sequences of mRNA precursors in higher eukaryote genes
-
Kudo, M., Iida, Y., and Shimbo, M. 1987. Syntactic pattern analysis of 5'-splice site sequences of mRNA precursors in higher eukaryote genes. Comput. Appl. Biosci. 3, 319-324.
-
(1987)
Comput. Appl. Biosci.
, vol.3
, pp. 319-324
-
-
Kudo, M.1
Iida, Y.2
Shimbo, M.3
-
171
-
-
0026625944
-
Analysis of context of 5'-splice site sequences in mammalian mRNA precursors by subclass method
-
Kudo, M., Kitamura-Abe, S., Shibo, M., and lida, Y. 1992. Analysis of context of 5'-splice site sequences in mammalian mRNA precursors by subclass method. Comput. Appl. Biosci. 8, 367-376.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 367-376
-
-
Kudo, M.1
Kitamura-Abe, S.2
Shibo, M.3
Iida, Y.4
-
172
-
-
0027056781
-
Synonymous codon preferences in bacteriophage T4: A distinctive use of transfer RNAs from T4 and from its host Escherichia coli
-
Kunisawa, T. 1992. Synonymous codon preferences in bacteriophage T4: A distinctive use of transfer RNAs from T4 and from its host Escherichia coli. J. Theor. Biol. 159, 287-298.
-
(1992)
J. Theor. Biol.
, vol.159
, pp. 287-298
-
-
Kunisawa, T.1
-
173
-
-
0028258377
-
An RNA pattern matching program with enhanced performance and portability
-
Lafferière, A., Gautheret, D., and Cedergren, R. 1994. An RNA pattern matching program with enhanced performance and portability. Comput. Appl. Biosci. 10, 211-212.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 211-212
-
-
Lafferière, A.1
Gautheret, D.2
Cedergren, R.3
-
174
-
-
0042858983
-
-
In Bell, G.I., and Marr, T.G., eds., Computers and DNA (SFI Studies in the Sciences of Complexity,: Proc. Workshop on Interface between Computation Science and Nucleic Acid Sequencing, Santa Fe,). Addison-Wesley, Reading, PA.
-
Lapedes, A., Barnes, C., Burks, C., Färber, R., and Sirotkin, K. 1990. Application of neural networks and other machine learning algorithms to DNA sequence analysis, 157-182. In Bell, G.I., and Marr, T.G., eds., Computers and DNA (SFI Studies in the Sciences of Complexity, vol. VII: Proc. Workshop on Interface between Computation Science and Nucleic Acid Sequencing, Santa Fe, 1988). Addison-Wesley, Reading, PA.
-
(1990)
Application of neural networks and other machine learning algorithms to DNA sequence analysis
, vol.7
, pp. 157-182
-
-
Lapedes, A.1
Barnes, C.2
Burks, C.3
Färber, R.4
Sirotkin, K.5
-
175
-
-
0027912333
-
Detecting subtle signals-A Gibbs sampling strategy for multiple alignment
-
Lawrence, C.J. et al. 1993. Detecting subtle signals-A Gibbs sampling strategy for multiple alignment. Science 262, 208-214.
-
(1993)
Science
, vol.262
, pp. 208-214
-
-
Lawrence, C.J.1
-
176
-
-
45149140303
-
Studies of local stability in histone, U-snRNA and globin precursor mRNAs around transcription termination sites
-
Le, S., Nussinov, R., and Maizel, J.V., Jr. 1990a. Studies of local stability in histone, U-snRNA and globin precursor mRNAs around transcription termination sites. Computers Math. Applic. 20, 49-56.
-
(1990)
Computers Math. Applic.
, vol.20
, pp. 49-56
-
-
Le, S.1
Nussinov, R.2
Maizel, J.V.3
-
177
-
-
0025366681
-
A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency viruses
-
Le, S.-Y., Malim, M.H., Cullen, B.R., and Maizel, J.V. 1990b. A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency viruses. Nucleic Acids Res. 18, 1613-1623.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 1613-1623
-
-
Le, S.-Y.1
Malim, M.H.2
Cullen, B.R.3
Maizel, J.V.4
-
178
-
-
0025940669
-
The candidate gene for the X-linked Kallmann syndrome encodes a protein related to adhesion molecules
-
Legouis, R. et al. 1991. The candidate gene for the X-linked Kallmann syndrome encodes a protein related to adhesion molecules. Cell 67, 423-435.
-
(1991)
Cell
, vol.67
, pp. 423-435
-
-
Legouis, R.1
-
179
-
-
0028316745
-
Automatic identification of group I intron cores in genomic DNA sequences
-
Lisacek, F., Diaz, Y., and Michel, F. 1994. Automatic identification of group I intron cores in genomic DNA sequences. J. MoL BioL 235, 1206-1217.
-
(1994)
J. MoL BioL
, vol.235
, pp. 1206-1217
-
-
Lisacek, F.1
Diaz, Y.2
Michel, F.3
-
180
-
-
0025527807
-
A dictionary of transcription control sequences
-
Locker, J., and Buzard, G. 1990. A dictionary of transcription control sequences. DNA Sequence 1, 3-11.
-
(1990)
DNA Sequence
, vol.1
, pp. 3-11
-
-
Locker, J.1
Buzard, G.2
-
181
-
-
0028020523
-
Evaluation of the exon prediction by GRAIL
-
Lopez, R., Larsen, F., and Prydz, H. 1994. Evaluation of the exon prediction by GRAIL. Genomics 24,133-136.
-
(1994)
Genomics
, vol.24
, pp. 133-136
-
-
Lopez, R.1
Larsen, F.2
Prydz, H.3
-
182
-
-
0024254155
-
Signals determining translational start-site recognition in eukaryotes and their role in prediction of genetic reading frame
-
Louis, B.G., and Ganoza, M.C. 1988. Signals determining translational start-site recognition in eukaryotes and their role in prediction of genetic reading frame. MoL BioL Reports 13, 103-115.
-
(1988)
MoL BioL Reports
, vol.13
, pp. 103-115
-
-
Louis, B.G.1
Ganoza, M.C.2
-
183
-
-
0024409068
-
Neural network models for promoter recognition
-
Lukashin, A.V., Anshelevich, V.V., Amirikyan, B.R., Gragerov, A.I., and Frank-Kamenetskii, M.D. 1989. Neural network models for promoter recognition. J. Biomol. Struct. Dynam. 6, 1123-1133.
-
(1989)
J. Biomol. Struct. Dynam.
, vol.6
, pp. 1123-1133
-
-
Lukashin, A.V.1
Anshelevich, V.V.2
Amirikyan, B.R.3
Gragerov, A.I.4
Frank-Kamenetskii, M.D.5
-
184
-
-
0026444428
-
Conserved signals in the 5' flanking region of eukaryotic nuclear tRNA genes
-
Makalowski, W., and Augustyniak, J., 1992. Conserved signals in the 5' flanking region of eukaryotic nuclear tRNA genes. DNA Sequence 2, 297-301.
-
(1992)
DNA Sequence
, vol.2
, pp. 297-301
-
-
Makalowski, W.1
Augustyniak, J.2
-
185
-
-
0026492782
-
Long-range correlations in DNA and the coding regions
-
Mani, G.S. 1992. Long-range correlations in DNA and the coding regions. J. Theor. BioL 158, 447-464.
-
(1992)
J. Theor. BioL
, vol.158
, pp. 447-464
-
-
Mani, G.S.1
-
186
-
-
0024285002
-
Helix stability in prokaryotic promoter regions
-
Margalit, H., Shapiro, B.A., Nussinov, R. et al. 1988. Helix stability in prokaryotic promoter regions. Biochemistry 27, 5179-5188.
-
(1988)
Biochemistry
, vol.27
, pp. 5179-5188
-
-
Margalit, H.1
Shapiro, B.A.2
Nussinov, R.3
-
187
-
-
0022609082
-
A program for the identification of tRNA-like structures in DNA sequence data
-
Marvel, C.C. 1986. A program for the identification of tRNA-like structures in DNA sequence data. Nucleic Acids Res. 14, 431-435.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 431-435
-
-
Marvel, C.C.1
-
188
-
-
0024996196
-
Structure of the ecdysone-inducible P1 gene of Drosophila melanogaster
-
Maschat, F., Dubertret, M.-L., Therond, P., Claverie, J.-M., and Lepesant, J.-A. 1990. Structure of the ecdysone-inducible P1 gene of Drosophila melanogaster. J. MoL BioL 214, 359-372.
-
(1990)
J. MoL BioL
, vol.214
, pp. 359-372
-
-
Maschat, F.1
Dubertret, M.-L.2
Therond, P.3
Claverie, J.-M.4
Lepesant, J.-A.5
-
189
-
-
0008531250
-
-
In Open Problems of Computational Molecular Biology (4), Book of Extended Abstracts (TSRC, Telluride, July).
-
Matis, S., Xu, Y., Shah, M., Buley, D., Guan, X., Einstein, J.R., Mural, R., and Uberbacher, E. 1994. Detection of control regions in the human genome using intelligent systems, 46-49. In Open Problems of Computational Molecular Biology (4), Book of Extended Abstracts (TSRC, Telluride, July 1994).
-
(1994)
Detection of control regions in the human genome using intelligent systems
, pp. 46-49
-
-
Matis, S.1
Xu, Y.2
Shah, M.3
Buley, D.4
Guan, X.5
Einstein, J.R.6
Mural, R.7
Uberbacher, E.8
-
190
-
-
0023723196
-
Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences
-
McCaldon, P., and Argos, P. 1989. Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences. Proteins: Structure, Function, and Genetics 4, 99-122.
-
(1989)
Proteins: Structure, Function, and Genetics
, vol.4
, pp. 99-122
-
-
McCaldon, P.1
Argos, P.2
-
191
-
-
0027369542
-
Rules that govern transfer RNA identity in protein synthesis
-
McClain, W.H. 1993. Rules that govern transfer RNA identity in protein synthesis. J. MoL BioL 234, 257-280.
-
(1993)
J. MoL BioL
, vol.234
, pp. 257-280
-
-
McClain, W.H.1
-
192
-
-
0023261832
-
Differences between transfer RNA molecules
-
McClain, W.H., and Nicholas, H.B., Jr. 1987. Differences between transfer RNA molecules. J. MoL BioL 194, 635-642.
-
(1987)
J. MoL BioL
, vol.194
, pp. 635-642
-
-
McClain, W.H.1
Nicholas, H.B.2
-
193
-
-
11944257656
-
Caenorhabditis elegans expressed sequence tags identify gene families and potential disease gene homologies
-
McCombie, W.R. et al. 1992. Caenorhabditis elegans expressed sequence tags identify gene families and potential disease gene homologies. Nature Genet. 1, 124-131.
-
(1992)
Nature Genet.
, vol.1
, pp. 124-131
-
-
McCombie, W.R.1
-
194
-
-
0021768587
-
A method for measuring the non-random bias of a codon usage table
-
McLachlan, A.D., Staden, R., and Boswell, D.R. 1984. A method for measuring the non-random bias of a codon usage table. Nucleic Acids Res, 12, 9567-9676.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 9567-9676
-
-
McLachlan, A.D.1
Staden, R.2
Boswell, D.R.3
-
195
-
-
0026332291
-
Evidence for horizontal gene transfer in Escherichia coli speciation
-
Medigue, C., Rouxel, T., Vigier, P., Henaut, A., and Danchin, A. 1991. Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol, Biol, 222, 851-856.
-
(1991)
J. Mol, Biol
, vol.222
, pp. 851-856
-
-
Medigue, C.1
Rouxel, T.2
Vigier, P.3
Henaut, A.4
Danchin, A.5
-
196
-
-
0027900899
-
-
In Hunter, L., Searls, D., and Shavlik, J., eds., Proc. 1st Int. Conf. on Intelligent Systems for Molecular Biology. AAAI / MIT Press, Menlo Park, CA.
-
Mephu Nguifo, E., and Sallantin, J. 1993. Prediction of primate junction gene sequences with a cooperative knowledge acquisition system, 292-300. In Hunter, L., Searls, D., and Shavlik, J., eds., Proc. 1st Int. Conf. on Intelligent Systems for Molecular Biology. AAAI / MIT Press, Menlo Park, CA.
-
(1993)
Prediction of primate junction gene sequences with a cooperative knowledge acquisition system
, pp. 292-300
-
-
Mephu Nguifo, E.1
Sallantin, J.2
-
197
-
-
0040261549
-
Searching for genomic organizational motifs: Explorations of the Escherichia coli chromosome
-
Michaels, G.S., Taylor, R., Hagstrom, R., Price, M., and Overbeek, R. 1993a. Searching for genomic organizational motifs: Explorations of the Escherichia coli chromosome. Comput, Chem, 17, 209-217.
-
(1993)
Comput, Chem
, vol.17
, pp. 209-217
-
-
Michaels, G.S.1
Taylor, R.2
Hagstrom, R.3
Price, M.4
Overbeek, R.5
-
198
-
-
85010171896
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Michaels, G.S., Taylor, R., Hagstrom, R., Price, M., and Overbeek, R. 1993b. Comparative analysis of genomic data: A global look at structural and regulatory features, 521-543. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1993)
Comparative analysis of genomic data: A global look at structural and regulatory features
, pp. 521-543
-
-
Michaels, G.S.1
Taylor, R.2
Hagstrom, R.3
Price, M.4
Overbeek, R.5
-
199
-
-
0023054507
-
New statistical approach to discriminate between protein coding and noncoding regions in DNA sequences and its evaluation
-
Michel, C.J. 1986. New statistical approach to discriminate between protein coding and noncoding regions in DNA sequences and its evaluation. J. Theor. Biol, 120, 223-236.
-
(1986)
J. Theor. Biol
, vol.120
, pp. 223-236
-
-
Michel, C.J.1
-
200
-
-
0027315070
-
Interpreting sequence motifs: A cautionary note
-
Mikkelsen, T. 1993. Interpreting sequence motifs: A cautionary note. Trends Genet, 9, 159.
-
(1993)
Trends Genet
, vol.9
, pp. 159
-
-
Mikkelsen, T.1
-
201
-
-
0001785052
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Milanesi, L., Kolchanov, N.A., Rogozin, I.B., Ischenko, I.V., Kel, A.E., Orlov, Y.L., Ponomarenko, M.P., and Vezzoni, P. 1993. GenViewer: A computing tool for protein-coding regions prediction in nucleotide sequences, 573-587. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1993)
GenViewer: A computing tool for protein-coding regions prediction in nucleotide sequences
, pp. 573-587
-
-
Milanesi, L.1
Kolchanov, N.A.2
Rogozin, I.B.3
Ischenko, I.V.4
Kel, A.E.5
Orlov, Y.L.6
Ponomarenko, M.P.7
Vezzoni, P.8
-
202
-
-
85010101601
-
-
In Kolchanov, N.A., and Ratner, V.A., eds., Abstr. Int. Conf. “Modelling and Computer Methods in Molecular Biology and Genetics.” Novosibirsk.
-
Mil'shina, N.V. 1990. The computer prediction of “mRNA stability” signals on 3'-nontranslated regions of nuclear genes, 30-31. In Kolchanov, N.A., and Ratner, V.A., eds., Abstr. Int. Conf. “Modelling and Computer Methods in Molecular Biology and Genetics.” Novosibirsk.
-
(1990)
The computer prediction of “mRNA stability” signals on 3'-nontranslated regions of nuclear genes
, pp. 30-31
-
-
Mil'shina, N.V.1
-
203
-
-
0024395347
-
Computer analysis of 1,25-dihydroxyvitamin D3-receptor regulated promoters: Identification of a candidate D3-response element
-
Minghetti, P.P., Gibbs, P.E.M., and Norman, A.W. 1989. Computer analysis of 1,25-dihydroxyvitamin D3-receptor regulated promoters: Identification of a candidate D3-response element. Biochem, Biophys. Res, Commun, 162, 869-875.
-
(1989)
Biochem, Biophys. Res, Commun
, vol.162
, pp. 869-875
-
-
Minghetti, P.P.1
Gibbs, P.E.M.2
Norman, A.W.3
-
204
-
-
85010132147
-
-
Perceptrons. MIT Press, Cambridge, MA.
-
Minsky, M., and Papert, S. 1969. Perceptrons. MIT Press, Cambridge, MA.
-
(1969)
-
-
Minsky, M.1
Papert, S.2
-
205
-
-
0023335756
-
Computer programs for the analysis of nucleotide sequences (MALK)
-
Mironov, A.A., Alexandrov, N.N., Lunovskaya-Gurova, L.V., and Kister, A.E. 1987. Computer programs for the analysis of nucleotide sequences (MALK). Mol, Biol, 21, 672-677.
-
(1987)
Mol, Biol
, vol.21
, pp. 672-677
-
-
Mironov, A.A.1
Alexandrov, N.N.2
Lunovskaya-Gurova, L.V.3
Kister, A.E.4
-
206
-
-
0023550056
-
Database bias and the identification of protein coding sequences
-
Moody, M.E., and Fristensky, B. 1987. Database bias and the identification of protein coding sequences. DNA 6, 493-496.
-
(1987)
DNA
, vol.6
, pp. 493-496
-
-
Moody, M.E.1
Fristensky, B.2
-
207
-
-
0023480690
-
Compositional compartmentalization and gene composition in the genome of vertebrates
-
Mouchiroud, D., Fichant, G., and Bernardi, G. 1987. Compositional compartmentalization and gene composition in the genome of vertebrates. J. Mol. Evol, 26, 198-204.
-
(1987)
J. Mol. Evol
, vol.26
, pp. 198-204
-
-
Mouchiroud, D.1
Fichant, G.2
Bernardi, G.3
-
208
-
-
0023765518
-
The compositional distribution of coding sequences and DNA molecules in humans and murids
-
Mouchiroud, D., Gautier, G., and Bernardi, G. 1988. The compositional distribution of coding sequences and DNA molecules in humans and murids. J. Mol, Evol. 27, 311-320.
-
(1988)
J. Mol, Evol.
, vol.27
, pp. 311-320
-
-
Mouchiroud, D.1
Gautier, G.2
Bernardi, G.3
-
209
-
-
0024989878
-
Codon usage changes and sequence dissimilarity between human and rat
-
Mouchiroud, D., and Gautier, G. 1990. Codon usage changes and sequence dissimilarity between human and rat. J. Mol, Evol, 31, 81-91.
-
(1990)
J. Mol, Evol
, vol.31
, pp. 81-91
-
-
Mouchiroud, D.1
Gautier, G.2
-
210
-
-
0026657738
-
Splicing signals in Drosophila: Intron size, information content, and consensus sequences
-
Mount, S.M., Burks, C., Hertz, G., Stormo, G.D., White, O., and Fields, C. 1992. Splicing signals in Drosophila: Intron size, information content, and consensus sequences. Nucleic Acids Res. 20, 4255-4262.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 4255-4262
-
-
Mount, S.M.1
Burks, C.2
Hertz, G.3
Stormo, G.D.4
White, O.5
Fields, C.6
-
211
-
-
0022596380
-
Analysis of the occurrence of promoter-sites in DNA
-
Mulligan, M.E., and McClure, W.R. 1986. Analysis of the occurrence of promoter-sites in DNA. Nucleic Acids Res. 14, 109-126.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 109-126
-
-
Mulligan, M.E.1
McClure, W.R.2
-
212
-
-
0021760063
-
Escherichia coli promoter sequence predict in vitro RNA polymerase selectivity
-
Mulligan, M.E., Hawley, D.K., Entriken, R., and McClure, W.R. 1984. Escherichia coli promoter sequence predict in vitro RNA polymerase selectivity. Nucleic Acids Res. 12, 789-800.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 789-800
-
-
Mulligan, M.E.1
Hawley, D.K.2
Entriken, R.3
McClure, W.R.4
-
213
-
-
85010186777
-
-
In Open Problems of Computational Molecular Biology (4), Book of Extended Abstracts (TSRC, Telluride, July 1994)
-
Mural, R.J., Buley, D., Einstein, R., Guan, X., Matis, S., Shah, M., Xu, Y., and Uberbacher, E.C. 1994. Integrated gene recognition, modeling and database comparison in the GRAIL and GenQuest environments, 53-55. In Open Problems of Computational Molecular Biology (4), Book of Extended Abstracts (TSRC, Telluride, July 1994).
-
(1994)
Integrated gene recognition, modeling and database comparison in the GRAIL and GenQuest environments
, pp. 53-55
-
-
Mural, R.J.1
Buley, D.2
Einstein, R.3
Guan, X.4
Matis, S.5
Shah, M.6
Xu, Y.7
Uberbacher, E.C.8
-
214
-
-
85010101564
-
-
In Bell, G.I., and Marr, T.G., eds., Computers and DNA. Addison-Wesley, Reading, PA.
-
Nakata, K. 1990. Statistical analysis of nucleic acid sequences, 203-211. In Bell, G.I., and Marr, T.G., eds., Computers and DNA. Addison-Wesley, Reading, PA.
-
(1990)
Statistical analysis of nucleic acid sequences
, pp. 203-211
-
-
Nakata, K.1
-
215
-
-
0022432282
-
Prediction of splice junctions in mRNA sequences
-
Nakata, K., Kanehisa, M., and DeLisi, C. 1985. Prediction of splice junctions in mRNA sequences. Nucleic Acids Res, 13, 5327-5340.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 5327-5340
-
-
Nakata, K.1
Kanehisa, M.2
DeLisi, C.3
-
216
-
-
0024058985
-
Discriminant analysis of promoter regions in Escherichia coli sequences
-
Nakata, K., Kanehisa, M., and Maizel, J.V., Jr. 1988. Discriminant analysis of promoter regions in Escherichia coli sequences. Comput. Appl, Biosci, 4, 367-371.
-
(1988)
Comput. Appl, Biosci
, vol.4
, pp. 367-371
-
-
Nakata, K.1
Kanehisa, M.2
Maizel, J.V.3
-
217
-
-
0023415282
-
An algorithm for discriminating sequences and its application to yeast transfer RNA
-
Nicholas, H.B., Jr., and McClain, W.H. 1987. An algorithm for discriminating sequences and its application to yeast transfer RNA. Comput, Appl, Biosci. 3, 177-181.
-
(1987)
Comput, Appl, Biosci.
, vol.3
, pp. 177-181
-
-
Nicholas, H.B.1
McClain, W.H.2
-
218
-
-
0023091817
-
Comparison of tRNA sequences
-
Nicholas, H.B., Jr., Chen, Y., and McClain, W.H. 1987. Comparison of tRNA sequences. Comput, Appl, Biosci. 3, 53.
-
(1987)
Comput, Appl, Biosci.
, vol.3
, pp. 53
-
-
Nicholas, H.B.1
Chen, Y.2
McClain, W.H.3
-
219
-
-
0021191797
-
Promoter helical structure variations at the Escherichia coli polymerase interactive sites
-
Nussinov, R. 1984a. Promoter helical structure variations at the Escherichia coli polymerase interactive sites. J. Biol. Chem. 259, 6798-6805.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 6798-6805
-
-
Nussinov, R.1
-
220
-
-
0021125182
-
Structural features are as important as sequence homologies in Drosophila heat shock upstream regions
-
Nussinov, R. 1984b. Structural features are as important as sequence homologies in Drosophila heat shock upstream regions. J. Mol. EvoL 20, 106-110.
-
(1984)
J. Mol. EvoL
, vol.20
, pp. 106-110
-
-
Nussinov, R.1
-
221
-
-
0021791134
-
Large helical conformational deviations from ideal B-DNA and prokaryotic regulatory sites
-
Nussinov, R. 1985a. Large helical conformational deviations from ideal B-DNA and prokaryotic regulatory sites. J. Theor. Biol. 115, 179-189.
-
(1985)
J. Theor. Biol.
, vol.115
, pp. 179-189
-
-
Nussinov, R.1
-
222
-
-
0022388302
-
Structural wrinkles and the genomic regulatory sites of eukaryotes
-
Nussinov, R. 1985b. Structural wrinkles and the genomic regulatory sites of eukaryotes. J. Mol. Evol. 22, 150-159.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 150-159
-
-
Nussinov, R.1
-
223
-
-
0021638424
-
Periodic structurally similar oligomers are found on one side of the axes of symmetry in the lac, trp and gal operators
-
Nussinov, R., and Lennon, G.G. 1984. Periodic structurally similar oligomers are found on one side of the axes of symmetry in the lac, trp and gal operators. J. Biomol. Struct. Dynam. 2, 387-395.
-
(1984)
J. Biomol. Struct. Dynam.
, vol.2
, pp. 387-395
-
-
Nussinov, R.1
Lennon, G.G.2
-
224
-
-
0021740571
-
Enhancer elements share local homologous twist-angle variations with a helical periodicity
-
Nussinov, R., Shapiro, B., Lipkin, L.E., and Maizel, J.V. 1984. Enhancer elements share local homologous twist-angle variations with a helical periodicity. Biochim. Biophys. Acta 783, 246-257.
-
(1984)
Biochim. Biophys. Acta
, vol.783
, pp. 246-257
-
-
Nussinov, R.1
Shapiro, B.2
Lipkin, L.E.3
Maizel, J.V.4
-
225
-
-
0022323028
-
Markedly unbiased codon usage in Bacillus subtilis
-
Ogasawara, N. 1985. Markedly unbiased codon usage in Bacillus subtilis. Gene 40, 145-150.
-
(1985)
Gene
, vol.40
, pp. 145-150
-
-
Ogasawara, N.1
-
227
-
-
0026947554
-
Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression
-
Okubo, K. et al. 1992. Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nature Genet. 2, 172-179.
-
(1992)
Nature Genet.
, vol.2
, pp. 172-179
-
-
Okubo, K.1
-
228
-
-
0026572003
-
The complete DNA sequence of yeast chromosome III
-
Oliver, S.G. et al. 1992. The complete DNA sequence of yeast chromosome III. Nature 357, 38-46.
-
(1992)
Nature
, vol.357
, pp. 38-46
-
-
Oliver, S.G.1
-
229
-
-
0024511781
-
Escherichia coli promoters. I. Consensus as it relates to spacing class, specificity, repeat substructure, and three-dimensional organization
-
O'Neill, M.C. 1989a. Escherichia coli promoters. I. Consensus as it relates to spacing class, specificity, repeat substructure, and three-dimensional organization. J. Biol. Chem. 264, 5522-5530.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 5522-5530
-
-
O'Neill, M.C.1
-
231
-
-
0026024281
-
Training back-propagation neural networks to define and detect DNA-binding sites
-
O'Neill, M.C. 1990. Training back-propagation neural networks to define and detect DNA-binding sites. Nucleic Acids Res. 19, 313-318.
-
(1990)
Nucleic Acids Res.
, vol.19
, pp. 313-318
-
-
O'Neill, M.C.1
-
232
-
-
0026628288
-
Escherichia coli promoters: neural networks develop distinct descriptions in learning to search for promoters of different spacing classes
-
O'Neill, M.C. 1992. Escherichia coli promoters: neural networks develop distinct descriptions in learning to search for promoters of different spacing classes. Nucleic Acids Res. 20, 3471-3477.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3471-3477
-
-
O'Neill, M.C.1
-
233
-
-
0024565511
-
Escherichia coli promoters. II. A spacing-class dependent promoter search protocol
-
O'Neill, M.C., and Chiafari, F. 1989. Escherichia coli promoters. II. A spacing-class dependent promoter search protocol. J. Biol. Chem. 264, 5531-5534.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 5531-5534
-
-
O'Neill, M.C.1
Chiafari, F.2
-
234
-
-
0022120409
-
A microcomputer program for the identification of tRNA genes
-
Paolella, G., and Russo, T. 1985. A microcomputer program for the identification of tRNA genes. Comput. Appl. Biosci. 1, 149-151.
-
(1985)
Comput. Appl. Biosci.
, vol.1
, pp. 149-151
-
-
Paolella, G.1
Russo, T.2
-
235
-
-
0027519338
-
Information analysis of sequences that bind the replication initiator RepA
-
Papp, P.P., Chattoraj, D.K., and Schneider, T.D. 1993. Information analysis of sequences that bind the replication initiator RepA. J. Mol. Biol. 233, 219-230.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 219-230
-
-
Papp, P.P.1
Chattoraj, D.K.2
Schneider, T.D.3
-
236
-
-
0028214356
-
Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions
-
Pavesi, A., Conterio, F., Bolchi, A., Dieci, G., and Ottonello, S. 1994. Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions. Nucleic Acids Res. 22, 1247-1256.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1247-1256
-
-
Pavesi, A.1
Conterio, F.2
Bolchi, A.3
Dieci, G.4
Ottonello, S.5
-
237
-
-
0027097378
-
Multiple alignment, communication cost, and graph matching
-
Pevzner, P.A. 1992. Multiple alignment, communication cost, and graph matching. SIAM J. Appl. Math. 52, 1763-1779.
-
(1992)
SIAM J. Appl. Math.
, vol.52
, pp. 1763-1779
-
-
Pevzner, P.A.1
-
238
-
-
0021907101
-
Consensus symmetry pattern in E
-
Pivec, L., Rozkot, F., Sazelova, P.S., and Vitek, A. 1985. Consensus symmetry pattern in E. coli promoter sequences. Folia Biologica 31, 213-234.
-
(1985)
coli promoter sequences. Folia Biologica
, vol.31
, pp. 213-234
-
-
Pivec, L.1
Rozkot, F.2
Sazelova, P.S.3
Vitek, A.4
-
239
-
-
0023089714
-
Sequence distributions associated with DNA curvature are found upstream of strong E. coli promoters
-
Plaskon, R.R., and Wartell, R.M. 1987. Sequence distributions associated with DNA curvature are found upstream of strong E. coli promoters. Nucleic Acids Res. 15, 785-796.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 785-796
-
-
Plaskon, R.R.1
Wartell, R.M.2
-
240
-
-
0027219606
-
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes
-
Plunkett, G. III, Burland, V., Daniels, D.L., and Blattner, F.R. 1993. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Nucleic Acids Res. 21, 3391-3398.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3391-3398
-
-
Plunkett, G.1
Burland, V.2
Daniels, D.L.3
Blattner, F.R.4
-
241
-
-
0025831356
-
SIGNAL SCAN: A computer program that scans DNA for eukaryotic transcriptional elements
-
Prestridge, D.S. 1991. SIGNAL SCAN: A computer program that scans DNA for eukaryotic transcriptional elements. Comput. Appl. Biosci. 7, 203-206.
-
(1991)
Comput. Appl. Biosci.
, vol.7
, pp. 203-206
-
-
Prestridge, D.S.1
-
242
-
-
0021889143
-
Application of learning techniques to splicing site recognition
-
Quinqueton, J., and Moreau, J. 1985. Application of learning techniques to splicing site recognition. Biochimie 67, 541-548.
-
(1985)
Biochimie
, vol.67
, pp. 541-548
-
-
Quinqueton, J.1
Moreau, J.2
-
243
-
-
0026598151
-
An application of maximum entropy techniques to determine homogeneous sets of nucleotidic sequences
-
Ragosta, M., Cosmi, C., Cuomo, V., and Macchiato, M. 1992. An application of maximum entropy techniques to determine homogeneous sets of nucleotidic sequences. J. Theor. Biol. 155, 129-136.
-
(1992)
J. Theor. Biol.
, vol.155
, pp. 129-136
-
-
Ragosta, M.1
Cosmi, C.2
Cuomo, V.3
Macchiato, M.4
-
244
-
-
0020053215
-
Key for protein coding sequence identification: Computer analysis of codon strategy
-
Rodier, F., Gabarro-Arpa, J., Ehrlich, R., and Reiss, C. 1982. Key for protein coding sequence identification: Computer analysis of codon strategy. Nucleic Acids Res. 10, 391-402.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 391-402
-
-
Rodier, F.1
Gabarro-Arpa, J.2
Ehrlich, R.3
Reiss, C.4
-
245
-
-
0021845922
-
Localization of the initiation of translation in messenger RNAs of prokaryotes by learning techniques
-
Rodier, F., and Sallantin, J. 1985. Localization of the initiation of translation in messenger RNAs of prokaryotes by learning techniques. Biochimie 67, 533-539.
-
(1985)
Biochimie
, vol.67
, pp. 533-539
-
-
Rodier, F.1
Sallantin, J.2
-
247
-
-
0024327155
-
A novel method for promoter search enhanced by function-specific subgrouping of promoters-developed and tested on E. coli system
-
Rozkot, F., Sazelova, P., and Pivec, I. 1989. A novel method for promoter search enhanced by function-specific subgrouping of promoters-developed and tested on E. coli system. Nucleic Acids Res. 17, 4799-4815.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 4799-4815
-
-
Rozkot, F.1
Sazelova, P.2
Pivec, I.3
-
248
-
-
0021812731
-
Search for promoter sites of prokaryotic DNA using learning techniques
-
Sallantin, J., Haiech, J., and Rodier, F. 1985. Search for promoter sites of prokaryotic DNA using learning techniques. Biochimie 67, 549-553.
-
(1985)
Biochimie
, vol.67
, pp. 549-553
-
-
Sallantin, J.1
Haiech, J.2
Rodier, F.3
-
249
-
-
0027511683
-
Contamination of cDNA sequences in databases
-
Savakis, C., and Doelz, R. 1993. Contamination of cDNA sequences in databases. Science 259, 1677-1678.
-
(1993)
Science
, vol.259
, pp. 1677-1678
-
-
Savakis, C.1
Doelz, R.2
-
250
-
-
0026326782
-
Evidence for selective evolution in codon usage in conserved amino acid sequences of human alphaherpesvirus proteins
-
Schachtel, G.A., Bucher, P., Mocarski, E.S., Blaisdell, B.E., and Karlin, S. 1991. Evidence for selective evolution in codon usage in conserved amino acid sequences of human alphaherpesvirus proteins. J. Mol. Evol. 33, 483-494.
-
(1991)
J. Mol. Evol.
, vol.33
, pp. 483-494
-
-
Schachtel, G.A.1
Bucher, P.2
Mocarski, E.S.3
Blaisdell, B.E.4
Karlin, S.5
-
251
-
-
0025008168
-
Sequence logos: a new way to display consensus structures
-
Schneider, T.D., and Stephens, R.M. 1990. Sequence logos: a new way to display consensus structures. Nucleic Acids Res. 18, 6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
252
-
-
0024533114
-
Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique
-
Schneider, T.D., and Stormo, G.D. 1989. Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique. Nucleic Acids Res. 17, 659-674.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 659-674
-
-
Schneider, T.D.1
Stormo, G.D.2
-
253
-
-
0023042012
-
Information content of binding sites on nucleotide sequences
-
Schneider, T.D., Stormo, G.D., Gold, L., and Ehrenfeucht, A. 1986. Information content of binding sites on nucleotide sequences. J. Mol. Biol. 188, 415-431.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 415-431
-
-
Schneider, T.D.1
Stormo, G.D.2
Gold, L.3
Ehrenfeucht, A.4
-
254
-
-
0027321823
-
Identification and characterization of E
-
Schurr, T., Nadir, E., and Margalit, H. 1993. Identification and characterization of E. coli ribosomal binding sites by free energy computation. Nucleic Acids Res. 21, 4019-4023.
-
(1993)
coli ribosomal binding sites by free energy computation. Nucleic Acids Res.
, vol.21
, pp. 4019-4023
-
-
Schurr, T.1
Nadir, E.2
Margalit, H.3
-
257
-
-
85010094364
-
-
In Lim, H. A., Fickett, J.W., Cantor C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Searls, D., and Dong, S. 1993. A syntactic pattern recognition system for DNA sequences, 521-543. In Lim, H. A., Fickett, J.W., Cantor C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1993)
A syntactic pattern recognition system for DNA sequences
, pp. 521-543
-
-
Searls, D.1
Dong, S.2
-
258
-
-
27244462290
-
New elements of glucocorticoid-receptor binding sites of hormone-regulated genes
-
Seledtsov, I.A., Solovyev, V.V., and Merkulova, T.1.1991. New elements of glucocorticoid-receptor binding sites of hormone-regulated genes. Biochim. Biophys. Acta 1089, 367-376.
-
(1991)
Biochim. Biophys. Acta
, vol.1089
, pp. 367-376
-
-
Seledtsov, I.A.1
Solovyev, V.V.2
Merkulova, T.3
-
259
-
-
0025321246
-
Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project
-
Senapathy, P., Shapiro, M.B., and Harris, N.L. 1990. Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project. Methods Enzymol. 183, 252-281.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 252-281
-
-
Senapathy, P.1
Shapiro, M.B.2
Harris, N.L.3
-
260
-
-
85010098925
-
-
In Kolchanov, N.A., and Ratner, V.A., eds., Abstr. Int. Conf. “Modelling and Computer Methods in Molecular Biology and Genetics”. Novosibirsk.
-
Shabalina, S.A., Roytberg, M.A., Kondrashov, A.S., and Vernoslov, S.E. 1990. Some characteristic features of 5'-regulatory regions of heat shock protein genes, 16-17. In Kolchanov, N.A., and Ratner, V.A., eds., Abstr. Int. Conf. “Modelling and Computer Methods in Molecular Biology and Genetics”. Novosibirsk.
-
(1990)
Some characteristic features of 5'-regulatory regions of heat shock protein genes
, pp. 16-17
-
-
Shabalina, S.A.1
Roytberg, M.A.2
Kondrashov, A.S.3
Vernoslov, S.E.4
-
261
-
-
0023651307
-
RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression
-
Shapiro, M.B., and Senapathy, P. 1987. RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression. Nucleic Acids Res. 15, 7155-7174.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 7155-7174
-
-
Shapiro, M.B.1
Senapathy, P.2
-
262
-
-
0024967181
-
Codon usage and gene expression level in Dictyostelium discoideum: Highly expressed genes do “prefer” optimal codons
-
Sharp, P.M., and Devine, K.M. 1989. Codon usage and gene expression level in Dictyostelium discoideum: Highly expressed genes do “prefer” optimal codons. Nucleic Acids Res. 17, 5029-5039.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 5029-5039
-
-
Sharp, P.M.1
Devine, K.M.2
-
263
-
-
0022856787
-
An evolutionary perspective on synonymous codon usage in unicellular organisms
-
Sharp, P.M., and Li, W.-H. 1986a. An evolutionary perspective on synonymous codon usage in unicellular organisms. J. Mol. Evol. 24, 28-38.
-
(1986)
J. Mol. Evol.
, vol.24
, pp. 28-38
-
-
Sharp, P.M.1
Li, W.-H.2
-
264
-
-
0023046211
-
Codon usage in regulatory genes in Escherichia coli does not reflect selection for “rare” codons
-
Sharp, P.M., and Li, W.-H. 1986b. Codon usage in regulatory genes in Escherichia coli does not reflect selection for “rare” codons. Nucleic Acids Res. 14, 7737-7749.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 7737-7749
-
-
Sharp, P.M.1
Li, W.-H.2
-
265
-
-
0023650543
-
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
-
Sharp, P.M., and Li, W.-H. 1987. The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.-H.2
-
266
-
-
0027161465
-
Regional base composition variation along yeast chromosome III: Evolution of chromosome primary structure
-
Sharp, P.M., and Lloyd, A.T. 1993. Regional base composition variation along yeast chromosome III: Evolution of chromosome primary structure. Nucleic Acids Res. 21, 179-183.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 179-183
-
-
Sharp, P.M.1
Lloyd, A.T.2
-
267
-
-
0023046874
-
Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
-
Sharp, P.M., Tuohy, T.M.F., and Mosurski, K.R. 1986. Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res. 14, 5125-5143.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 5125-5143
-
-
Sharp, P.M.1
Tuohy, T.M.F.2
Mosurski, K.R.3
-
268
-
-
0023762645
-
Codon usage patterns in Escherichia coli
-
Sharp, P.M., Cowe, E., Higgins, D.G., Shields, D.C., Wolfe, K.H., and Wright, F. 1988. Codon usage patterns in Escherichia coli. Bacillus subtilis, Saccharomyces cerevisae, Schizosaccharomyces pombe. Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Res. 16, 8207-8211.
-
(1988)
Bacillus subtilis, Saccharomyces cerevisae, Schizosaccharomyces pombe. Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Res.
, vol.16
, pp. 8207-8211
-
-
Sharp, P.M.1
Cowe, E.2
Higgins, D.G.3
Shields, D.C.4
Wolfe, K.H.5
Wright, F.6
-
269
-
-
85010159548
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL). World Scientific, Singapore.
-
Shavlik, J.W., Towell, G.G., and Noordewier, M.O. 1993. Using knowledge-based neural networks to refine existing biological theories, 377-390. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL). World Scientific, Singapore.
-
(1993)
Using knowledge-based neural networks to refine existing biological theories
, pp. 377-390
-
-
Shavlik, J.W.1
Towell, G.G.2
Noordewier, M.O.3
-
270
-
-
0025307835
-
Specificity and flexibility of the recognition of DNA helical structure by eukaryotic topoisomarse
-
Shen, C.C., and Shen, C.-K.J. 1990. Specificity and flexibility of the recognition of DNA helical structure by eukaryotic topoisomarse. I. J. Mol. Biol. 212, 67-78.
-
(1990)
I. J. Mol. Biol.
, vol.212
, pp. 67-78
-
-
Shen, C.C.1
Shen, C.-K.J.2
-
271
-
-
0019542835
-
Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justifications
-
Shepherd, J.C.W. 1981. Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justifications. Proc. Natl. Acad. Sci. USA 78, 1596-1600.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 1596-1600
-
-
Shepherd, J.C.W.1
-
272
-
-
0023652058
-
Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases
-
Shields, D.C., and Sharp, P.M. 1987. Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Res. 15, 8023-8040.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 8023-8040
-
-
Shields, D.C.1
Sharp, P.M.2
-
273
-
-
0024116811
-
“Silent” sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons
-
Shields, D.C., Sharp, P.M., Higgins, D.H., and Wright, F. 1988. “Silent” sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons. Mol. Biol. Evol. 5, 704-716.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 704-716
-
-
Shields, D.C.1
Sharp, P.M.2
Higgins, D.H.3
Wright, F.4
-
274
-
-
0026667410
-
GCWIND: A microcomputer program for identifying open reading frames according to codon positional G + C content
-
Shields, D.C., Higgins, D.G., and Sharp, P.M. 1992. GCWIND: A microcomputer program for identifying open reading frames according to codon positional G + C content. Comput. Appl. Biosci. 8, 521-523.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 521-523
-
-
Shields, D.C.1
Higgins, D.G.2
Sharp, P.M.3
-
275
-
-
0025978390
-
Fine structural features of the chloroplast genome: Comparison of the sequenced chloroplast genomes
-
Shimada, H., and Sugiura, M. 1991. Fine structural features of the chloroplast genome: Comparison of the sequenced chloroplast genomes. Nucleic Acids Res. 19, 983-995.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 983-995
-
-
Shimada, H.1
Sugiura, M.2
-
276
-
-
0023039521
-
IBM microcomputer programs that analyze DNA sequences for tRNA genes
-
Shortridge, R.D., Pirtle, I.L., and Pirtle, R.M. 1986. IBM microcomputer programs that analyze DNA sequences for tRNA genes. Comput. Appl. Biosci. 2, 13-17.
-
(1986)
Comput. Appl. Biosci.
, vol.2
, pp. 13-17
-
-
Shortridge, R.D.1
Pirtle, I.L.2
Pirtle, R.M.3
-
277
-
-
0022616874
-
Constraint on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation
-
Shpaer, E.G. 1986. Constraint on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation. J. Mol. Biol. 188, 555-564.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 555-564
-
-
Shpaer, E.G.1
-
278
-
-
0019482685
-
The coding function of nucleotide sequences can be discerned by statistical analysis
-
Shulman, M.J., Steinberg, C.M., Westmoreland, N. 1981. The coding function of nucleotide sequences can be discerned by statistical analysis. J. Theor. Biol. 88, 409-420.
-
(1981)
J. Theor. Biol.
, vol.88
, pp. 409-420
-
-
Shulman, M.J.1
Steinberg, C.M.2
Westmoreland, N.3
-
279
-
-
0023896608
-
Structure of vertebrate genes: A statistical analysis implicating selection
-
Smith, M.W. 1988. Structure of vertebrate genes: A statistical analysis implicating selection. J. Mol. Evol. 27, 45-55.
-
(1988)
J. Mol. Evol.
, vol.27
, pp. 45-55
-
-
Smith, M.W.1
-
280
-
-
0027229632
-
Identification of coding regions in genomic DNA sequences: An application of dynamic programming and neural networks
-
Snyder, E.E., and Stormo, G.D. 1993. Identification of coding regions in genomic DNA sequences: An application of dynamic programming and neural networks. Nucleic Acids Res. 21, 607-613.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 607-613
-
-
Snyder, E.E.1
Stormo, G.D.2
-
281
-
-
0027214697
-
Fractal graphical representation and analysis of DNA and protein sequences
-
Solovyev, V.V. 1993. Fractal graphical representation and analysis of DNA and protein sequences. BioSystems 30, 137-160.
-
(1993)
BioSystems
, vol.30
, pp. 137-160
-
-
Solovyev, V.V.1
-
282
-
-
0027900893
-
-
In Hunter, L., Searls, D., and Shavlik, J., eds., Proc. 1st Int. Conf. Intelligent Systems for Molecular Biology (National Library of Medicine, Bethesda, MD,).
-
Solovyev, V.V., and Lawrence, C.B. 1993. Identification of human gene functional regions based on oligonucleotide composition, 371-379. In Hunter, L., Searls, D., and Shavlik, J., eds., Proc. 1st Int. Conf. Intelligent Systems for Molecular Biology (National Library of Medicine, Bethesda, MD, 1993).
-
(1993)
Identification of human gene functional regions based on oligonucleotide composition
, pp. 371-379
-
-
Solovyev, V.V.1
Lawrence, C.B.2
-
283
-
-
0026297999
-
A new approach to classification of DNA regions based on fractal representation of functionally similar regions
-
Solovyev, V.V., Korolev, S.V., Tumanyan, V.G., and Lim, H.A. 1991. A new approach to classification of DNA regions based on fractal representation of functionally similar regions. Proc. Acad. Sci. USSR 319, 1496-1500.
-
(1991)
Proc. Acad. Sci. USSR
, vol.319
, pp. 1496-1500
-
-
Solovyev, V.V.1
Korolev, S.V.2
Tumanyan, V.G.3
Lim, H.A.4
-
284
-
-
0003173260
-
A new approach for the classification of functional regions of DNA sequences based on fractal representation
-
Solovyev, V.V., Korolev, S.V., and Lim, H.A. 1992. A new approach for the classification of functional regions of DNA sequences based on fractal representation. Int. J. Genome Res. 1, 109-128.
-
(1992)
Int. J. Genome Res.
, vol.1
, pp. 109-128
-
-
Solovyev, V.V.1
Korolev, S.V.2
Lim, H.A.3
-
285
-
-
85010111402
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds. Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL), World Scientific, Singapore.
-
Solovyev, V.V., Lim, H.A., Milanesi, L., and Lawrence, C. 1993. Application of fractal representation of genetic texts for recognition of genome functional and coding regions, 609-622. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds. Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL), World Scientific, Singapore.
-
(1993)
Application of fractal representation of genetic texts for recognition of genome functional and coding regions
, pp. 609-622
-
-
Solovyev, V.V.1
Lim, H.A.2
Milanesi, L.3
Lawrence, C.4
-
286
-
-
0028700540
-
-
In Altman, R., Brutlag, D., Karp, P., Lathrop, R., and Searls, D., eds., Proc. 2nd Int. Conf. on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA.
-
Solovyev, V.V., Salamov, A.A., and Lawrence, C.B. 1994. The prediction of human exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames, 354-362. In Altman, R., Brutlag, D., Karp, P., Lathrop, R., and Searls, D., eds., Proc. 2nd Int. Conf. on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA.
-
(1994)
The prediction of human exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames
, pp. 354-362
-
-
Solovyev, V.V.1
Salamov, A.A.2
Lawrence, C.B.3
-
287
-
-
0024728868
-
Application of a degenerate consensus sequence to quantify recognition sites by vertebrate DNA topoisomerase II
-
Spitzner, J.R., and Muller, M.T. 1989. Application of a degenerate consensus sequence to quantify recognition sites by vertebrate DNA topoisomerase II. J. Mol. Recognition 2, 63-74.
-
(1989)
J. Mol. Recognition
, vol.2
, pp. 63-74
-
-
Spitzner, J.R.1
Muller, M.T.2
-
288
-
-
0025056628
-
Eukaryotic topoisomerase II preferentially cleaves alternating purine-pyrimidine repeats
-
Spitzner, J.R., Chung, I.K., and Muller, M.T. 1990. Eukaryotic topoisomerase II preferentially cleaves alternating purine-pyrimidine repeats. Nucleic Acids Res. 18, 1-11.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 1-11
-
-
Spitzner, J.R.1
Chung, I.K.2
Muller, M.T.3
-
289
-
-
0021110069
-
The SOS system of Escherichia coli in the regulation of bacteriophage A development
-
Sprizhitsky, Y.A., and Kopylov, V.M. 1983. The SOS system of Escherichia coli in the regulation of bacteriophage A development. FEBS Lett. 160, 7-10.
-
(1983)
FEBS Lett.
, vol.160
, pp. 7-10
-
-
Sprizhitsky, Y.A.1
Kopylov, V.M.2
-
290
-
-
0018860609
-
A computer program to search for tRNA genes
-
Staden, R. 1980. A computer program to search for tRNA genes. Nucleic Acids Res. 8, 817-825.
-
(1980)
Nucleic Acids Res.
, vol.8
, pp. 817-825
-
-
Staden, R.1
-
291
-
-
0021760026
-
Computer methods to locate signals in nucleic acid sequences
-
Staden, R. 1984a. Computer methods to locate signals in nucleic acid sequences. Nucleic Acids Res. 12, 505-519.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 505-519
-
-
Staden, R.1
-
292
-
-
0021760088
-
Graphic methods to determine the function of nucleic acid sequences
-
Staden, R. 1984b. Graphic methods to determine the function of nucleic acid sequences. Nucleic Acids Res. 12, 521-538.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 521-538
-
-
Staden, R.1
-
293
-
-
0021760028
-
Measurements of the effect that coding for a protein has on a DNA sequence and their use for finding genes
-
Staden, R. 1984c. Measurements of the effect that coding for a protein has on a DNA sequence and their use for finding genes. Nucleic Acids Res. 12, 551-567.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 551-567
-
-
Staden, R.1
-
294
-
-
1842460383
-
-
In Setlow, J.K., and Hollaender, A., eds., Genetic Engineering, Principle and Methods, Plenum Press, New York.
-
Staden, R. 1985. Computer methods to locate genes and signals in nucleic acid sequences, 67-114. In Setlow, J.K., and Hollaender, A., eds., Genetic Engineering, Principle and Methods, vol. 7, Plenum Press, New York.
-
(1985)
Computer methods to locate genes and signals in nucleic acid sequences
, vol.7
, pp. 67-114
-
-
Staden, R.1
-
295
-
-
0023984736
-
Methods to define and locate patterns of motifs in sequences
-
Staden, R. 1988. Methods to define and locate patterns of motifs in sequences. Comput. Appl. Biosci. 4, 53-60.
-
(1988)
Comput. Appl. Biosci.
, vol.4
, pp. 53-60
-
-
Staden, R.1
-
296
-
-
0024385974
-
Methods for discovering novel motifs in nucleic acid sequences
-
Staden, R. 1989. Methods for discovering novel motifs in nucleic acid sequences. Comput. Appl. Biosci. 5, 293-298.
-
(1989)
Comput. Appl. Biosci.
, vol.5
, pp. 293-298
-
-
Staden, R.1
-
297
-
-
0025273345
-
Finding protein coding regions in genomic sequences
-
Staden, R. 1990. Finding protein coding regions in genomic sequences. Methods Enzymol. 183, 163-179.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 163-179
-
-
Staden, R.1
-
298
-
-
0020039567
-
Codon preference and its use in identifying protein coding regions in long DNA sequences
-
Staden, R., and McLachlan, A.D. 1982. Codon preference and its use in identifying protein coding regions in long DNA sequences. Nucleic Acids Res. 10, 141-156.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 141-156
-
-
Staden, R.1
McLachlan, A.D.2
-
299
-
-
0028401927
-
Combined use of sequence similarity and codon bias for coding region identification
-
States, D.J., and Gish, W. 1994. Combined use of sequence similarity and codon bias for coding region identification. J. Comput. Biol. 1, 39-50.
-
(1994)
J. Comput. Biol.
, vol.1
, pp. 39-50
-
-
States, D.J.1
Gish, W.2
-
300
-
-
0027054380
-
Features of spliceosoome evolution and function inferred from an analysis of the information at human splice sites
-
Stephens, R.M., and Schneider, T.D. 1992. Features of spliceosoome evolution and function inferred from an analysis of the information at human splice sites. J. Mol. Biol. 228, 1124-1136.
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 1124-1136
-
-
Stephens, R.M.1
Schneider, T.D.2
-
301
-
-
85010140430
-
-
In Bishop, M.J., and Rawlings, C.J., eds., Nucleic Acid and Protein Sequence Analysis: A Practical Approach, IRL Press, Oxford.
-
Stormo, G.D. 1987. Identifying coding sequences, 359-385. In Bishop, M.J., and Rawlings, C.J., eds., Nucleic Acid and Protein Sequence Analysis: A Practical Approach, IRL Press, Oxford.
-
(1987)
Identifying coding sequences
, pp. 359-385
-
-
Stormo, G.D.1
-
302
-
-
0023678091
-
Computer methods for analyzing sequence recognition of nucleic acids
-
Stormo, G.D. 1988. Computer methods for analyzing sequence recognition of nucleic acids. Annu. Rev. Biophys. Biophys. Chem. 17, 241-263.
-
(1988)
Annu. Rev. Biophys. Biophys. Chem.
, vol.17
, pp. 241-263
-
-
Stormo, G.D.1
-
303
-
-
0000133199
-
Identifying protein-binding sites from unahgned DNA fragments
-
Stormo, G.D., and Hartzel, G. W. III. 1989. Identifying protein-binding sites from unahgned DNA fragments. Proc. Nad. Acad. Sci. USA 86, 1183-1187.
-
(1989)
Proc. Nad. Acad. Sci. USA
, vol.86
, pp. 1183-1187
-
-
Stormo, G.D.1
Hartzel, G.W.2
-
304
-
-
0028685587
-
-
In Altman, R., Brutlag, D., Karp, P., Lathrop, R., and Searls, D. eds., Proc. 2nd Int. Conf. on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA.
-
Stormo, G.D., and Hausslcr, D. 1994. Optimally parsing a sequence into different classes based on multiple types of evidence, 369-375. In Altman, R., Brutlag, D., Karp, P., Lathrop, R., and Searls, D. eds., Proc. 2nd Int. Conf. on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA.
-
(1994)
Optimally parsing a sequence into different classes based on multiple types of evidence
, pp. 369-375
-
-
Stormo, G.D.1
Hausslcr, D.2
-
305
-
-
0020480282
-
Characterization of translational initiation sites in E. coli
-
Stormo, G.D., Schneider, T.D., and Gold, L.M. 1982a. Characterization of translational initiation sites in E. coli. Nucleic Acids Res. 10, 2971-2996.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 2971-2996
-
-
Stormo, G.D.1
Schneider, T.D.2
Gold, L.M.3
-
306
-
-
0020480251
-
Use of the “Perceptron” algorithm to distinguish translational initiation sites in E
-
Stormo, G.D., Schneider, T.D., Gold, L.M., and Ehrenfeucht, A. 1982b. Use of the “Perceptron” algorithm to distinguish translational initiation sites in E. coli Nucleic Acids Res. 10, 2997-3011.
-
(1982)
coli Nucleic Acids Res.
, vol.10
, pp. 2997-3011
-
-
Stormo, G.D.1
Schneider, T.D.2
Gold, L.M.3
Ehrenfeucht, A.4
-
307
-
-
0023057575
-
Quantitative analysis of the relationship between nucleotide sequence and functional activity
-
Stormo, G.D., Schneider, T.D., and Gold, L.M. 1986. Quantitative analysis of the relationship between nucleotide sequence and functional activity. Nucleic Acids Res. 14, 6661-6677.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 6661-6677
-
-
Stormo, G.D.1
Schneider, T.D.2
Gold, L.M.3
-
308
-
-
0022978611
-
Quantitative computer analysis of signal sequence homologies in DNA
-
Studnicka, G.M. 1986. Quantitative computer analysis of signal sequence homologies in DNA. Comput. Appl. Biosci. 2, 269-275.
-
(1986)
Comput. Appl. Biosci.
, vol.2
, pp. 269-275
-
-
Studnicka, G.M.1
-
309
-
-
0023608898
-
Nucleotide sequence homologies in control regions of prokaryotic genomes
-
Studnicka, G.M. 1987. Nucleotide sequence homologies in control regions of prokaryotic genomes. Gene 58, 45-57.
-
(1987)
Gene
, vol.58
, pp. 45-57
-
-
Studnicka, G.M.1
-
310
-
-
0023880647
-
Escherichia coli promoter -10 and -35 homologies correlate with binding and isomerization kinetics
-
Studnicka, G.M. 1988. Escherichia coli promoter -10 and -35 homologies correlate with binding and isomerization kinetics. Biochemical J. 252, 825-831.
-
(1988)
Biochemical J.
, vol.252
, pp. 825-831
-
-
Studnicka, G.M.1
-
311
-
-
0026577362
-
The C. elegans genome sequencing project: A beginning
-
Sulston, J. et al. 1992. The C. elegans genome sequencing project: A beginning. Nature 356, 37-41.
-
(1992)
Nature
, vol.356
, pp. 37-41
-
-
Sulston, J.1
-
312
-
-
0022429792
-
Correlation between the rate of productive transcription initiation and the strand-melting property of Escherichia coli promoters
-
Tachibana, H. 1985. Correlation between the rate of productive transcription initiation and the strand-melting property of Escherichia coli promoters. Nucleic Acids Res. 13, 9031-9042.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 9031-9042
-
-
Tachibana, H.1
-
313
-
-
85010122111
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL), World Scientific, Singapore.
-
Takagi, T. 1993. ODS: Overlapping oligonucleotide database with deductive engine engine for signal sequence search, 263-272. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL), World Scientific, Singapore.
-
(1993)
ODS: Overlapping oligonucleotide database with deductive engine engine for signal sequence search
, pp. 263-272
-
-
Takagi, T.1
-
314
-
-
0027501814
-
Induction of cleavage in topoisomerase I c-DNA by topoisomerase I enzymes from calf thymus and wheat germ in the presence and absence of camptothecin
-
Tanizawa, A., Kohn, K.W., and Pommier, Y. 1993. Induction of cleavage in topoisomerase I c-DNA by topoisomerase I enzymes from calf thymus and wheat germ in the presence and absence of camptothecin. Nucleic Acids Res. 21, 5157-5166.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5157-5166
-
-
Tanizawa, A.1
Kohn, K.W.2
Pommier, Y.3
-
315
-
-
0022578582
-
Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics
-
Tramontane, A., and Macchiato, M.F. 1986. Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics. Nucleic Acids Res. 14, 127-135.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 127-135
-
-
Tramontane, A.1
Macchiato, M.F.2
-
316
-
-
9544221456
-
-
In Eckstein, F., and Lilley, D.M.J., eds., Nucleic Acids and Molecular Biology,, Springer-Verlag.
-
Travers, A.A. 1988. Protein-induced DNA bending, 136-148. In Eckstein, F., and Lilley, D.M.J., eds., Nucleic Acids and Molecular Biology, vol. 2., Springer-Verlag.
-
(1988)
Protein-induced DNA bending
, vol.2
, pp. 136-148
-
-
Travers, A.A.1
-
317
-
-
0020283725
-
Sequence-dependent variations of B-DNA structure and protein-DNA recognition
-
Trifonov, E.N. 1982. Sequence-dependent variations of B-DNA structure and protein-DNA recognition. Cold Spring Harbor Symp. Quant. Biol. 47. 271-278.
-
(1982)
Cold Spring Harbor Symp. Quant. Biol.
, vol.47
, pp. 271-278
-
-
Trifonov, E.N.1
-
318
-
-
0023194889
-
Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16S rRNA nucleotide sequences
-
Trifonov, E.N. 1987. Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16S rRNA nucleotide sequences. J. Mol. Biol. 194, 643-652.
-
(1987)
J. Mol. Biol.
, vol.194
, pp. 643-652
-
-
Trifonov, E.N.1
-
319
-
-
0023684086
-
Codes of nucleotide sequences
-
Trifonov, E.N. 1988. Codes of nucleotide sequences. Math. Biosci. 90, 507-517.
-
(1988)
Math. Biosci.
, vol.90
, pp. 507-517
-
-
Trifonov, E.N.1
-
320
-
-
0024334889
-
The multiple codes of nucleotide sequences
-
Trifonov, E.N. 1989. The multiple codes of nucleotide sequences. Bull. Math. Biol. 51, 417-432.
-
(1989)
Bull. Math. Biol.
, vol.51
, pp. 417-432
-
-
Trifonov, E.N.1
-
321
-
-
0002312194
-
Gene splicing: Spatial separation of overlapping messages
-
Trifonov, E.N. 1993. Gene splicing: Spatial separation of overlapping messages. Comput. Chem. 17, 27-31.
-
(1993)
Comput. Chem.
, vol.17
, pp. 27-31
-
-
Trifonov, E.N.1
-
322
-
-
0023664548
-
A common structural feature in promoter sequences of E
-
Tung, C.-P., and Harvey, S.C. 1987. A common structural feature in promoter sequences of E. coli. Nucleic Acids Res. 15, 4973-4985.
-
(1987)
coli. Nucleic Acids Res.
, vol.15
, pp. 4973-4985
-
-
Tung, C.-P.1
Harvey, S.C.2
-
323
-
-
0025422385
-
Specific nuclear DNA-binding proteins
-
Turpaev, K.T., and Vassetsky, Y.S. 1990. Specific nuclear DNA-binding proteins. Genetika 26, 804-816.
-
(1990)
Genetika
, vol.26
, pp. 804-816
-
-
Turpaev, K.T.1
Vassetsky, Y.S.2
-
324
-
-
0026351408
-
Locating protein coding regions in human DNA sequences by a multiple sensor-neural network approach Proc
-
Uberbacher, E., and Mural, R. 1991. Locating protein coding regions in human DNA sequences by a multiple sensor-neural network approach Proc. Natl. Acad. Sci. USA 88, 11261-11265.
-
(1991)
Natl. Acad. Sci. USA
, vol.88
, pp. 11261-11265
-
-
Uberbacher, E.1
Mural, R.2
-
325
-
-
85010140416
-
-
In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July, St. Petersburg, FL), World Scientific, Singapore.
-
Uberbacher, E.C., Einstein, J.R., Guan, X., and Mural, R.J. 1993. Gene recognition and assembly in the GRAIL system: progress and challenges, 465-476. In Lim, H.A., Fickett, J.W., Cantor, C.R., and Robbins, R.J., eds., Proc. 2nd Int. Conf. on Bioinformatics, Supercomputing and Complex Genome Analysis (July 1992, St. Petersburg, FL), World Scientific, Singapore.
-
(1993)
Gene recognition and assembly in the GRAIL system: progress and challenges
, pp. 465-476
-
-
Uberbacher, E.C.1
Einstein, J.R.2
Guan, X.3
Mural, R.J.4
-
326
-
-
0027537639
-
Rapid motif scoring with match weight sets
-
Venezia, D., and O'Hara, P.J. 1993. Rapid motif scoring with match weight sets. Comput. Appl. Biosci. 9, 65-69.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 65-69
-
-
Venezia, D.1
O'Hara, P.J.2
-
327
-
-
0040260756
-
-
In Waterman, M.S., ed., Mathematical Methods for DNA Sequences, CRC Press, Boca Raton, FL.
-
Waterman, M.S. 1989a. Sequence alignments, 53-92. In Waterman, M.S., ed., Mathematical Methods for DNA Sequences, CRC Press, Boca Raton, FL.
-
(1989)
Sequence alignments
, pp. 53-92
-
-
Waterman, M.S.1
-
328
-
-
85010171151
-
-
In Waterman, M.S., ed., Mathematical Methods for DNA Sequences, CRC Press, Boca Raton, FL.
-
Waterman, M.S. 1989b. Consensus patterns in sequences, 93-115. In Waterman, M.S., ed., Mathematical Methods for DNA Sequences, CRC Press, Boca Raton, FL.
-
(1989)
Consensus patterns in sequences
, pp. 93-115
-
-
Waterman, M.S.1
-
329
-
-
11944249774
-
A survey of expressed genes in Caenorhabditis elegans
-
Waterston, R. et al. 1992. A survey of expressed genes in Caenorhabditis elegans. Nature Genetics 1, 114-123.
-
(1992)
Nature Genetics
, vol.1
, pp. 114-123
-
-
Waterston, R.1
-
330
-
-
0027240486
-
Interpreting sequence motifs
-
Watson, C.J. 1993. Interpreting sequence motifs. Trends Genet. 9, 298.
-
(1993)
Trends Genet.
, vol.9
, pp. 298
-
-
Watson, C.J.1
-
331
-
-
0026915610
-
Information content and dinucleotide composition of plant intron sequences vary with evolutionary origin
-
White, O., Soderlund, C., Shanmugan, P., and Fields, C. 1992. Information content and dinucleotide composition of plant intron sequences vary with evolutionary origin. Plant Mol. Biol. 19, 1057-1063.
-
(1992)
Plant Mol. Biol.
, vol.19
, pp. 1057-1063
-
-
White, O.1
Soderlund, C.2
Shanmugan, P.3
Fields, C.4
-
332
-
-
0027181380
-
A quality contron algorithm for DNA sequencing projects
-
White, O., Dunning, T., Sutton, G., Adams, M., Venter, J.C., and Fields, C. 1993. A quality contron algorithm for DNA sequencing projects. Nucleic Acids Res. 21, 3829-3838.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3829-3838
-
-
White, O.1
Dunning, T.2
Sutton, G.3
Adams, M.4
Venter, J.C.5
Fields, C.6
-
333
-
-
0028295681
-
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans
-
Wilson, R. et al. 1994. 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature 368, 32-38.
-
(1994)
Nature
, vol.368
, pp. 32-38
-
-
Wilson, R.1
-
334
-
-
0024296557
-
Compilation of transcription regulation proteins
-
Wingender, E. 1988. Compilation of transcription regulation proteins. Nucleic Acids Res. 16, 1879-1902.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 1879-1902
-
-
Wingender, E.1
-
335
-
-
0025158520
-
Transcription regulating proteins and their recognition sequences
-
Wingender, E. 1990. Transcription regulating proteins and their recognition sequences. CRC Crit. Rev, Eukaryotic Gene Expression 1, 11-48.
-
(1990)
CRC Crit. Rev, Eukaryotic Gene Expression
, vol.1
, pp. 11-48
-
-
Wingender, E.1
-
336
-
-
0002465138
-
Regulatory DNA sequences: predictability of their function
-
Wingender, E., Heinemeyer, T., and Lincoln, D. 1991. Regulatory DNA sequences: predictability of their function. Adv. Mol. Genet. 4, 95-108.
-
(1991)
Adv. Mol. Genet.
, vol.4
, pp. 95-108
-
-
Wingender, E.1
Heinemeyer, T.2
Lincoln, D.3
-
337
-
-
0025322352
-
Searching for tRNA genes in DNA sequences-an IBM microcomputer program
-
Wozniak, P., and Makalowski, W. 1990. Searching for tRNA genes in DNA sequences-an IBM microcomputer program. Comput. Appl. Biosci. 6, 49-50.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 49-50
-
-
Wozniak, P.1
Makalowski, W.2
-
338
-
-
0025318864
-
The “effective number of codons” used in a gene
-
Wright, F. 1990. The “effective number of codons” used in a gene. Gene 87, 23-29.
-
(1990)
Gene
, vol.87
, pp. 23-29
-
-
Wright, F.1
-
339
-
-
0000862346
-
Classification neural networks for rapid sequence annotation and automated database organization
-
Wu, C. 1993. Classification neural networks for rapid sequence annotation and automated database organization. Computers Chem. 17, 219-227.
-
(1993)
Computers Chem.
, vol.17
, pp. 219-227
-
-
Wu, C.1
-
340
-
-
0027166233
-
Coincident indices of exons and introns
-
Xu, J., Chen, R., Ling, L., Shen, R., and Sun, J. 1993. Coincident indices of exons and introns. Comput. Biol. Med. 23, 333-343.
-
(1993)
Comput. Biol. Med.
, vol.23
, pp. 333-343
-
-
Xu, J.1
Chen, R.2
Ling, L.3
Shen, R.4
Sun, J.5
-
341
-
-
0028685492
-
-
In Altman, R., Brutlag, D., Karp, P., Lathrop, R., and Searls, D., eds., Proc. 2nd Int. Conf. on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA.
-
Xu, Y., Einstein, J.R., Mural, R.J., Shah, M., and Uberbacher, E.C. 1994. An improved system for exon recognition and gene modeling in human DNA sequences, 376-383. In Altman, R., Brutlag, D., Karp, P., Lathrop, R., and Searls, D., eds., Proc. 2nd Int. Conf. on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA.
-
(1994)
An improved system for exon recognition and gene modeling in human DNA sequences
, pp. 376-383
-
-
Xu, Y.1
Einstein, J.R.2
Mural, R.J.3
Shah, M.4
Uberbacher, E.C.5
-
342
-
-
0027377256
-
A weight array method for splicing signal analysis
-
Zhang, M.Q., and Marr, T.G. 1993. A weight array method for splicing signal analysis. Comput. Appl. Biosci. 9, 499-509.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 499-509
-
-
Zhang, M.Q.1
Marr, T.G.2
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