Dna profiling techniques for plant variety identification

Australian Journal of Experimental Agriculture

Volumn 35, Issue 6, 1995, Pages 807-819

  Morell, M K ^a,b   Peakall, R ^a,c   Appels, R ^a,d   Preston, L R ^a   Lloyd, H L ^e  

^a Cooperative Research Centre for Plant Science ^*  (Australia)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^c AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^d CSIRO PLANT INDUSTRY   (Australia)

^e Department of Agriculture Fisheries and Forestry Australia   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0029176959     PISSN: 08161089     EISSN: None     Source Type: Journal    
DOI: 10.1071/EA9950807     Document Type: Article

References (71)

1. Adams, R. R, Demeke, T., and Abulfaith, H. A. (1993). RAPD DNA fingerprints and terpenoids: Clues to past migrations of Juniperus in Arabia and east Africa. Theoretical and Applied Genetics 87, 22-6.
2. Akkaya, M. S., Bhagwat, A. A., and Cregan, P. B. (1992). Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132, 1131-9.
3. Anon. (1994a). The use of molecular techniques for the identification of tomato cultivars. UPOV Document BMT/2/2.
4. Anon. (1994b). Biochemical and molecular techniques and DNA-profiling: Preliminary assessments and comparison of methods as applied to soybeans Glycine max (L.) Merr. UPOV Document BMT/2/6.
5. Antonius, K., and Nybom, H. (1994). DNA fingerprinting reveals significant amounts of genetic variation in a wild raspberry Rubus idaeus population. Molecular Ecology 3, 177-80.
6. Arnheim, N., White, T., and Rainey, W. E. (1994). Application of PCR: Organismal and population biology. Bioscience 40, 174-82.
7. Ashari, S., Aspinall, D., and Sedgley, M. (1989). Identification and investigation of relationships of mandarin types using isozyme analysis. Scientia Horticulturae 40, 305-15.
8. Bassam, B. J., Caetano-Anolles, G., and Gresshoff, P. M. (1991). Fast and sensitive silver staining of DNA in Polyacrylamide gels. Analytical Biochemistry 196, 80-3.
9. Beckmann, J. S., and Soller, M. (1990). Towards a unified approach to the genetic mapping of eukaryotes based on sequence-tagged microsatellite sites. Bio/Technology 8, 930-2.
10. Beyermann, B., Nurnberg, P., Weihe, A., Meixner, M., Epplen, J. T., and Borner, T. (1992). Fingerprinting plant genomes with oligonucleotide probes specific for simple repetitive DNA sequences. Theoretical and Applied Genetics 83, 691-4.
11. Brunei, D. (1994). A microsatellite marker in Helianthus annuus L. Plant Molecular Biology 24, 397-400.
12. Caetano-Anolles, G., Bassam, B. J., and Gresshoff, P. M. (1991). DNA Amplification fingerprinting: A strategy for genome analysis. Plant Molecular Biology Reporter 9, 294-307.
13. Cregan, P. B. (1992). Simple sequence repeat DNA length polymorphisms. Probe 2, 18-22.
14. Demeke, T., Adams, R. P., and Chibbar, R. (1992). Potential taxonomic use of random amplified polymorphic DNA (RAPD): A case study in Brassica. Theoretical and Applied Genetics 84, 990-4.
15. Dweikat, I., Mackenzie, S., Levy, M., and Ohm, H. (1993). Pedigree assessment using RAPD-DGGE in cereal crop species. Theoretical and Applied Genetics 85, 497-505.
16. Ellsworth, D. L., Rittenhouse, K. D., and Honeycutt, R. L. (1993). Artifactual variation in randomly amplified polymorphic DNA banding patterns. BioTechniques 14, 214-17.
17. Excoffier, L., Smouse, P. E., and Quattro, J. M. (1992). Analysis of molecular variance inferred from metric distances among DNA halotypes: Application to human mitochondrial DNA restriction sites. Genetics 131, 479-91.
18. Francisco-Ortega, J., Newbury, H. J., and Ford-Lloyd, B. V. (1993). Numerical analyses of RAPD data highlight the origin of cultivated tagasaste (Chamaecytisus proliferus ssp. palmensis) in the Canary Islands. Theoretical and Applied Genetics 87, 264-70.
19. Goodfellow, P. N. (1993). Viewpoint: Microsatellites and the new genetic maps. Current Biology 3, 149-51.
20. Grist, S. A., Firgaira, F. A., and Morley, A. A. (1993). Dinucleotide repeat polymorphisms isolated by the polymerase chain reaction. BioTechniques 15, 304-9.
21. 1hybrids of corn. Theoretical and Applied Genetics 85, 961-8.
22. Hillis, D. M., Larson, A., Davis, S. K., and Zimmer, E. A. (1990). DNA isolation from plants, fungi, and algae. In ‘Molecular Systematics’. (Eds D. M. Hillis and C. Moritz.) pp. 340-1. (Sinauer Associates, Inc.: Sunderland, MA, USA.)
23. Hu, J., and Quiros, C. F (1991). Identification of broccoli and cauliflower cultivars with RAPD markers. Plant Cell Reports 10, 505-11.
24. Huff, D. R., Peakall, R., and Smouse, P. E. (1992). RAPD variation within and among natural populations of outcrossing buffalograss. Theoretical and Applied Genetics 86, 927-34.
25. Karagyozov, L., Kalcheva, I. D., and Chapman, V. M. (1993). Construction of random small-insert genomic libraries highly enriched for simple sequence repeats. Nucleic Acids Research 21, 3911-2.
26. Kresovich, S., Williams, J. G. K., McFerson, J. R., Routman, E. J., and Schaal, B. A. (1992). Characterization of genetic identities and relationships of Brassica oleracea L. via a random amplified polymorphic DNA assay. Theoretical and Applied Genetics 85, 190-6.
27. Lagercrantz, U., Ellegren, H., and Andersson, L. (1993). The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Research 21, 1111-15.
28. Lallemand, J. (1994). Molecular markers in maize. UPOV Document BMT/2/4.
29. Lloyd, H. L., Appels, R., Preston, L. R., Morell, M., Buller, C. D. S., and Armitage, P. J. (1992). Determination of distinctness, uniformity and stability of varieties using DNA profiling techniques. UPOV Document TC/28/4.
30. Messmer, M., Melchinger, A., Lee, M., Woodman, W., Lee, E., and Lamkey, K. (1991). Genetic diversity among progenitors and elite lines from the Iowa Stiff Stalk Synthetic (BSSS) maize population: Comparison of allozyme and RFLP data. Theoretical and Applied Genetics 83, 97-107.
31. Michelmore, R. W., Paran, I., and Kesseli, R. V. (1991). Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proceedings of the National Academy of Science USA 88, 9828-32.
32. Morell, M., Peakall, R., Appels, R., Preston, L. R., Buller, C. D. S., Thomas, M. R., Scott, N. S., Kijas, J. M. H., Fowler, J. C. S., Lloyd, H. L. (1994). The application of DNA profiling to the determination of distinctness between varieties in Citrus and implications for varietal identification in other plant species. UPOV Document BMT/2/3.
33. Morgante, M., and Olivieri, A. M. (1993). PCR-amplified microsatellites as markers in plant genetics. Plant Journal 3, 175-82.
34. Nei, M. (1972). Genetic distance between populations. American Naturalist 106, 283-392.
35. Nei, M. (1977). F-statistics and the analysis of gene diversity in subdivided populations. Annals of Human Genetics 41, 225-33.
36. Nei, M., and Li, W.-H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Science USA 76, 5269-73.
37. Neuhaus, D., Kuhl, H., Kohl, J. G., Dorfel, P., and Borner, T. (1993). Investigation on the genetic diversity of Phragmites strands using genetic fingerprinting. Aquatic Botany 45, 357-64.
38. Newbury, H. J., and Ford-Lloyd, B. V. (1993). The use of RAPD for assessing variation in plants. Plant Growth Regulation 12, 43-51.
39. Nybom, H., Rogstad, S. H., and Schaal, B. A. (1990). Genetic variation detected by use of the M13 ‘DNA fingerprint’ probe in Malus, Prunus, and Rubus (Rosaceae). Theoretical and Applied Genetics 79, 153-6.
40. Olson, M., Hood, L., Cantor, D., and Botstein, D. (1989). A common language for physical mapping of the human genome. Science 245, 1434-5.
41. Omura, M., Hidaka, T., Nesumi, H., Yoshida, T., and Nakamura, I. (1993). PCR Markers for citrus identification and mapping. In ‘Techniques on Gene Diagnosis and Breeding in Fruit Trees’. (Eds T. Hayashi and et al.) pp. 66-73.
42. Peakall, R., Smouse, P. E., and Huff, D. R. (1994). Evolutionary implications of allozyme and RAPD variation. Molecular Ecology (in press).
43. Penner, G. A., Bush, A., Wise, R., Kim, W., Domier, L., Kasha, K., Laroche, A., Scoles, G., Motnar, S. J., Fedak, G. (1993). Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Methods and Applications 2, 341-53.
44. Poulsen, G. B., Kahl, G., and Weising, K. (1993). Abundance and polymorphism of simple repetitive DNA sequences in Brassica napus L. Theoretical and Applied Genetics 85, 994-1000.
45. Preston, L. R., Appels, R., Lee, L. S., and Morell, M. K. (1993). Differentiation of Mandarin vaieties by DNA profiling techniques. In ‘Focused Plant Improvement. Towards Responsible and Sustainable Agriculture. Proceedings Tenth Australian Plant Breeding Conference. April 1993’. Vol. 2. (Eds B. C. Imrie and J. B. Hacker.) pp. 231-2. (Organising Committee, Australian Convention and Travel Service: Canberra.)
46. Rafalski, J. A., Hanafey, M. K., Tingey, S. V., and Williams, J. G. K. (1993). Technology for molecular breeding: RAPD markers, microsatellites and machines. In ‘Focussed Plant Improvement Tenth Australian Plant Breeding Conference, April 1993’. Vol. 1. (Eds B. C. Imrie and J. B. Hacker.) pp. 229-32. (Organising Committee, Australian Convention and Travel Service: Canberra.)
47. Rafalski, J. A., and Tingey, S. V. (1994). Genetic diagnostics in plant breeding: RAPDs, microsatellites and machines. Trends in Genetics 9, 275-80.
48. Ragot, M., and Hoisinton, D. A. (1993). Molecular markers for plant breeding: Comparisons of RFLP and RAPD genotyping costs. Theoretical and Applied Genetics 86, 974-85.
49. Rongwen, J., Akkaya, M. S., Bhagwat, A. A., Lavi, U., and Cregan, P. B. (1994). The use of microsatellite DNA markers for soybean genotype identification. Theoretical and Applied Genetics 80, 43-8.
50. Russell, J., Hosein, F., Johnson, E., Waugh, R., and Powell, W. (1993). Genetic differentiation of cocoa (Theobroma cacao L.) populations revealed by RAPD analysis. Molecular Ecology 2, 89-97.
51. Saiki, R. K., Scharf, S., Faloona, F., Mullis, K. B., Horn, G. T., Erlich, H. A., Arnheim, N. (1985). Enzymatic amplification of β-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230, 1350-4.
52. Senior, M. L., and Heun, M. (1993). Mapping maize microsatellites and polymerase chain confirmation of the targeted repeats using a CT primer. Genome 36, 884-9.
53. Stiles, J. I., Lemme, C, Sondur, S., Morshidi, M. B., and Manshardt, R. (1993). Using randomly amplified polymorphic DNA for evaluating genetic relationships among papaya cultivars. Theoretical and Applied Genetics 85, 697-701.
54. Tautz, D. (1989). Hypervariability of simple sequences as a general source for polymorphic markers. Nucleic Acids Research 11, 6463-71.
55. Taylor, G. R., Haward, S., Noble, J. S., and Murday, V. (1992). Isolation and sequencing of CA/GT repeat microsatellites from chromosomal libraries without subcloning. Analytical Biochemistry 200, 125-9.
56. Thomas, M. R., and Scott, N. S. (1993). Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theoretical and Applied Genetics 70, 1-6.
57. Tingey, S. V, and Del Tufo, J. P. (1993). Genetic analysis with random amplified polymorphic DNA markers. Plant Physiology 101, 349-52.
58. Tingey, S. V, Rafalski, J. A., and Williams, J. G. K. (1992). Genetic analysis with RAPD markers. In ‘Applications of RAPD Technology to Plant Breeding’. (Ed M. Neff.) pp. 3-8. (American Society for Horticultural Science: Minneapolis, MN, USA.)
59. Wang, Z., Weber, J. L., Zhong, G., and Tanksley, S. D. (1994). Survey of plant short tandem DNA repeats. Theoretical and Applied Genetics 88, 1-6.
60. Weber, J. L. (1990). Informativeness of human (dC-dA)n. (dG-dT)n polymorphisms. Genomics 7, 524-30.
61. Weber, J. L., and May, P. E. (1989). Abundant class of human DNA polymorphism which can be typed using the polymerase chain reaction. American Journal of Human Genetics 44, 388-96.
62. Weeden, N. F., Timmerman, G. M., Hemmat, M., Kneen, B. E., and Lodhi, M. A. (1992). Inheritance and reliability of RAPD markers. In ‘Applications of RAPD Technology to Plant Breeding’. (Ed M. Neff.) pp. 12-17. (American Society for Horticultural Science: Minneapolis, MN, USA.)
63. Welsh, J., and McClelland, M. (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research 18, 7213-8.
64. Wilde, J., Waugh, R., and Powell, W. (1992). Genetic fingerprinting of Theobroma clones using randomly amplified polymorphic DNA markers. Theoretical and Applied Genetics 83, 871-7.
65. Wilkie, S., Isaac, P. G., and Slater, R. J. (1993). Random amplified polymorphic DNA (RAPD) markers for genetic analysis in Allium. Theoretical and Applied Genetics 86, 497-504.
66. Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A., and Tingey, S. V. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18, 6531-5.
67. Wright, S. (1951). The genetical structure of populations. Annals of Eugenics 1, 323-34.
68. Wu, K., and Jones, R., Dannebe Scolnik, P. A. (1994). Detection of microsatellite polymorphisms without cloning. Nucleic Acids Research 22, 3257-8.
69. Yang, X., and Quiros, C. (1993). Identification and classification of celery cultivars with RAPD markers. Theoretical and Applied Genetics 86, 205-12.
70. Zhang, Q., Saghai-Maroof, M. A., and Kleinhofs, A. (1993). Comparative diversity analysis of RFLPs and isozymes within and among populations of Hordeum vulgare ssp. spontaneum. Genetics 134, 909-16.
71. Zietkiewicz, E., Raflaski, A., and Labuda, D. (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20, 176-83.