Maize as a model of higher plant mitochondrial genome plasticity

Plant Science

Volumn 112, Issue 1, 1995, Pages 11-32

  Fauron, Christiane M R ^a   Moore, Barry ^a   Casper, Mark ^a  

^a UNIVERSITY OF UTAH   (United States)

Author keywords

Higher plants; Maize; Mitochondrial genome organization; Recombination; Repeated sequences

Indexed keywords

ZEA MAYS;

EID: 0029176379     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/0168-9452(95)04243-N     Document Type: Review

References (159)

1. Heterogeneous population of mitochondrial DNA molecules in higher plants
2. Tripartite structure of the Brassica campestris mitochondrial genome
3. The physical map and organization of the mitochondrial genome from the fertile cytoplasm of maize
4. Structure and function of the higher plant mitochondrial genome
5. The mitochondrial genome of plants
6. Genetic plasticity and its consequences perspectives on gene organization and expression in plant mitochondria
7. Organization and post-transcriptional modification of mitochondrial genes in higher plants
8. Mitochondrial genome organization
9. The maize mitochondrial genome: dynamic, yet functional
10. RNA editing in plant mitochondria
11. RNA editing gives a new meaning to the genetic information in mitochondria and chloroplasts
12. RNA editing in plant mitochondria and chloroplasts
13. The plant mitochondrial genome: physical structure, information content, RNA editing, and gene migration to the nucleus
14. The mitochondrial genome and its expression
15. In vitro analysis of plant mitochondrial transcription
16. Mitochondrial transcription initiation promoter structures and RNA polymerases
17. The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae)
18. Cytoplasmic pollen sterility in corn
19. Classification of male sterile cytoplasms in maize (Zea mays L.)
20. Restriction endonuclease analysis of mitochondrial DNA from normal and Texas cytoplasmic male-sterile maize
21. Heterogeneity of maize cytoplasmic genomes among male-sterile cytoplasms
22. Comparison of the restriction endonuclease digestion patterns of mitochondrial DNA from normal and male sterile cytoplasms of Zea mays L
23. A second type of normal maize mitochondrial genome: an evolutionary link
24. The BamHI/XhoI, SmaI restriction enzyme maps of the normal maize mitochondrial genotype B37
25. Mitochondrial genome organization of the maize cytoplasmic male sterile type T
26. The maize mitochondrial genome of the normal type and the male sterile type T have very different organization
27. Localization and organization of tRNA genes on the mitochondrial genomes of fertile and male sterile lines of maize
28. Transfer RNAs and transfer RNA genes in plants
29. A gene involved in the biogenesis of cytochromes is co-transcribed with a ribosomal protein gene in wheat mitochondria
30. A plant mitochondrial gene encodes a protein involved in cytochrome c biogenesis
31. Complete nucleotide sequence of the mitochondrial DNA from a liverwort Marchantia polymorpha
32. A gene proposed to encode a transmembrane domain of an ABC transporter is expressed in wheat mitochondria
33. A sequence encoding a maturase-related protein in a group II intron of a plant mitochondrial nadl gene
34. Maize mitochondrial DNA: the nadl gene-mat-r gene complex, a maturase-related pseudogene linked to a nad2 exon, and nad gene intron relationships
35. RNA editing of mat-r transcripts in maize and soybean increases similarity of the encoded protein to fungal and bryophite group II intron maturases: evidence that mat-r encodes a functional protein
36. Novel recombinations in the maize mitochondrial genome produce a unique transcriptional unit in the Texas male-sterile cytoplasm
37. The plant mitochondrial open reading frame orf221 encodes a membrane-bound protein
38. Expression of the wheat mitochondrial nad3-rps12 transcription unit: correlation between editing and mRNA maturation
39. The NADH dehydrogenase subunit 7 gene is interrupted by four group II introns in the wheat mitochondrial genome
40. The nad4 gene of maize mitochondria is highly conserved
41. The NADH-dehydrogenase subunit 5 gene in Oenothera mitochondria contains two introns and is co-transcribed with the 5S rRNA gene
42. Trans-splicing in Oenothera mitochondria: nadl mRNA are editing in exon and trans-splicing group II intron sequences
43. Multiple trans-splicing events are required to produce a mature nadl transcript in a plant mitochondrion
44. The wheat mitochondrial gene for subunit I of the NADH dehydrogenase complex: a trans-splicing model for this gene-in-pieces
45. Trans splicing integrates an exon of 22 nucleotides into the nad5 mRNA in higher plant mitochondria
46. A trans-splicing model for the expression of the tripartite nad5 gene in wheat and maize mitochondria
47. RNA editing of the transcript coding for subunit 4 of NADH dehydrogenase in wheat mitochondria: uneven distribution of the editing sites among the four exons
48. RNA editing in intron sequences may be required for trans-splicing of nad2 transcripts in Oenothera mitochondria
49. Variable intron content of NADH dehydrogenase subunit 4 gene of plant mitochondria
50. The watermelon mitochondrial URF-1 gene: evidence for a complex structure
51. A fused mitochondrial gene associated with cytoplasmic male sterility is developmentally regulated
52. Chimeric mitochondrial genes expressed in the C male-sterile cytoplasm of maize
53. Nucleotide sequence of ATPase subunit 6 gene of maize mitochondria
54. A mitochondrial protein associated with cytoplasmic male sterility in the T cytoplasm of maize
55. urf13-T of T cytoplasm maize mitochondria encodes a 13 kD polypeptide
56. Thoughts on cytoplasmic male sterility in cmsT maize
57. A 13-kilodalton maize mitochondrial protein in E. coli confers sensitivity to Bipolaris maydis toxin
58. URF13, a maize mitochondrial pore-protein, is oligomeric and has a mixed orientation in Escherichia coli
59. Tissue-specific protein expression in plant mitochondria
60. Sequencing, processing, and localization of the petunia CMS-associated mitochondrial protein
61. Mitochondrial genome rearrangement leads to extension and relocation of the cytochrome c oxidase subunit I gene in sorghum
62. A chimeric gene containing the 5 portion of atp6 is associated with cytoplasmic male-sterility in rice
63. Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice
64. A unique sequence located downstream from the rice mitochondrial atp6 may cause male sterility
65. Characterization of expression of a mitochondrial gene region associated with the Brassica ‘Polima’ CMS: developmental influences
66. Ogura cytoplasmic male-sterility (CMS)-associated orf138 is translated into a mitochondrial membrane polypeptide in male-sterile Brassica hybrids
67. RNA editing of transcripts of a chimeric mitochondrial gene associated with cytoplasmic malesterility in Brassica
68. The atp6 coding region has been disrupted and a novel reading frame generated in the mitochondrial genome of cytoplasmic male-sterile radish
69. Characterization of the radish mitochondrial orfB locus: possible relationship with male sterility in Ogura radish
70. Nuclear restoration of cytoplasmic male sterility in sunflower is associated with the tissue-specific regulation of a novel mitochondrial gene
71. Genomic organization and sequence analysis of the cytochrome oxidase subunit II gene from normal and male-sterile micochondria in sugar beet
72. A chimeric gene (orf256) is expressed as protein only in cytoplasmic male-sterile lines of wheat
73. Mitochondrial and chloroplast genomes of maize have a 12-kilobase DNA sequence in common
74. Maize mitochondrial DNA contains a sequence homologous to the ribulose-1,5-biphosphate car☐ylase large subunit gene of chloroplast DNA
75. pro gene in wheat mitochondrial and chloroplast genomes
76. Localization and nucleotide sequence of two tRNA genes and a tRNA pseudo-gene in the maize mitochondrial genome: evidence for the transcription of a chloroplast gene in mitochondria
77. Rice mitochondrial genome contains a rearranged chloroplast gene cluster
78. Sequence and transcriptional analysis of a chloroplast insert in the mitochondrial genome of Zea mays
79. Met in maize mitochondria
80. Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
81. Location, identity, amount and serial entry of chloroplast DNA sequences on Crucifer mitochondrial DNAs
82. Evolutionary variations in DNA sequence transferred from cholorplast genomes to mitochondrial genomes in Gramineae
83. The maize NCS2 abnormal growth mutant has a chimeric nad4–nad7 mitochondrial gene and is associated with reduced complex I function
84. Intron loss from the NADH dehydrogenase subunit 4 gene of lettuce mitochondrial DNA: evidence for homologous recombination of a cDNA intermediate
85. The Zea mays mitochondrial gene coding cytochrome oxidase subunit II has an intervening sequence and does not contain TGA codons
86. The wheat cytochrome oxidase subunit II gene has an intron insert and three radical amino acid changes relative to maize
87. Cytochrome oxidase subunit II gene of rice has an insertion sequence within the intron
88. Cytochrome oxidase subunit II gene in mitochondria of Oenothera has no intron
89. The structure of the cytochrome oxidase subunit II gene and its uses as a new character in construction of the phylogenetic tree of Angiospermae
90. Pea cytochrome oxidase subunit II gene has no intron and generates two mRNA transcripts with different 5′-termini
91. Cytochrome oxidase subunit II gene from carrot contains an intron
92. The coxII gene in carrot mitochondria contains two introns
93. Cytochrome oxidase subunit II gene is adjacent to an initiator methionine tRNA gene in soybean mitochondrial DNA
94. Cytochrome oxidase subunit II sequences in Petunia mitochondria: two intron-containing genes and an intron-less pseudogene associated with cytoplasmic male sterility
95. The cytochrome oxidase II gene in mitochondria of the sugar-beet Beta vulgaris L
96. Splicing of the Petunia cytochrome oxidase subunit II intron
97. Cytochrome oxidase subunit II mRNAs in Oenothera mitochondria are edited at 24 sites
98. Transcription of the Petunia mitochondrial CMS-associated Pcf locus in male sterile and fertility-restored lines
99. The mitochondrial OxII intron has been lost in two different lineages of dicots and altered in others
100. Investigations of the CoxII intron structure in the mitochondrial genomes of angiosperms
101. The genes coding for subunit 3 of NADH dehydrogenase and maize mitochondrial protein S12 are present in the wheat and maize mitochondrial genomes and are co-transcribed
102. The tobacco mitochondrial ATPase subunit 9 gene is closely linked to an open reading frame for a ribosomal protein
103. Species-specific RNA editing patterns in the mitochondrial rps13 transcripts of Oenothera and Daucus
104. Ribosomal protein S14 transcripts are edited in Oenothera mitochondria
105. Genes for ribosomal proteins S3, L16, 5 and S14 are clustered in the mitochondrial genome of Brassica napus L
106. Ribosomal protein S14 genes in broad bean mitochondrial DNA
107. Ribosomal protein S19 is encoded by the mitochondrial genome in Petunia hybrida
108. The gene for mitochondrial ribosomal protein S12 has been transferred to the nuclear genome in Oenothera
109. Evolution of gene content and gene organization in flowering plant mitochondrial DNA: a general survey and further studies on coxII gene transfer to the nucleus
110. The mitochondrial S13 ribosomal protein gene is silent in wheat embryos and seedlings
111. An rsp14 pseudogene is transcribed and edited in Arabidopsis mitochondria
112. Import of several tRNAs from the cytoplasm into the mitochondria in bean Phaseolus vulgaris
113. RNA-mediated transfer of the gene coxII from the mitochondrion to the nucleus during flowering plant evolution
114. Silent mitochondria and active nuclear genes for subunit 2 of cytochrome c oxidase (cox2) in soybean: evidence for RNA-mediated gene transfer
115. The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants
116. Organization and evolution of the maize mitochondrial genome
117. Moving pictures and pulse field gel electrophoresis show linear DNA molecules from chloroplasts and mitochondria
118. The form and size of mitochondrial DNA of the red bean Phaseolus vulgaris
119. Molecular heterogeneity among mitochondrial DNAs from different maize cytoplasms
120. Size distributions of circular molecules in plant mitochondrial DNAs
121. Analysis of a 120-kilobase mitochondrial chromosome in maize
122. Pulsed-field gel mapping of maize mitochondrial chromosomes
123. Nucleotide sequence of the S-1 mitochondrial DNA from the S cytoplasm of maize
124. Nucleotide sequence of the S-2 mitochondrial DNA from the S cytoplasm of maize
125. Linearization of maize mitochondrial chromosomes by recombination with linear episomes
126. Abnormal growth phenotypes and mitochondrial mutations in maize
127. An abnormal growth mutant in maize has a defective mitochondrial cytochrome oxidase gene
128. A partially deleted mitochondrial cytochrome oxidase gene in the NCS6 abnormal growth mutant of maize
129. The NCS3 mutation: genetic evidence for the expression of ribosomal protein genes in Zea mays mitochondria
130. Mitochondrial DNA changes in abnormal growth (nonchromosomal stripe) mutants of maize
131. Analysis of leaf sectors in the NCS6 mitochondrial mutant of maize
132. A multi-recombination model for the mtDNA rearrangements seen in maize cmsT regenerated plants
133. The mitochondrial genome organization of a maize fertile cmsT revertant line is generated through recombination between 2 sets of repeats
134. Stoichiometric differences in DNA molecules containing the atpA gene suggest mechanisms for the generation of mitochondrial genome diversity in maize
135. Unicircular structure of the Brassica hirta mitochondrial genomes
136. Tricircular mitochondrial genomes of Brassica and Raphanus: reversal of repeat configurations by inversion
137. Intraspecific variation and multicircularity in Brassica mitochondrial DNAs
138. Mitochondrial DNA rearrangements and transcriptional alterations in the male-sterile cytoplasm of ogura radish
139. Physical and gene organization of mitochondrial DNA in fertile and male sterile sunflower, CMS-associated alterations in structure and transcription of the atpA gene
140. Tripartite mitochondrial genome of spinach physical structure mitochondrial gene mapping and locations of transposed chloroplast DNA sequences
141. The sugar beet mitochondrial genome: a complex organization generated by homologous recombination
142. Molecular form and function of the wheat mitochondrial genome
143. Genetic and physical maps of a clone bank of mitochondrial DNA from rice
144. Mitochondrial genome structure of rice suspension culture from cytoplasmic male-sterile line (A-58 CMS): reappraisal of the master circle
145. Three copies of a single recombination repeat occur on the 443 kb mastercircle of the Petunia hybrida 3704 mitochondrial genome
146. The male sterility-associated pcf gene and the normal atp9-1 gene in Petunia are located on different mitochondrial DNA molecules
147. Unusual mitochondrial genome organization in cytoplasmic male sterile common bean and the nature of cytoplasmic reversion to fertility
148. Mitochondrial DNA rearrangement associated with fertility restoration and cytoplasmic reversion to fertility in cytoplasmic male sterile Phaseolus vulgaris L
149. Study of two different recombination events in maize cmsT regenerated plants during reversion to fertility
150. A mitochondrial gene is lost via homologous recombination during reversion of CMS T maize to fertility
151. Recombination between parental mitochondrial DNA following protoplast fusion can occur in a region which normally does not undergo intragenomic recombination in parental plants
152. Identification of new mitochondrial genome organizations in wheat plants regenerated from somatic tissue cultures
153. Mitochondrial DNA variability detected in a single wheat regenerant involves a rare recombination event across a short repeat
154. Reversible changes in the composition of the population of mtDNAs during dedifferentiation and regeneration in tobacco
155. Amplification of substoichiometric recombinant mitochondrial DNA sequences in a nuclear, male sterile mutant regenerated from protoplast culture in Nicotiana sylvestris
156. Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA: a primitive form of plant mitochondrial genome
157. Physical and gene mapping of cauliflower (Brassica oleracea) mitochondrial DNA
158. Genetic map of the Zea mays plastid chromosome