Chromosomal loci of 50 human keratinocyte cDNAs assigned by fluorescence in situ hybridization

Genomics

Volumn 28, Issue 2, 1995, Pages 273-279

  Morishima, Yohich ^a   Ariyama, Takeshi ^a   Yamanishi, Kiyofumi ^a   Abe, Tatsuo ^a   Ueda, Eiichiro ^a   Yasuno, Hirokazu ^a   Inazawa, Johji ^a  

^a KYOTO PREFECTURAL UNIVERSITY OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0029162874     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1995.1141     Document Type: Article

References (42)

1. Aberdam, D., Galliano, M. F., Mattei, M.-G., Pisani-Spadafora, A., Ortonne, J.-P., and Meneguzzi, G. (1994a). Assignment of mouse nicein genes to chromosome 1 and 18. Mamm. Genome 5: 229-233.
2. Aberdam, D., Galliano, M.-F., Vailly, J., Pulkkinen, L., Bonifas, J., Christiano, A. M., Tryggvason, K., Uitto, J., Epstein, E. H., Jr., Ortonne, J.-P. and Meneguzzi, G. (1994b). Herlitz’s junctional epidermolysis bullosa is linked to mutations in the gene (LAMC2) for the y2 subunit of nicein/kalinin (LAMININ-5). Nature Genet. 6: 299-304.
3. Adams, M. D., Kelley, J. M., Gocayne, J. D., Dubnick, M., Polymero-poulos, M. H., Xiao, H., Merril, C. R., Wu, A., Olde, B., Moreno, R. F., Kerlavage, A. R., Mc Combie, W. H., and Venter, J. C. (1991). Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252: 1651-1656.
4. Adams, M. D., Dubnick, M., Kerlavage, A. R., Moreno, R., Kelley, J. M., Utterback, T. R., Nagle, J. W., Fields, C. and Venter, J. C. (1992). Sequence identification of 2, 375 human brain genes. Nature 355: 632-634.
5. Adams, M. D., Soares, M. B., Kerlavage, A. R., Fields, C., and Venter, J. C. (1993). Rapid c DNA sequencing (expressed sequence tags) from a directionally cloned human infant brain c DNA library. Nature Genet. 4: 373-380.
6. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
7. Baudoin, C., Miquel, C., Blanchet-Bardon, C., Gambini, C., Meneguzzi, G., and Ortonne, J.-P. (1994a). Herlitz junctional epidermolysis bullosa keratinocytes display heterogeneous defects of nicein/kalinin gene expression. J. Clin. Invest. 93: 862-869.
8. Baudoin, C., Miquel, C., Gagnoux-Palaclos, L., Pulkkinen, L., Christiano, A., Uitto, J., Tadini, G., Ortonne, J.-P., and Meneguzzi, G. (1994b). A novel homozygous nonsense mutation in the LAMC2 gene in patients with the Herlitz junctional epidermolysis bullosa. Hum. Mol. Genet. 3: 1909-1910.
9. Bishop, J. O. (1974). The gene numbers game. Cell 2: 81-86.
10. Bodmer, W. F. (1981). Gene clusters, genome organisation, and complex phenotypes: When the sequence is known, what will it mean? Am. J. Hum. Genet. 33: 664-682.
11. Durkin, A. S., Maglott, D. R., and Nierman, W. C. (1992). Chromosomal assignment of 38 human brain expressed sequence tags (ESTs) by analyzing fluorescently labeled PCR products from hybrid cell panels. Genomics 14: 808-810.
12. Francke, U., and Foellmer, B. E. (1989). The glucocorticoid receptor gene is in 5q-q32. Genomics 4: 610-612.
13. Fukushima, A., Okubo, K., Sugino, H., Hori, N., Matoba, R., Niiyama, T., Murakawa, K., Yoshii, J., Yokoyama, M., and Matsubara, K. (1994). Chromosomal assignment of Hep G2 3'-directed partial c DNA sequences by Southern blot hybridization using monochromosomal hybrid cell panels. Genomics 22: 127-136.
14. Gieser, L., and Swaroop, A. (1992). Expressed sequence tags and chromosomal localization of c DNA clones from a subtracted retinal pigment epithelium library. Genomics 13: 873-876.
15. Giuffra, L. A., Kennedy, J. L., Castiglione, C. M., Evans, R. M., Was-muth, J. J., and Kidd, K. K. (1988). Glucocorticoid receptor maps to the distal long arm of chromosome 5. Cytogenet. Cell Genet. 49: 313-314.
16. Inazawa, J., Fukunaga, R., Seto, Y., Nakagawa, H., Misawa, S., Abe, T., and Nagata, S. (1991). Assignment of the human granulocyte colony-stimulating factor receptor gene (CSF32) to chromosome 1 at region p35-p34.3. Genomics 10: 1075-1078.
17. Inazawa, J., Sai to, H., Ariyama, T., Abe, T., and Nakamura, Y. (1993). High-re soluti on cytogenetic mapping of 342 new cosmid markers including 43 RFLP markers on human chromosome 17 by fluorescence in situ hybridization. Genomics 17: 153-162.
18. Isaya, G., Kalousek, F., and Rosenberg, L. E. (1992). Sequence analysis of rat mitochondrial intermediate peptidase: Similarity to zinc metallopeptidases and to a putative yeast homologue. Proc. Natl. Acad. Sci. USA 89: 8317-8321.
19. Jaye, M., Howk, R., Burgess, W., Ricca, G. A., Chiu, I.-M., Ravera, M. W., O’Brien, S. J., Modi, W. S., Maciag, T., and Drohan, W. N. (1986). Human endothelial cell growth factor: Cloning, nucleotide sequence, and chromosome localization. Science 233: 541-545.
20. Kahn, A. S., Wilcox, A. S., Polymeropoulos, M. H., Hopkins, J. A., Stevens, T. J., Robinson, M., Orpana, A. K., and Sikela, J. M. (1992). Single pass sequencing and physical and genetic mapping of human brain c DNAs. Nature Genet. 2: 180-185.
21. Konishi, K., Morishima, Y., Ueda, E., Kibe, Y., Nonomura, K., Ya-manishi, K., and Yasuno, H. (1994). Cataloging of the genes expressed in human keratinocytes: Analysis of607 randomly isolated c DNA sequences. Biochem. Biophys. Res. Commun. 202: 976-983.
22. Langlois, R. G., Yu, L.-C., Gray, J. W., and Carrano, A. V. (1982). Quantitative karyotyping of human chromosomes by dual beam flow cytometry. Proc. Natl. Acad. Sci. USA 79: 7876-7880.
23. L’Etoile, N. D., Fahnestock, M. L., Shen, Y., Aebersold, R., and Berk, A. J, (1994). Human transcription factor IIIC box B binding subunit. Proc. Natl. Acad. Sci. USA 91: 1652-1656.
24. Lind, L., Lundström, A., Hofer, P.-Á, and Holmgren, G. (1994). The gene for diffuse palmoplantar keratoderma of the type found in northern Sweden is localized to chromosome 12qll-ql3. Hum. Mol. Genet. 3: 1789-1793.
25. Mattei, M.-G., Riviere, M., Krust, A., Ingvarsson, S., Venström, B., Islam, M. Q., Levan, G., Kautner, P., Zelent, A., Chambón, P., Szpirer, J., and Szpirer, C. (1991). Chromosomal assignment of retinoic acid receptor (RAR) genes in the human, mouse, and rat genomes. Genomics 10: 1061-1069.
26. McKusick, V. A. (1994). “Mendelian Inheritance in Man,” 11th ed., The Johns Hopkins Univ. Press, Baltimore and London.
27. Mooslehner, K., Müller, U., Karls, U., Hamann, L., and Harbers, K. (1991), Structure and expression of a gene encoding a putative GTP-binding protein identified by provirous integration in a transgenic mouse strain. Mol. Cell. Biol. 11: 886-893.
28. Murakawa, K., Matsubara, K., Fukushima, A., Yoshii, J., and Okubo, K. (1994). Chromosomal assignments of 3'-directed partial c DNA sequences representing novel genes expressed in granulocytoid cells. Genomics 23: 379-389.
29. Okubo, K., Hori, N., Matoba, R., Niiyama, T., Fukushima, A., Kojima, Y., and Matsubara, K. (1992). Large scale c DNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nature Genet. 2: 173-179.
30. Olaisen, B., and Gedde-Dahl, T. (1973). GPT-epidermolysis bullosa simplex (EBS Ogna) linkage in man. Hum. Hered. 23: 189-196.
31. Pearson, W. R., and Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85: 2444-2448.
32. Polymeropoulos, M. H., Xiao, H., Glodek, A., Gorski, M., Adams, M. D., Moreno, R. F., Fitzgerald, M. G., Venter, J. C., and Merril, C. R. (1992). Chromosomal assignment of 46 brain c DNAs. Genomics 12: 492-496.
33. Polymeropoulos, M. H., Xiao, H., Sikela, J. M., Adams, M., Venter, J. C., and Merril, C. R. (1993). Chromosomal distribution of 320 genes from a brain c DNA library. Nature Genet. 4: 381-386.
34. Popescu, N. C., Bowden, P. E., and Di Paolo, J. A. (1989). Two type II keratin genes are localized on human chromosome 12. Hum. Genet. 82: 109-112.
35. Pulkkinen, L., Christiano, A. M., Gcrecke, D., Wagman, D. W., Bur-geson, R. E., Pittelkow, M. R., and Uitto, J. (1994a). A homozygous nonsense mutation in the 03 chain gene of laminin 5 (LAMB3) in Herlitz junctional epidermolysis bullosa. Genomics 24: 357-360.
36. Pu Jkkinen, L., Christiano, A. M., Airenne, T., Haakana, H., Tryggva-son, K, and Uitto, J. (1994b). Mutations in the 7 2 chain gene (LAMC2) of kalinin/laminin 5 in the junctional forms of epidermolysis bullosa. Nature Genet. 6: 293-298.
37. Rosenberg, M., Ray Chaudhury, A., Shows, T. B., Le Beau, M. M., and Fuchs, E. (1988). A group of type I keratin genes on human chromosome 17: Characterization and expression. Mol. Cell. Biol. 8: 722-736.
38. Rosenberg, M., Fuchs, E., Le Beau, M. M., Eddy, R. L., and Shows, T. B. (1991). Three epidermal and one simple epithelial type II keratin genes map to human chromosome 12. Cytogenet. Cell. Genet. 57: 33-38.
39. Saccone, S., De Sario, A., Valle, G. D., and Bernardi, G. (1992). The highest gene concentrations in the human genome are in telomeric bands of metaphase chromosomes. Proc. Natl. Acad. Sci. USA 89: 4913-4917.
40. Shows, T. B., Byers, M. G., and Fiddes, J. (1989). Assignment of FGFB (basic fibroblast growth factor) to chromosome 4q25 and FGFA (acidic fibroblast growth factor) to chromosome 5q31-q33. Cytogenet. Cell Genet. 51: 1079.
41. Southern, E. M. (1992). Detection of specific sequences among DNA fragments separated by gel electrophoresis. Biotechnology 24:122-139.
42. Takeda, J., Yano, H., Eng, S., Zeng, Y„ and Bell, G. I. (1993). A molecular inventory of human pancreatic islets: Sequence analysis of 1000 c DNA clones. Hum. Mol. Genet. 2: 1793-1798.