A radiation hybrid map with 60 loci covering the entire short arm of chromosome 12

Genomics

Volumn 29, Issue 1, 1995, Pages 170-178

  Raeymaekers, Peter ^a   Van Zand, Karel ^a   Jun, Lin ^a   Höglund, Mattias ^b   Cassiman, Jean Jacques ^d   Van den Berghe, Herman ^c   Marynen, Peter ^a  

^a Human Genome Laboratory   (Belgium)

^b LUND UNIVERSITY HOSPITAL   (Sweden)

^c UNIVERSITY OF LEUVEN   (Belgium)

^d NONE

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; CANCER; CHROMOSOME 12P; CHROMOSOME ABERRATION; CHROMOSOME BREAKAGE; CHROMOSOME MAP; CHROMOSOME MARKER; DNA SEQUENCE; GENE LOCUS; HUMAN; HUMAN CELL; HYBRID; NONHUMAN; PRIORITY JOURNAL;

ANIMAL; BASE SEQUENCE; CELL LINE; CENTROMERE; CHROMOSOME ABERRATIONS; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, YEAST; CHROMOSOMES, HUMAN, PAIR 12; CRICETULUS; GENETIC MARKERS; HAMSTERS; HUMAN; HYBRID CELLS; HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE; IN SITU HYBRIDIZATION, FLUORESCENCE; MOLECULAR SEQUENCE DATA; NEOPLASMS; OLIGONUCLEOTIDE PROBES; POLYMORPHISM (GENETICS); SUPPORT, NON-U.S. GOV'T; TELOMERE;

EID: 0029096009     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1006/geno.1995.1228     Document Type: Article

References (52)

1. Abel, K. J., Boehnke, M., Prahalad, M., Ho, P., Flejter, W. L., Watkins, M., Vander Stoep, J., Chandrasekharappa, S. C., Collins, F. S., Glover, T. W., and Weber, B. L. (1993). A radiation hybrid map of the BRCAl region of chromosome 17ql2-q21. Genomics 17: 632-641.
2. Adams, M. D., Kerlavage, A. R., Fields, C., and Venter, J. C. (1993). 3400 new expressed sequence tags identify diversity of transcripts in human brain. Nature Genet. 4: 256-267.
3. Aerssens, J., Chaffanet, M., Baens, M., Matthijs, G., Van den Berghe, H., Cassiman, J.-J., and Marynen, P. (1994). Regional assignment of seven loci to 12pl3.2-pter by PCR analysis of somatic cell hybrids containing the der(12) or the der(X) chromosome from a mesothelioma showing t(X;12)(q22;pl3). Genomics 20: 119-121.
4. Aerssens, J., Guo, C., Vermeesch, J., Baens, M., Browne, D., Litt, M., Van den Berghe, H., and Marynen, P. (1995). A physical map of the region spanning the chromosome 12 translocation breakpoint in a mesothelioma with a t(X; 12)(q22;pl3). Cytogenet. Cell Genet., in press.
5. Albertsen, H. M., Abderrahim, H., Cann, H. M., Dausset, J., Le Pas-lier, D., and Cohen, D. (1990). Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc. Natl. Acad. Sci. USA 87: 4256-4260.
6. Alvarez, L., Evans, J. W., Wilks, R., Lucas, J. N., Brown, J. M., and Giaccia, A. J. (1993). Chromosomal radiosensitivity at intrachromosomal telomeric sites. Genes Chromo. Cancer 8: 8-14.
7. Baens, M., Aerssens, J., van Zand, K., Van den Berghe, H., and Marynen, P. (1995). Isolation and regional assignment of human chromosome 12p c DNAs. Genomics 29: 44-52.
8. Baldini, A., Rocchi, M., Archidiácono, N., Miller, O. J., and Miller, D. A. (1990). A human alpha satellite DNA subset specific for chromosome 12. Am. J. Hum. Genet. 46: 784-788.
9. Barone, F., Belli, M., and Mazzei, F. (1994). Influence of DNA conformation on radiation-induced single-strand breaks. Radiai. Environ. Biophys. 33: 23-33.
10. Bishop, D. T., and Crockford, G. P. (1992). Comparisons of radiation hybrid mapping and linkage mapping. Cytogenet. Cell Genet. 59: 93-95.
11. Boehnke, M. (1992). Radiation hybrid mapping by minimization of the number of obligate chromosome breaks. Cytogenet. Cell Genet. 59: 96-98.
12. Boehnke, M., Lange, K., and Cox, D. R. (1991). Statistical methods for multipoint radiation hybrid mapping. Am. J. Hum. Genet. 49: 1174-1188.
13. Brown, W. R. A., Mac Kinnon, P. J., Villasante, A., Spurr, N., Buckle, V. J., and Dobson, M. J. (1990). Structure and polymorphism of human telomere-associated DNA. Cell 63: 119-132.
14. Buetow, K. H., Weber, J. L., Ludwigsen, S., Scherpbier-Heddema, T., Duyck, G. M., Sheffied, V. C., Wang, Z., and Murray, J. C. (1994). Integrated human genome-wide maps constructed using the CEPH reference panel. Nature Genet. 6: 391-395.
15. Chaffanet, M., Baens, M., Aerssens, J., Schoenmakers, E., Cassiman, J.-J., and Marynen, P. (1995). Mapping of an ordered set of 14 cosmids to human chromosome 12p by two-colour in situ hybridisation. Cytogenet. Cell Genet. 69; 27-32.
16. Chumakov, I., Rigault, P., Guillou, S., Ougen, P., Billaut, A., Guasconi, G., Gervy, P., Le Gall, I., Soularue, P., Grinas, L., Bougueleret, L., Bellanne-Chantelot, C., Lacroix, B., Barillot, E., Gesnouin, P., Pook, S., Vaysseix, G., Frelat, G., Schmitz, A., Sambucy, J.-L., Bosch, A., Estivili, X., Weissenbach, J., Vignai, A., Riethman, H., Cox, D., Patterson, D., Gardiner, K., Hattori, M., Sakaki, Y., Ichikawa, H., Ohki, M., Le Paslier, D., Heilig, R., Antonarakis, S., and Cohen, D. (1992). Continuum of overlapping clones spanning entire human chromosome 21q. Nature 359: 380-387.
17. Cohen, D., Chumakov, I., and Weissenbach, J. (1993). A first generation physical map of the human genome. Nature 366: 398-400.
18. Cox, D., Burmeister, M., Price, E. R., Kim, S., and Myers, R. S. (1990). Radiation hybrid mapping: A somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 250: 245-250.
19. Craig, I. W., Gedde-Dahl, T., Jr., Gemmil, R., and Kucherlapati, R. (1993). Report of the committee on the genetic constitution of chromosome 12. Genome Priority Rep. 1: 402-418.
20. Foote, S., Vollrath, D., Hilton, A., and Page, D. C. (1992). The human Y chromosome: Overlapping DNA clones spanning the euchromatic region. Science 258: 60-66.
21. Franchet-Beuzit, J., Spotheim-Maurizot, M., Sabattier, R., Blazy-Baudras, B., and Charlier, M. (1993). Radiolytic footprinting: Beta rays, gamma photons, and fast neutrons probe DNA-protein interactions. Biochemistry 32: 2104-2110.
22. Francke, U., Chang, E., Comeau, K., Geigl, E.-M., Giacalone, J., Li, X., Luna, J., Moon, A., Welch, S., and Wilgenbus, P. (1994). A radiation hybrid map of human chromosome 18. Cytogenet. Cell Genet. 66: 196-213.
23. Fryns, J. P., Kleczkowska, A., and Van den Berghe, H. (1990). Interstitial deletion of the short arm of chromosome 12: A report of a new patient and review of the literature. Ann. Genet. 33: 43-45.
24. Golub, T. R., Barker, G. F., Lovett, M., and Gilliland, D. G. (1994). Fusion of PDGF receptor beta to a novel ETS-like gene, TEL, in chronic myelomonocytic leukemia with t(5:12) chromosomal translocation. Cell 77: 307-316.
25. Gorski, J. L., Boehnke, M., Reyner, E. L., and Burright, E. N. (1992). A radiation hybrid map of the proximal short arm of the human X chromosome spanning incontinentia pigmenti 1 (IP1) translocation breakpoints. Genomics 14: 657-665.
26. Gyapay, G., Morisette, J., Vignai, A., Dib, C., Fizames, C., Millas-seau, P., Marc, S., Bernardi, G., Lathrop, M., and Weissenbach, J. (1994). The 1993-1994 Généthon human genetic linkage map. Nature Genet. 7: 246-339.
27. Haldane, J. B. S. (1919). The combination of linkage values, and the calculation of distance between the loci of linked factors. J. Genet. 8: 299-309.
28. Hartwig, M. (1992). Probing DNA superstructure in human quiescent lymphocytes by X-ray-induced double-strand breakage. Radiai. Environ. Biophys. 31: 83-89.
29. Hastie, N. D., and Allshire, R. C. (1989). Human telomeres: Fusion and interstitial sites. Trends Genet. 5: 326-331.
30. Höglund, M., Mitelman, F., and Mandahl, N. (1995). A human 12p-derived cosmid hybridizing to subsets of human and chimpanzee telomeres. Cytogenet. Cell Genet. 70: 88-91.
31. James, M. R., Richard, C. W., Schott, J.-J., Yousry, C., Clark, K., Bell, J., Terwilliger, J., Hazan, J., Dubay, C., Vignai, A., Agra-part, M., Imai, T., Nakamura, Y., Polymeropoulos, M., Weissenbach, J., Cox, C. R., and Lathrop, G. M. (1994). A radiation hybrid map of 506 STS markers spanning human chromosome 11. Nature Genet. 8: 70-76.
32. Kovacs, M. S., Evans, J. W., Johnstone, I. M., and Brown, J. M. (1994). Radiation-induced damage, repair and exchange formation in different chromosomes of human fibroblasts determined by fluorescence in situ hybridization. Radiai. Res. 137: 34-43.
33. Kucherlapati, R., Craig, I., and Marynen, P. (1994). Report of the second international workshop on human chromosome 12 mapping 1994. Cytogenet. Cell Genet. 67: 245-276.
34. Lunetta, K. L., and Boehnke, M. (1994). Multipoint radiation hybrid mapping: Comparison of methods, sample size requirements, and optimal study characteristics. Genomics 21: 92-103.
35. Montgomery, K. T., Le Blanc-Straceski, J. M., Renault, B., Yoon, S-J., Marondel, I., Herdman, V., Bray-Ward, P., Banks, A., Ward, D., Kucherlapati, R., and Krauter, K. S. (1994). An STS content-based, integrated physical and genetic map, in the region. 12pl2, Cytogenet. Cell Genet. 67: 271.
36. Morton, N. E. (1991). Parameters of the human genome. Proc. Natl. Acad. Sci. USA 88: 7474-7476.
37. Muhlmann-Diaz, M. C., and Bedford, J. S. (1994). Breakage of human chromosome 4, 19 and Y in GO cells immediately after exposure to ganvma-rays. Int. J. Radiai. Biol. 65: 165-173.
38. Murray, J. C., Buetow, K. H., Weber, J. L., Ludwigsen, S., Scherp-bier-Heddema, T., Manion, F., Quillen, J., Sheffield, V. C., Surden, S., and Duyck, G. M. (1994). A comprehensive human linkage map with centimorgan density. Science 265: 2049-2054.
39. Nelson, D. L., Ledbetter, S. A., Corbo, L., Victoria, M., Ramirez-Solis, R., Webster, T. D., Ledbetter, D. H., and Caskey, C. T. (1989). Alu polymerase chain reaction: A method for rapid isolation of human-specific sequences from complex DNA sources. Proc. Natl. Acad. Sci. USA 86: 6686-6690.
40. Park, V. M., Gustashaw, K. M., and Wathen, T. M. (1992). The presence of interstitial telomeric sequences in constitutional chromosome abnormalities. Am. J. Hum. Genet. 50: 914-923.
41. Polymeropoulos, M. H., Xiao, H., Sikela, J. M., Adams, M., Venter, J. C., and Merrill, C. R. (1993). Chromosomal distribution of 320 genes from a brain c DNA library. Nature Genet. 4: 381-386.
42. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). “Molecular Cloning: A Laboratory Manual,” 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
43. Sato, Y., Suto, Y., Pietenpol, J., Golub, T. R., Gilliland, D. G., Roberts, J. M., Trask, B. J., Le Beau, M. M., Vogelstein, B., Rowley, J. D., and Bohlander, S. K. (1994). Tel and the gene for P27iapi are frequently deleted in patients with 12pl3 rearrangements and hematopoietic malignancies. Blood 84: 292.
44. Sikela, J. M., and Auffray, C. (1993). Finding new genes faster than ever. Nature Genet. 3: 189-190.
45. Silver, A., and Cox, R. (1993). Telomere-like DNA polymorphisms associated with genetic predisposition to acute myeloid leukemia in irradiated CBA mice. Proc. Natl. Acad. Sci. USA 90:1407-1410.
46. Starnato, T. D., and Denko, N. (1990). Asymmetric field inversion gel electrophoresis: A new method for detecting DNA double-strand breaks in mammalian cells. Radiai. Res. 121: 196-205.
47. Warburton, D., Gers en, S., Yu, M.-T., Jackson, C., Handelin, B., and Housman, D. (1990). Monochromosomal rodent-human hybrids from microcell fusion of human lymphoblastoid cells containing an inserted dominant selectable marker. Genomics 6: 358-366.
48. Weissenbach, J., Gyapay, G., Dib, C., Vignai, A., Morisette, J., Millas-seau, P., Vaysseix, G., and Lathrop, M. (1992). A second-generation linkage map of the human genome. i Vaiurc 359: 794-801.
49. Westerveld, A., Visser, R. P. L. S., Kahn, P. M., and Bootsma, D. (1971). Loss of human genetic markers in man-Chinese hamster ovary cells. Nature New Biol. 234: 20-22.
50. Wick, K. L., and Matthews, K. S. (1991). Interactions between lac repressor protein and site-specific bromodeoxyuridine-substituted operator DNA: Ultraviolet footprinting and protein-DNA crosslink formation. J. Biol. Chem. 266: 6106-6112.
51. Zhang, J. (1992). “A Contribution to the Physical Map of Human Chromosome 12p,'5 Ph.D. thesis at the Katholieke Universiteit Leuven, Faculteit der Geneeskunde.
52. Zhang, J., Marynen, P., Devriendt, K., Fryns, J. P., Van den Berghe, H., and Cassiman, J.-J. (1989). Molecular analysis of the isochromosome 12p in the Pallister-Killian syndrome: Construction of a mouse-human hybrid cell line containing an i(12p) as the sole human chromosome. Hum. Genet. 83: 359-363.