-
1
-
-
0027474991
-
Left-handed polyproline II helices commonly occur in globular proteins
-
Adzhubei, A. A. & Sternberg, M. J. E. (1993). Left-handed polyproline II helices commonly occur in globular proteins. J. Mol. Biol. 229, 472-493.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 472-493
-
-
Adzhubei, A.A.1
Sternberg, M.J.E.2
-
2
-
-
0023653251
-
Third type of secondary structure: Non-cooperative mobile conformation
-
Adzhubei, A. A., Eisenmenger, F., Tumanyan, V. G., Zinke, M., Brodzinski, S. & Esipova, N. G. (1987). Third type of secondary structure: non-cooperative mobile conformation. Biochem. Biophys. Res. Commun. 146, 934-938.
-
(1987)
Biochem. Biophys. Res. Commun.
, vol.146
, pp. 934-938
-
-
Adzhubei, A.A.1
Eisenmenger, F.2
Tumanyan, V.G.3
Zinke, M.4
Brodzinski, S.5
Esipova, N.G.6
-
4
-
-
0001208994
-
The crystal structure of alloxan
-
Bolton, W. (1964). The crystal structure of alloxan. Acta Crystallogr. 17, 147-152.
-
(1964)
Acta Crystallogr
, vol.17
, pp. 147-152
-
-
Bolton, W.1
-
5
-
-
0002962709
-
The crystal structure of triketoindane (Anhydrous ninhyrin). A structure showing close C=0 or c=N interactions
-
Bolton, W. (1965). The crystal structure of triketoindane (anhydrous ninhyrin). A structure showing close C=0 or c=N interactions. Acta Crystallogr. 18, 5-10.
-
(1965)
Acta Crystallogr
, vol.18
, pp. 5-10
-
-
Bolton, W.1
-
6
-
-
84986512474
-
States, D.)., Swaminathan, S. & Karplus, M. (1983). CHARMM: A program for macromolecular energy minimisation and dynamics calculations
-
Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D.)., Swaminathan, S. & Karplus, M. (1983). CHARMM: a program for macromolecular energy minimisation and dynamics calculations. J. Comput. Chem. 4, 187-217.
-
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
-
7
-
-
0041140017
-
Simulations of peptide conformational dynamics and thermodynamics
-
Brooks, C. L., III & Case, D. A. (1993). Simulations of peptide conformational dynamics and thermodynamics. Chem. Rev. 93, 2487-2502.
-
(1993)
Chem. Rev.
, vol.93
, pp. 2487-2502
-
-
Brooks, C.L.1
Case, D.A.2
-
8
-
-
0004166732
-
Structure correlation: The chemical point of view
-
Burgi, H. D. & Dunitz, J. D., VCH, Weinheim & New York
-
Burghi, H. B. & Dunitz, J. D. (1994). Structure correlation: the chemical point of view. In Structure Correlation (Burgi, H. D. & Dunitz, J. D., eds), pp. 163-204, VCH, Weinheim & New York.
-
(1994)
Structure Correlation
, pp. 163-204
-
-
Burghi, H.B.1
Dunitz, J.D.2
-
9
-
-
0001135446
-
Chemical reaction paths. IV. Aspects of O … C=0 interactions in crystals
-
Burgi, H. B., Dunitz, J. D. & Shefter, E. (1974). Chemical reaction paths. IV. Aspects of O … C=0 interactions in crystals. Acta Crystallogr. sect. B, 30, 1517-1527.
-
(1974)
Acta Crystallogr. Sect. B
, vol.30
, pp. 1517-1527
-
-
Burgi, H.B.1
Dunitz, J.D.2
Shefter, E.3
-
10
-
-
0015914783
-
Conformations of (3-pleated sheets in proteins
-
Chothia, C. (1973). Conformations of (3-pleated sheets in proteins. J Mol. Biol. 75, 295-302.
-
(1973)
J Mol. Biol.
, vol.75
, pp. 295-302
-
-
Chothia, C.1
-
11
-
-
0021095115
-
Coiling of P-pleated sheets
-
Chothia, C. (1983). Coiling of P-pleated sheets. J. Mol. Biol. 163, 107-117.
-
(1983)
J. Mol. Biol.
, vol.163
, pp. 107-117
-
-
Chothia, C.1
-
12
-
-
0001244377
-
The origin of the right-handed twist of P-sheets of poly(L-valine) chains
-
Chou, K.-C. & Scheraga, H. A. (1982). The origin of the right-handed twist of P-sheets of poly(l-valine) chains. Proc. Nat. Acad. Sci., U.S.A. 79, 7047-7051.
-
(1982)
Proc. Nat. Acad. Sci., U.S.A.
, vol.79
, pp. 7047-7051
-
-
Chou, K.-C.1
Scheraga, H.A.2
-
13
-
-
0020491376
-
Structure of P-sheets. Origin of the right-handed twist and of the increased stability of antiparallel over parallel sheets
-
Chou, K.-C., Pottle, M., Nemethy, G., Ueda, Y. & Scheraga, H. A. (1982). Structure of P-sheets. Origin of the right-handed twist and of the increased stability of antiparallel over parallel sheets. J Mol. Biol. 162, 89-112.
-
(1982)
J Mol. Biol.
, vol.162
, pp. 89-112
-
-
Chou, K.-C.1
Pottle, M.2
Nemethy, G.3
Ueda, Y.4
Scheraga, H.A.5
-
14
-
-
0001311307
-
The effect of amino acid composition on the twist and relative stability of parallel and antiparallel P-sheets
-
Chou, K.-C., Nemethy, G. & Scheraga, H. A. (1983a). The effect of amino acid composition on the twist and relative stability of parallel and antiparallel P-sheets. Biochemistry, 22, 6213-6221.
-
(1983)
Biochemistry
, vol.22
, pp. 6213-6221
-
-
Chou, K.-C.1
Nemethy, G.2
Scheraga, H.A.3
-
15
-
-
0021095536
-
The role of inter-chain interaction in the stabilisation of the right-handed twist of P-sheets
-
Chou, K.-C., Nemethy, G. & Scheraga, H. A. (1983b). The role of inter-chain interaction in the stabilisation of the right-handed twist of P-sheets. J Mol. Biol. 168, 389-407.
-
(1983)
J Mol. Biol.
, vol.168
, pp. 389-407
-
-
Chou, K.-C.1
Nemethy, G.2
Scheraga, H.A.3
-
16
-
-
0343862138
-
Energetics of interactions of regular structural elements in proteins
-
Chou, K.-C., Nemethy, G. & Scheraga, H. A. (1990). Energetics of interactions of regular structural elements in proteins. Acc. Chem. Res. 23, 134-141.
-
(1990)
Acc. Chem. Res.
, vol.23
, pp. 134-141
-
-
Chou, K.-C.1
Nemethy, G.2
Scheraga, H.A.3
-
17
-
-
0023769808
-
Energetics of ligand binding to E. Coli dihydrofolate reductase
-
Dauber-Osguthorpe, P., Roberts, V. A., Osguthorpe, D. J., Wolff, J., Guest, M. & Hagler, A. T. (1988). Energetics of ligand binding to E. coli dihydrofolate reductase. Proteins: Struct. Fund. Genet. 4, 31-47.
-
(1988)
Proteins: Struct. Fund. Genet.
, vol.4
, pp. 31-47
-
-
Dauber-Osguthorpe, P.1
Roberts, V.A.2
Osguthorpe, D.J.3
Wolff, J.4
Guest, M.5
Hagler, A.T.6
-
18
-
-
0001626451
-
Packing analysis of organic crystals containing C=0 or C=N groups. J
-
Gavezzotti, A. (1990). Packing analysis of organic crystals containing C=0 or C=N groups. J Phys. Chem. 94, 4319-4325.
-
(1990)
Phys. Chem.
, vol.94
, pp. 4319-4325
-
-
Gavezzotti, A.1
-
19
-
-
0016399126
-
Energy functions for peptides and proteins. II. The amide hydrogen bond and calculation of amide crystal properties
-
Hagler, A. T. & Lifson, S. (1974). Energy functions for peptides and proteins. II. The amide hydrogen bond and calculation of amide crystal properties. J. Amer. Chem. Soc. 96, 5327-5335.
-
(1974)
J. Amer. Chem. Soc.
, vol.96
, pp. 5327-5335
-
-
Hagler, A.T.1
Lifson, S.2
-
20
-
-
6344256147
-
CFF studies of intermolecular forces in hydrogen-bonded crystals 2. A Benchmark for the objective comparison of alternative force fields
-
Hagler, A. T., Lifson, S. & Dauber, P. (1979). CFF studies of intermolecular forces in hydrogen-bonded crystals 2. A Benchmark for the objective comparison of alternative force fields. J Amer. Chem. Soc. 101, 5122-5130.
-
(1979)
J Amer. Chem. Soc.
, vol.101
, pp. 5122-5130
-
-
Hagler, A.T.1
Lifson, S.2
Dauber, P.3
-
21
-
-
33645941402
-
The OPLS potential functions for proteins. Energy minimization for crystals of cyclic peptides and crambin
-
Jorgenson, W. L. & Tirado-Rives, J. (1988). The OPLS potential functions for proteins. Energy minimization for crystals of cyclic peptides and crambin. J. Amer. Chem. Soc. 110, 1657-1666.
-
(1988)
J. Amer. Chem. Soc.
, vol.110
, pp. 1657-1666
-
-
Jorgenson, W.L.1
Tirado-Rives, J.2
-
22
-
-
0025048105
-
Molecular dynamics simulations in biology
-
Karplus, M. & Petsko, G. A. (1990). Molecular dynamics simulations in biology Nature (London), 347, 631-639.
-
(1990)
Nature (London)
, vol.347
, pp. 631-639
-
-
Karplus, M.1
Petsko, G.A.2
-
23
-
-
6344256147
-
Consistent force field studies of intermolecular forces in hydrogen bonded crystals
-
Lifson, S., Hagler, A. T. & Dauber, P. (1979). Consistent force field studies of intermolecular forces in hydrogen bonded crystals. J Amer. Chem. Soc. 101, 5111-5121.
-
(1979)
J Amer. Chem. Soc.
, vol.101
, pp. 5111-5121
-
-
Lifson, S.1
Hagler, A.T.2
Dauber, P.3
-
24
-
-
0029048210
-
Coulombic interactions between partially charged main-chain atoms not hydrogen-bonded to each other influence the conformations of a-helices and antiparallel P-sheet. A new method for analysing forces between hydrogen bonding groups in proteins includes all the Coulombic interactions
-
Maccallum, P. H., Poet, R. & Milner-White, E. J. (1995). Coulombic interactions between partially charged main-chain atoms not hydrogen-bonded to each other influence the conformations of a-helices and antiparallel P-sheet. A new method for analysing forces between hydrogen bonding groups in proteins includes all the Coulombic interactions. J. Mol. Biol. 248, 361-373.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 361-373
-
-
Maccallum, P.H.1
Poet, R.2
Milner-White, E.J.3
-
25
-
-
0025690309
-
Situations of gamma-turns in proteins; their relationship to a-helices, P-sheets and ligand binding sites
-
Milner-White, E. J. (1990). Situations of gamma-turns in proteins; their relationship to a-helices, P-sheets and ligand binding sites. J. Mol. Biol. 216, 385-397.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 385-397
-
-
Milner-White, E.J.1
-
26
-
-
0000302360
-
Loops, bulges, turns and hairpins in proteins
-
Milner-White, E. J. & Poet, R. (1987). Loops, bulges, turns and hairpins in proteins. Trends Biochem. Sci. 12, 189-193.
-
(1987)
Trends Biochem. Sci.
, vol.12
, pp. 189-193
-
-
Milner-White, E.J.1
Poet, R.2
-
27
-
-
0027080914
-
Pyrrolidine ring puckering in proteins and polypeptides
-
Milner-White, E. J., Bell, L. H. & Maccallum, P. H. (1992). Pyrrolidine ring puckering in proteins and polypeptides. J Mol. Biol. 228, 725-734.
-
(1992)
J Mol. Biol.
, vol.228
, pp. 725-734
-
-
Milner-White, E.J.1
Bell, L.H.2
Maccallum, P.H.3
-
28
-
-
0345296859
-
Potential Energy Functions
-
Goodfellow, J. M. & Moss, D. S., Ellis Horwood, Chichester, UK
-
Price, S. L. & Goodfellow, J. M. (1992). Potential Energy Functions. In Computer Modelling of Biological Processes (Goodfellow, J. M. & Moss, D. S., eds), pp. 85-100, Ellis Horwood, Chichester, UK.
-
(1992)
Computer Modelling of Biological Processes
, pp. 85-100
-
-
Price, S.L.1
Goodfellow, J.M.2
-
29
-
-
73649194755
-
Steretochemistry of polypeptide chain configurations
-
Ramachandran, G. N., Sasiekharan, V. & Ramakrishnan, C. (1963). Steretochemistry of polypeptide chain configurations. J. Mol. Biol. 7, 95-99.
-
(1963)
J. Mol. Biol.
, vol.7
, pp. 95-99
-
-
Ramachandran, G.N.1
Sasiekharan, V.2
Ramakrishnan, C.3
-
30
-
-
0014005416
-
Molecular structure of polyglycine II
-
Ramachandran, G. N., Sasiekharan, V. & Ramakrishnan, C. (1966). Molecular structure of polyglycine II. Biochim. Biophys. Acta, 112, 168-170.
-
(1966)
Biochim. Biophys. Acta
, vol.112
, pp. 168-170
-
-
Ramachandran, G.N.1
Sasiekharan, V.2
Ramakrishnan, C.3
-
31
-
-
0019443447
-
Protein Anatomy
-
Richardson R. (1981). Protein Anatomy. Adv. Prot. Chem, 34, 167-339.
-
(1981)
Adv. Prot. Chem
, vol.34
, pp. 167-339
-
-
Richardson, R.1
-
32
-
-
85027649229
-
A comparison of the CHARMM, AMBER and ECEPP potentials for peptides
-
Roterman Lambert, M. L., Gibson, K. & Scheraga, H. A. (1989). A comparison of the CHARMM, AMBER and ECEPP potentials for peptides. J Biomol. Struct. Dynam. 7, 421-453.
-
(1989)
J Biomol. Struct. Dynam.
, vol.7
, pp. 421-453
-
-
Roterman Lambert, M.L.1
Gibson, K.2
Scheraga, H.A.3
-
33
-
-
0020991935
-
Structural properties of protein P-sheets
-
Salemme, F. R. (1983). Structural properties of protein P-sheets. Prog. Biophys. Mol. Biol. 42, 95-133.
-
(1983)
Prog. Biophys. Mol. Biol.
, vol.42
, pp. 95-133
-
-
Salemme, F.R.1
-
34
-
-
0001567029
-
Structure of polyproline. II
-
Sasiekharan, V. (1959). Structure of polyproline. II. Acta Crystallogr. 12, 897-903.
-
(1959)
Acta Crystallogr
, vol.12
, pp. 897-903
-
-
Sasiekharan, V.1
-
35
-
-
0027052447
-
Inclusion of solation free energy with molecular mechanics energy: Alanyl dipeptide as a test case
-
Schiffer, C. A., Caldwell, J. W., Stroud, R. M. & Kollman, P. A. (1992). Inclusion of solation free energy with molecular mechanics energy: alanyl dipeptide as a test case. Protein Sci. 1, 396-400.
-
(1992)
Protein Sci
, vol.1
, pp. 396-400
-
-
Schiffer, C.A.1
Caldwell, J.W.2
Stroud, R.M.3
Kollman, P.A.4
-
36
-
-
0017152045
-
Extended helical conformation newly observed in protein folding
-
Srinivasan R., Balasubramanian, R. & Rajan, S. S. (1976). Extended helical conformation newly observed in protein folding. Science, 194, 720-722.
-
(1976)
Science
, vol.194
, pp. 720-722
-
-
Srinivasan, R.1
Balasubramanian, R.2
Rajan, S.S.3
-
37
-
-
0020807255
-
Computer simulation of the conformational properties of retro-inverso peptides I
-
Stem, P. S., Chorev, M., Goodman, M. & Hagler, A. T. (1983). Computer simulation of the conformational properties of retro-inverso peptides I. Biopolymers, 22, 1885-1900.
-
(1983)
Biopolymers
, vol.22
, pp. 1885-1900
-
-
Stem, P.S.1
Chorev, M.2
Goodman, M.3
Hagler, A.T.4
-
38
-
-
0017073680
-
On the conformation of proteins: The handedness of the P-strand-a-helix-p-strand unit
-
Sternberg, M. J. E. & Thornton, J. M. (1976). On the conformation of proteins: the handedness of the P-strand-a-helix-p-strand unit. J Mol. Biol. 105, 367-382.
-
(1976)
J Mol. Biol.
, vol.105
, pp. 367-382
-
-
Sternberg, M.J.E.1
Thornton, J.M.2
-
39
-
-
0001868266
-
The fully extended polypeptide conformation
-
Balaram P. & Ramaseshan, S. Eds). Indian Academy of Sciences, Bangalore
-
Toniolo, C. & Benedetti, E. (1991). The fully extended polypeptide conformation. In Molecular Conformation and Biological Interactions (Balaram P. & Ramaseshan, S. Eds). Indian Academy of Sciences, Bangalore.
-
(1991)
Molecular Conformation and Biological Interactions
-
-
Toniolo, C.1
Benedetti, E.2
-
40
-
-
0027386832
-
Role of tight packing of hydrophobic groups in p-structure
-
Vtyurin, N. (1993). Role of tight packing of hydrophobic groups in p-structure. Proteins: Struct. Fund. Genet. 15, 62-70.
-
(1993)
Proteins: Struct. Fund. Genet.
, vol.15
, pp. 62-70
-
-
Vtyurin, N.1
-
41
-
-
0021757436
-
A new force field for molecular mechanical simulation of nucleic acids and proteins
-
Weiner, S. J., Kollman, P. A., Case, D., Singh, U. L., Chio, C., Alagona, G., Profeta, P. S. & Weiner, P. (1984). A new force field for molecular mechanical simulation of nucleic acids and proteins. J Amer. Chem. Soc. 106, 765-784.
-
(1984)
J Amer. Chem. Soc.
, vol.106
, pp. 765-784
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.3
Singh, U.L.4
Chio, C.5
Alagona, G.6
Profeta, P.S.7
Weiner, P.8
-
42
-
-
0028097921
-
The structure and function of proline-rich regions in proteins
-
Williamson, M. P. (1994). The structure and function of proline-rich regions in proteins. Biochem. J 297, 249-260.
-
(1994)
Biochem. J
, vol.297
, pp. 249-260
-
-
Williamson, M.P.1
-
43
-
-
0017435119
-
Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP
-
Zimmerman, S. S., Pottle, M. S., Nemethy, G. & Scheraga, H. A. (1977). Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP. Macromolecules, 101, 1-10.
-
(1977)
Macromolecules
, vol.101
, pp. 1-10
-
-
Zimmerman, S.S.1
Pottle, M.S.2
Nemethy, G.3
Scheraga, H.A.4
|