Cluster analysis of helicobacter pylori genomic DNA fingerprints suggests gastroduodenal disease-specific associations

Scandinavian Journal of Gastroenterology

Volumn 30, Issue 7, 1995, Pages 640-646

  Go, M F ^a,b   Chan, K Y ^a,b   Versalovic, J ^a,b   Koeuth, T ^a,b   Graham, D Y ^a,b   Lupski, J R ^a,b  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b TEXAS CHILDREN S HOSPITAL   (United States)

Author keywords

Cluster analysis; DNA fingerprint; Gastritis; Helicobacter pylori; Polymerase chain reaction; Ulcer

Indexed keywords

BACTERIAL DNA;

ADULT; AGED; ARTICLE; CLUSTER ANALYSIS; COMPUTER ANALYSIS; DNA FINGERPRINTING; DNA SEQUENCE; DUODENUM ULCER; FEMALE; GASTRITIS; GENE AMPLIFICATION; HELICOBACTER PYLORI; HUMAN; MAJOR CLINICAL STUDY; MALE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STRAIN DIFFERENCE;

ADULT; AGED; CLUSTER ANALYSIS; DNA FINGERPRINTING; DUODENAL ULCER; FEMALE; GASTRITIS; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMAN; MALE; MIDDLE AGE; POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0029078062     PISSN: 00365521     EISSN: None     Source Type: Journal    
DOI: 10.3109/00365529509096306     Document Type: Article

References (54)

1. Helicobacter pylori : its epidemiology and its role in duodenal ulcer disease
2. Helicobacter pylori : current status
3. Helicobacrer pylori and peptic ulceration: histopathological aspects
4. Helicobacter pylori -negative gastric ulcer
5. Campylobacter pylori and peptic ulcer disease
6. Helicobacter pylori infection and duodenal ulcer disease
7. Prevalence of Helicobacter pylori infection and histologic gastritis in asymptomatic persons
8. Effect of triple therapy (antibiotics plus bismuth) on duodenal ulcer healing
9. Cure of duodenal ulcer associated with eradication of Helicobacter pylori
10. Helicobacter pylori reinfection 4 years post-eradication [letter]
11. Effect of treatment of Helicobacter pylori infection on the long-term recurrence of gastric or duodenal ulcer. A randomized, controlled study
12. Recurrence of duodenal ulcer and Campylobacter pylori infection after eradication
13. Prospective double-blind trial of duodenal ulcer relapse after eradication of Campylobacter pylori
14. Campylobacter pylori and recurrence of duodenal ulcers—a 12–month follow-up study
15. Effect of ranitidine and amoxicillin plus metronidazole on the eradication of Helicobacter pylori and the recurrence of duodenal ulcer
16. Treatment of peptic ulcers caused by Helicobacter pylori
17. Biotypes and DNA fingerprints of cytotoxigenic Helicobacter pylori from patients with gastritis and peptic ulceration in Italy
18. Cytotoxin production by Campylobacter pylori strains isolated from patients with peptic ulcers and from patients with chronic gastritis only
19. Molecular characterization of the 128–kDa immunodominant antigen of Helicobacter pylori associated with cytotoxicity and duodenal ulcer
20. Characterization of and human serologic response to proteins in Helicobacrer pylori broth culture supernatants with vacuolizing cytotoxin activity
21. Cloning and expression of a high molecular mass major antigen of Helicobacter pylori : evidence of linkage to cytotoxin production
22. Conservation of genetic sequences for the vacuolating toxin among all Helicobacter pylori strains
23. Gene structure of the Helicobacter pylori cytotoxin and evidence of its key role in gastric disease
24. Genetic analysis of the Helicobacter pylori vacuolating cytotoxin: structural similarities with the IgA protease type of exported protein
25. Pathological significance and molecular characterization of the vacuolating toxin gene of Helicobacter pylori
26. Correlation between vacuolating cytotoxin production by Helicobacter pylori isolates in vitro and in vivo
27. DNA-DNA hybridization demonstrates apparent genetic differences between Helicobacter pylori from patients with duodenal ulcer and asymptomatic gastritis
28. Population genetics of pathogenic bacteria
29. DNA-based identification and epidemiologic typing of bacterial pathogens
30. Molecular epidemiology: application of contemporary techniques to the typing of microorganisms
31. Rapid fingerprinting of Helicobacter pylori by polymerase chain reaction and restriction fragment length polymorphism analysis
32. Use of polymerase chain reaction-amplified Helicobacter pylori urease structural genes for differentiation of isolates
33. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting
34. Identification of Campylobacter pyloridis isolates by restriction endonuclease DNA analysis
35. Restriction endonuclease analysis of the genome of Campylobacter pylori with a rapid extraction method: evidence for considerable genomic variation
36. Typing of Campylobacter pylori by bacterial DNA restriction endonuclease analysis and determination of plasmid profile
37. Deoxyribonucleic acid patterns of Helicobacter pylori isolated from gastric antrum, body, and duodenum
38. Construction of a Helicobacter pylori genome map and demonstration of diversity at the genome level
39. Use of DNA restriction endonuclease digest and ribosomal RNA gene probe patterns to fingerprint Helicobacter pylori and Helicobacter mustelae isolated from human and animal hosts
40. Short, interspersed repetitive DNA sequences in prokaryotic genomes
41. Higgins CF. Repetitive extragenic palindromic sequences: a major component of the bacterial genome
42. A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli
43. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
44. Analysis of relationships among isolates of Citrobacter diuersus by using DNA fingerprints generated by repetitive sequence-based primers in the polymerase chain reaction
45. Penicillin-resistant Streptococcus pneumoniae strains recovered in Houston: identification and molecular characterization of multiple clones
46. Development of species-specific DNA probes for Campylobacter jejuni, Campylobacter coli. and Campylobacter lari by polymerase chain reaction fingerprinting
47. Concordant clonal delineation of methicillin-resistant Staphylococcus aureus macrorestriction analysis and polymerase chain reaction genome fingerprinting
48. Typing of Legionella pneurnophila strains by polymerase chain reaction-mediated DNA fingerpriting
49. Genomic fingerprinting of bacteria using repetitive sequence based PCR (rep-PCR)
50. A complementation analysis of the restriction and modification of DNA in Escherichia coli
51. PCR-based RFLP analysis of DNA sequence diversity in the gastric pathogen Helicobacter pylori
52. Categorization of clinical isolates of Helicobacter pylori on the basis of restriction digest analyses of polymerase chain reaction-amplified ureC genes
53. Natural transformation of Campylobacter species