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Volumn 11, Issue 2, 1995, Pages 147-153

A local alignment tool for very long DNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; ESCHERICHIA COLI; PRIORITY JOURNAL;

EID: 0029064759     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/11.2.147     Document Type: Article
Times cited : (40)

References (20)
  • 2
    • 0027519504 scopus 로고
    • Analysis of the Escherichia coli genome IV. DNA sequence of the region from 89.2 to 92.8 minutes
    • Blattner, F.R., Burland, V.D., Plunkett, G., Sofia, HJ. and Daniels, D.L. (1993) Analysis of the Escherichia coli genome IV. DNA sequence of the region from 89.2 to 92.8 minutes. Nucleic Acids Res., 21, 5408-5417.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5408-5417
    • Blattner, F.R.1    Burland, V.D.2    Plunkett, G.3    Sofia, H.J.4    Daniels, D.L.5
  • 3
    • 0027210404 scopus 로고
    • DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: Organizational symmetry around the origin of replication
    • Burland, V., Plunkett, G., Daniels, D.L. and Blattner, F.R. (1993) DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Genomica, 16, 551-561.
    • (1993) Genomica , vol.16 , pp. 551-561
    • Burland, V.1    Plunkett, G.2    Daniels, D.L.3    Blattner, F.R.4
  • 4
    • 0029184821 scopus 로고
    • Linear-space algorithms that build local alignments from fragments
    • Chao, K.-M. and Miller, W. (1995) Linear-space algorithms that build local alignments from fragments. Algorithmica, 13, 106-134.
    • (1995) Algorithmica , vol.13 , pp. 106-134
    • Chao, K.M.1    Miller, W.2
  • 6
    • 0026754531 scopus 로고
    • Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes
    • Daniels, D.L., Plunkett, G., Burland, V. and Blattner, F.R. (1992) Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Science, 257, 771-778.
    • (1992) Science , vol.257 , pp. 771-778
    • Daniels, D.L.1    Plunkett, G.2    Burland, V.3    Blattner, F.R.4
  • 8
    • 0016518550 scopus 로고
    • A linear space algorithm for computing maximal common subsequences
    • Hirschberg, D.S. (1975) A linear space algorithm for computing maximal common subsequences. Common. Assoc. Comput. Mach., 18, 341-343.
    • (1975) Common. Assoc. Comput. Mach. , vol.18 , pp. 341-343
    • Hirschberg, D.S.1
  • 9
    • 0025043566 scopus 로고
    • A space-efficient algorithm for local similarities
    • Huang, X., Hardison, R.C. and Miller, W. (1990) A space-efficient algorithm for local similarities. Comput. Applic. Biosci., 6, 373-381.
    • (1990) Comput. Applic. Biosci. , vol.6 , pp. 373-381
    • Huang, X.1    Hardison, R.C.2    Miller, W.3
  • 10
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R. and Lipman, D. (1988) Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.2
  • 11
    • 0027219606 scopus 로고
    • Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes
    • Plunkett, G., Burland, V., Daniels, D.L. and Blattner, F.R. (1993) Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Nucleic Acids Res., 21, 3391-3398.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3391-3398
    • Plunkett, G.1    Burland, V.2    Daniels, D.L.3    Blattner, F.R.4
  • 12
    • 0025436383 scopus 로고
    • Skip lists: A probabilistic alternative to balanced trees
    • Pugh W (1990) Skip lists: a probabilistic alternative to balanced trees. Commun. Assoc. Comput. Mach., 33, 668-676.
    • (1990) Commun. Assoc. Comput. Mach. , vol.33 , pp. 668-676
    • Pugh, W.1
  • 13
    • 0039077700 scopus 로고
    • Maps, genes, sequences, and computers: An Escherichia coli case study
    • Rudd, K.E. (1993) Maps, genes, sequences, and computers: an Escherichia coli case study. ASM News, 59, 335-342.
    • (1993) ASM News , vol.59 , pp. 335-342
    • Rudd, K.E.1
  • 14
    • 0026891610 scopus 로고
    • A local algorithm for DNA sequence alignment with inversions
    • Sch8niger, M. and Waterman, M. (1992) A local algorithm for DNA sequence alignment with inversions. Bull. Math. Biol., 54, 521-536.
    • (1992) Bull. Math. Biol. , vol.54 , pp. 521-536
    • Sch8niger, M.1    Waterman, M.2
  • 15
    • 0019887799 scopus 로고
    • Identification of common molecular sequences
    • Smith, T.F. and Waterman, M.S. (1981) Identification of common molecular sequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 17
    • 0023661088 scopus 로고
    • A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons
    • Waterman, M.S. and Eggert, M. (1987) A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons. J. Mol. Biol., 197, 723-728.
    • (1987) J. Mol. Biol. , vol.197 , pp. 723-728
    • Waterman, M.S.1    Eggert, M.2
  • 18
    • 0020714456 scopus 로고
    • Rapid similarity searches of nucleic acid and protein data banks
    • Wilbur, W. and Lipman, D. (1983) Rapid similarity searches of nucleic acid and protein data banks. Proc. Natl. Acad. Sci. USA, 80, 726-730.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 726-730
    • Wilbur, W.1    Lipman, D.2
  • 19
    • 0021451172 scopus 로고
    • The context dependent comparison of biological sequences. SIAM
    • Wilbur, W. and Lipman, D. (1984) The context dependent comparison of biological sequences. SIAM J. Appl. Math., 44, 557-567.
    • (1984) J. Appl. Math. , vol.44 , pp. 557-567
    • Wilbur, W.1    Lipman, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.