Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA

Nucleic Acids Research

Volumn 23, Issue 11, 1995, Pages 1977-1983

  Schroth, Gary P ^a   Ho, P Shing ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CRUCIFORM DNA; REPETITIVE DNA;

ARTICLE; COMPUTER ANALYSIS; DNA CONFORMATION; DNA SEQUENCE; ESCHERICHIA COLI; HUMAN; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; TRIPLE HELIX; YEAST;

BASE SEQUENCE; COMPUTER SIMULATION; DNA; ESCHERICHIA COLI; GENOME, BACTERIAL; GENOME, FUNGAL; GENOME, HUMAN; HUMAN; MOLECULAR SEQUENCE DATA; REPETITIVE SEQUENCES, NUCLEIC ACID; SACCHAROMYCES CEREVISIAE; SUPPORT, NON-U.S. GOV'T;

EID: 0029036249     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/23.11.1977     Document Type: Article

References (47)

1. Sindenji.R. (1994). DNA Structure and Function. Academic Press, San Diego, CA.
2. Sinden. R.R. and Wells. R.D. (1992). Curr. Opin. Biotechnol., 3, 612-622.
3. Rkhi. (1993). Gene, 135, 99-109.
4. Murchie, A.I.H., Bowater.R., Aboul-ela and Lilley, D.MJ. (1992). Biochim. Biophys. Acta, 1131, 1-15.
5. Mirkin, S.M. and Frank-Kamenetskii AI D. (1994). Annu. Rev. Biophys. BiomoL Struct., 23, 541-576.
6. Palecek K. (1991). Crit. Rev. Biochem. Mol Biol., 26, 151-226.
7. Lilley.D.MJ. (1980). Proc. NatL Acad ScL USA, Tl, 6468-6472.
8. Panayotatos, N. and Wells, R.D. (1981). Nature, 289, 466-470.
9. Mirkin. S.M., Lyamichev.V.I., Drushlyak, K.N., Dobrynin, V.N., Filippov.S.A. and Frank-Kamenetskii, M.D. (1987). Nature, 330, 495-497.
10. Johnston H. (1988). Science, 241, 1800-1804.
11. Hanvey J.C., Shimuzu, M. and Wells.R.D. (1988). Proc. NatL Acad ScL USA, 85, 6292-6296.
12. Htun.H. and Dahlberg J.E. (1989). Science, 243, 1571-1576.
13. Manorji., Rao S. and Martin.R.G. (1988). J. Mol Evol., 27, 96-101.
14. Hamada, H., Petrino, M.G. and Kakunaga, T. (1982). Proc. NatL Acad. ScL USA, 79, 6465-6469.
15. Haniford.D.B. and Pulleyblank JD.E. (1983). Nature, 302, 714-716.
16. Trifonov JE-N, Konopka VK and Jovint M (1985). FEBS Lett., 185, 197-202.
17. Gross JD.S. and Garrard, W.T. (1986). Mol Cell Biol., 6, 3010-3013.
18. Greaves J.J. Palienu R.K. and LiUey X.M.J. (1985). J. Mol Biol, 185, 461-478.
19. Tripathi J. and Brahmachari.S.K. (1991). J. BiomoL Struct. Dynam., 9, 387-397.
20. Wells. R.D., Collier JD.A., Hanvey J.C., Shimuzu M. and Wohlrah J. (1988). FASEBJ., 2, 2939-2949.
21. Lu, G. and Fert JU. (1993). Int. J. Biochem., 25, 1529-1537.
22. Schroth. G.P., Chou, P.-J. and Ho, P.S. (1992). J. BioL Chem., 267, 11846-11855.
23. Oliver, S.G. et al. (1992). Nature, 357, 38-46.
24. Daniels J.L., Plunkett, G., Burland, V. and Blattner J.R. (1992). Science, 257, 771-778.
25. Plunkett, G., Burland, V., Daniels.D.L. and Blattner J.R. (1993). Nucleic Acids Res., 21, 3391-3398.
26. Burland, V., Plunkett, G., Daniels.D.L. and Blattner, F.R. (1993) Genomics, 16, 551-561.
27. Muichie A.I.H. and Lilley, D.M.J. (1992). Methods Enzymol., 211, 158-180.
28. Zheng, G., Kochel, T., Hoepfner.R.W., Timmons, S.E. and Sinden H.R. J. Mol Biol, 221, 107-129.
29. Lyamichev. VX, Mirkin.S.M., Kumarev.V.P., Baranova X-V., Fologodskii, A.V. and Frank-Kamenetskii J.D. (1989). Nucleic Acids Res., 17, 9417-9423.
30. Kohwi-Shigematsu, T. and Kohwi, Y. (1991) Nucleic Acids Res., 19, 4267-4271.
31. Gough, G.W., Sullivan, K-M. and Lilley J.D.MJ. (1986). EM BO J., 5, 191-196.
32. Shimuzujvi, Hanvey J.C. and Wells, RD. (1989). J. BioL Chem., 264, 5944-5949.
33. Courey J. and WangJ.C. (1988). J. Mol Biol., 202, 35-43.
34. Zheng, G. and Sindenji.R. (1988). J. BioL Chem., 263, 5356-5361.
35. Singleton, C.K. (1983). J. BioL Chem., 258, 7661-7668.
36. Hanvey J.C., KlysikJ. and Wells.R.D. (1988). J. BioL Chem., 263, 7386-7396.
37. Hanvey J.C., Shimuzujvl. and Wells.R.D. (1989). J. BioL Chem., 264, 5950-5956.
38. Fox JCR. (1990). Nucleic Acids Res 18, 5387-5391.
39. Spiro, C., Richards J.P., Chandrasekaran.C., Brennan, R.G. and McMurray.C.T. (1993). Proc. NatL Acad ScL USA, 90, 4606-4610.
40. Famham J.J. and Platt, T. (1980). Cell, 20, 739-746.
41. McLean, MJ. and Wells, R.D. (1988). J. BioL Chem., 263, 7370-7377.
42. Blaho J.A., Larson J.E., McLean, MJ. and Wells.R.D. (1988). J. BioL Chem., 263, 14446-14455.
43. Liu X F. and WangJ.C. (1987). Prvc. NatL Acad Sci. USA, 84, 7024-7027.
44. Freeman, L. A. and Garrard, W.T. (1992). Crit. Rev. Eukaryot Gene Expression, 2, 165-209.
45. Droge.P. (1994). BioEssays, 16, 91-99.
46. van Holde.K. and ZlatanovaJ. (1994). BioEssays, 16, 59-68.
47. Wittigs., Wolfl.S., Dortric, T., Vahrson.W. and Richi. (1992). EM BO J., 11, 4653-4663.