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Volumn 248, Issue 2, 1995, Pages 459-477

A geometry-based suite of moleculardocking processes

Author keywords

Docking of bound and unbound complexes; Molecular docking; Molecular surface matching; Protein drug docking; Protein protein docking

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; CRYSTAL; ENERGY; FILTER; GEOMETRY; METHODOLOGY; MOLECULAR DYNAMICS; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; SCORING SYSTEM;

EID: 0029025913     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(95)80063-8     Document Type: Article
Times cited : (172)

References (25)
  • 1
    • 0027238108 scopus 로고
    • A Computer Vision based technique for 3-D sequence independent structural comparison of proteins
    • Bachar, O., Fischer, D., Nussinov, R. & Wolfson, H. J. (1993). A Computer Vision based technique for 3-D sequence independent structural comparison of proteins. Protein Eng. 6, 279-288.
    • (1993) Protein Eng , vol.6 , pp. 279-288
    • Bachar, O.1    Fischer, D.2    Nussinov, R.3    Wolfson, H.J.4
  • 2
    • 0026642968 scopus 로고
    • Docking by least-squares fitting of molecular surface patterns
    • Bacon, D. J. & Moult, J. (1992). Docking by least-squares fitting of molecular surface patterns. J. Mol. Biol. 225, 849-858.
    • (1992) J. Mol. Biol. , vol.225 , pp. 849-858
    • Bacon, D.J.1    Moult, J.2
  • 6
    • 0027530108 scopus 로고
    • Protein docking algorithms: Simulating molecular recognition
    • Cherfils, J. & Janin, J. (1993). Protein docking algorithms: simulating molecular recognition. Curr. Opin. Struct. Biol. 3, 265-269.
    • (1993) Curr. Opin. Struct. Biol. , vol.3 , pp. 265-269
    • Cherfils, J.1    Janin, J.2
  • 8
    • 0000538815 scopus 로고
    • Analytical molecular surface calculation
    • Connolly, M. L. (1983). Analytical molecular surface calculation. J. Appl. Crystallogr. 16, 548-558.
    • (1983) J. Appl. Crystallogr. , vol.16 , pp. 548-558
    • Connolly, M.L.1
  • 9
    • 0022744127 scopus 로고
    • Shape complementarity at the hemoglobin otiP, subunit interface
    • Connolly, M. L. (1986). Shape complementarity at the hemoglobin otiP, subunit interface. Biopolymers, 25, 1229-1247.
    • (1986) Biopolymers , vol.25 , pp. 1229-1247
    • Connolly, M.L.1
  • 11
    • 0028230909 scopus 로고
    • 3-D, sequence-order independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: Potential implications to evolution and to protein folding
    • Fischer, D., Wolfson, H. J., Lin, S. L. & Nussinov, R. (1994). 3-D, sequence-order independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: potential implications to evolution and to protein folding. Protein Sci. 3, 769-778.
    • (1994) Protein Sci , vol.3 , pp. 769-778
    • Fischer, D.1    Wolfson, H.J.2    Lin, S.L.3    Nussinov, R.4
  • 12
    • 0025123333 scopus 로고
    • The structure of protein-protein recognition sites
    • Janin, J. & Chothia, C. (1990). The structure of protein-protein recognition sites. J. Biol. Chem. 265, 16027-16030.
    • (1990) J. Biol. Chem. , vol.265 , pp. 16027-16030
    • Janin, J.1    Chothia, C.2
  • 13
    • 0026310932 scopus 로고
    • "Soft docking": Matching of molecular surface cubes
    • Jiang, F. & Kim, S.-H. (1991). "Soft docking": matching of molecular surface cubes. J Mol. Biol. 219, 79-102.
    • (1991) J Mol. Biol , vol.219 , pp. 79-102
    • Jiang, F.1    Kim, S.-H.2
  • 14
    • 0026572775 scopus 로고
    • Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques
    • Katchalski-Katzir, E., Shariv, I., Eisenstein, M., Friesem, A. A., Aflalo, C. & Vakser, I. A. (1992). Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques. Proc. Natl Acad. Sci., U.S.A. 89, 2195-2199.
    • (1992) Proc. Natl Acad. Sci., U.S.A. , vol.89 , pp. 2195-2199
    • Katchalski-Katzir, E.1    Shariv, I.2    Eisenstein, M.3    Friesem, A.A.4    Aflalo, C.5    Vakser, I.A.6
  • 15
    • 0015222647 scopus 로고
    • Solvent accessibility of groups in proteins
    • Lee, B. & Richards, F. M. (1971). Solvent accessibility of groups in proteins. J. Mol. Biol. 55, 379-400.
    • (1971) J. Mol. Biol. , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 17
    • 0028079323 scopus 로고
    • Molecular surface recognition by a Computer Vision based technique
    • Norel, R., Fischer, D., Wolfson, H. J. & Nussinov, R. (1994a). Molecular surface recognition by a Computer Vision based technique. Protein Eng. 7, 39-46.
    • (1994) Protein Eng , vol.7 , pp. 39-46
    • Norel, R.1    Fischer, D.2    Wolfson, H.J.3    Nussinov, R.4
  • 18
    • 0028166881 scopus 로고
    • Shape complementarity at protein-protein interfaces
    • Norel, R., Lin, S. L., Wolfson, H. J. & Nussinov, R. (1994b). Shape complementarity at protein-protein interfaces. Biopolymers, 39, 933-940.
    • (1994) Biopolymers , vol.39 , pp. 933-940
    • Norel, R.1    Lin, S.L.2    Wolfson, H.J.3    Nussinov, R.4
  • 19
    • 0025719208 scopus 로고
    • Efficient detection of three-dimensional structural motifs in biological macromolecules by Computer Vision techniques
    • Nussinov, R. & Wolfson, H. J. (1991). Efficient detection of three-dimensional structural motifs in biological macromolecules by Computer Vision techniques. Proc. Natl Acad. Sci., U.S.A. 88, 10495-10499.
    • (1991) Proc. Natl Acad. Sci., U.S.A. , vol.88 , pp. 10495-10499
    • Nussinov, R.1    Wolfson, H.J.2
  • 20
    • 0027516008 scopus 로고
    • Computer simulation of antibody binding specificity
    • Pellegrini, M. & Doniach, S. (1993). Computer simulation of antibody binding specificity. Proteins: Struct. Fund. Genet. 15, 436-444.
    • (1993) Proteins: Struct. Fund. Genet. , vol.15 , pp. 436-444
    • Pellegrini, M.1    Doniach, S.2
  • 21
    • 0017429069 scopus 로고
    • Areas, volumes, packing and protein structure
    • Richards, F. M. (1977). Areas, volumes, packing and protein structure. Annu. Rev. Biophys. Bioeng. 6, 151-176.
    • (1977) Annu. Rev. Biophys. Bioeng. , vol.6 , pp. 151-176
    • Richards, F.M.1
  • 23
    • 0025785057 scopus 로고
    • Protein docking and complementarity
    • Shoichet, B. K. & Kuntz, I. D. (1991). Protein docking and complementarity. J. Mol. Biol. 221, 79-102.
    • (1991) J. Mol. Biol. , vol.221 , pp. 79-102
    • Shoichet, B.K.1    Kuntz, I.D.2
  • 24
    • 0026464639 scopus 로고
    • New algorithm to model protein-protein recognition based on surface complementarity, applications to antibody-antigen docking
    • Walls, P. H. & Sternberg, J. E. (1992). New algorithm to model protein-protein recognition based on surface complementarity, applications to antibody-antigen docking. J. Mol. Biol. 228, 227-297.
    • (1992) J. Mol. Biol. , vol.228 , pp. 227-297
    • Walls, P.H.1    Sternberg, J.E.2
  • 25
    • 84986532964 scopus 로고
    • Grid-search molecular accessible surface algorithm for solving the protein docking problem
    • Wang, H. (1991). Grid-search molecular accessible surface algorithm for solving the protein docking problem. J. Comp. Chem. 12, 746-750.
    • (1991) J. Comp. Chem. , vol.12 , pp. 746-750
    • Wang, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.