Solution structure of a DNA hairpin and its disulfide cross-linked analog

Nucleic Acids Research

Volumn 23, Issue 12, 1995, Pages 2153-2160

  Cain, Robert J ^a   Zuiderweg, Erik R P ^b   Glick, Gary D ^a,b  

^a Department of Chemistry ^*  (United States)

^b UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PHOSPHORUS; PROTON;

ARTICLE; DISULFIDE BOND; DNA CONFORMATION; DNA CROSS LINKING; DNA SEQUENCE; DNA STRUCTURE; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL;

COLICINS; CROSS-LINKING REAGENTS; DISULFIDES; DNA, BACTERIAL; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; SOLUTIONS; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0029012479     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/23.12.2153     Document Type: Article

References (55)

1. Cohen, L.F Ewig, R.A.G., Kohn, K.W, and Glaubiger, D (1980)Biochim Biophys. Acta,610,56-63.
2. WebbT.R, and Matteucci, M.D.,(1986)J.Am. Chem Soc.,108,2764-2765
3. Leonand, N.J. And Devadas, B. (1987) J.Am. Chem Soc.,109, 623-625.
4. Pieles, U., Sproat, B.S., Neuner, P., and Cramer, F. (1989)Nucleic Acids Res.,17,8967-8978.
5. Millard, J.T, Rancher, S. And Hopkins, P.B. (1990)J. Am. Chem. Soc.,112,2459-2460.
6. Lemaire, M.-A., Schwartz A., Rahmouni, A.R. And Leng, M. (1991)Proc. Natl Acad. Scl USA,88,1982-1985.
7. Cowaru, M. And Benkovic, S.J. (1991)Biochemistry,30,788-796.
8. Millard J.T., Weidner, M.F., Kirchner J.J., Ribeiio, S. And Hopkins, P.B. (1991)Nucleic Acids Res.,19,1885-1891.
9. Kirchner, J.J. And Hopkins, P.B. (1991)J. Am. Chem Soc.,113,4681-4682.
10. Huang, J.L, Solomon, M.S. And Hopkins, P.B. (1992)J. Am Chem Soc.,114,9240-9241.
11. Kirchner, J.J., Sigurdsson, S.T. And Hopkins P.B (1992)J. Am Chem Soc.,114,4021-4027.
12. Sigurdsson, S.T., Rink, S.M. And Hopkins, P.B. (1993)J. Am Chem Soc.,115,12633-12634.
13. Boger, J.J.L. And YunW. (1993)J. Am Chem Soc.,115,9872-9873.
14. Millard, J.T. And White, M.M. (1993)Biochemistry,115, 2120-2124.
15. Shi, Y.-b., Gamper, H. And Hearst, J.E., (1988)J. Biol Chem,263,527-534.
16. Pinto, A-L. And Lippard, S J. (1985)Biochem Biophys. Acta,780,167-180.
17. Tomasz, M., Lipman, R., Chowdary, D., Pawlak, J., Verdine, G.L. And Nakanishi, K. (1987)Science,235, 1204-1208.
18. Teng, S.P., Woodson, S.A. And Crothers, D.M. (1989)Biochemistry,28,3901-3907.
19. Borowy-Borowski, H., Lipman, R. And Tomasz, M. (1990)Biochemistry,29, 2999-3006.
20. Fercntz, A.E. And Vendine, G.L. (1991) J.Am Chem Soc.,113,4000-4002.
21. Glick, G.D. (1991) J.Org. Chem,56,6746-6747.
22. Glick, G.D., Osborne, S.E., Knitt, D.S. And Marino, J.P. Jr (1992)J. Am Chem Soc.,114,5447-5448.
23. Ferentz, A.E., Keating, T.A and Verdine, G.L. (1993) J.Am Chem Soc.,115, 9006-9014 and references therein.
24. Erlanson, D.A., Chen, L. And Verdine, G.L. (1993)J. Am Chem Soc.,115,12583-12584.
25. Milton, J., Connolly, B.A., Nikiforov, T.T. And Cosstick, R. (1993)J. Chem Soc., Chem Commun.,779-780.
26. Goodwin, J.T. And Glick, G.D. (1994)Tetrahedron Lett.,35,1647-1650.
27. Goodwin, J.T., Osborne, S.E., Swanson, P.C. And Glick, G.D., (1994)Tetrahedron Lett.,35,4527-4531.
28. Blatu N.B., Osbome, S.E., Cain, J.L.J. And Glick, G.D. (1993)Biochimie,75, 433-441.
29. Swanson P.C and Glick, G.D (1993)BioMcd, Chem Lett.,3, 2117-2118.
30. Swanson, P.C, Cooper, B.C. And Glick, G.D., (1994)J. Immunol.,152,2601-2612.
31. Tomic, M.T., Wemmer, D.E. And Kim, S.-H. (1987)Science,238,1722-1725.
32. Marion, D. And WUthnch, K. (1983)Biochem Biophys. Res. Commun.,113,967-974.
33. States, D.J., Haberkom, R.A. And Ruben, D.J. (1982)J. Magn. Reson.,48,286-292.
34. Marion, D., Mitsuhiko, J. And Bax, A- (1989)J. Magn. Reson.,84,425-430.
35. Emst, R.R., Bodenhausen, G. And Wokaun, A- (1987)Principles of Nuclear Magnetic Resonance in One and Two Dimensions.Oxford University Press, NY.
36. Piantini, U., Sorensen, O.W. And Emst, R.R. (1982)J. Am Chem Soc.,104,6800-6801
37. Braunschweiler, J- and Emst, R.R- (1983)J. Magn. Reson.,53,521-528.
38. Rance, M (1987)J. Magn. Reson.,74,557-564.
39. Levitt, M.H., Free man, R. And Frenkiel, T. (1982)J. Magn. Reson.,47,328-330.
40. Griesinger, C., Otting, G., Wtithrich, K. And Emst, R.R. (1988)J. Am Chem Soc.,110,7870-7872.
41. Sklenâf, V., Miyashiro, H., Zon, G Miles, H.T. And Bax, A- (1986)FEBS Lett.,208,94-98.
42. Plaleau, P, and Guéron, M. (1982)J.Am Chem Soc.,104,7310-7311.
43. Griesinger, C., Sprensen, O.W. And Emst, R.R. (1985) J.Am Chem Soc.,107,6394-6396.
44. Sklenâf, V. And Bax, A. (1987) J.Am Chem Soc.,109,7525-7526.
45. Titman, J J. And Keeler, J. (1990) J.Magn. Reson.,89,640-646.
46. Holak, T. A., Scarsdale J.N. And Prestegard J.H. (1987) J.Magn. Reson.,74,546-549.
47. Denk, W. Baumann, R and Wagner, G. (1986) J.Magic Reson.,67,386-390.
48. Reid, B.R, Banks, K., Flynn, P. And Nerdal, W. (1989)Biochemistry,28,10001-10007.
49. Saenger, W. (1984)Principals of Nucleic Acid Structure.Springer-Verlag, Berlin.
50. Wuthrich, K. (1986)NMR of Proteins and Nucleic Acids.John Wiley &Son, NY.
51. Gorenstein, D.G. (1994)Chem Rev.,94,1315-1338
52. Hilbers, C.W., Heus, H.A., van Dongen, M.J.P. And Wijmenga, S.S. (1994) In Eckstein F, and Lilley.D.M J. (Eds), Nucleic Acids and Molecular Biology.Springer-Verlag, Berlin. Vol. 8, pp. 56-104.
53. Wang, J.L, Zuiderweg, E.R.P. And Glick, G.D. (1995) J.Am Chem Soc., in press.
54. Weiner, S.J., Kollman, P.A., Case, D.A., Singh, U.C., Ghio, C., Alagona, G., Profeta, S. Jr and Weiner, P (1984) J.Am Chem Soc.,106,. 765-784
55. Weiner, S.J., Kollman, P.A., Nguyen, D.T. And Case, D.A. (1986) J.Comp. Chem.,7,230-252.