Pseudouridine and O2-methylated nucleosides. Significance of their selective occurrence in rRNA domains that function in ribosome-catalyzed synthesis of the peptide bonds in proteins

Biochimie

Volumn 77, Issue 1-2, 1995, Pages 7-15

  Lane, B G ^a   Ofengand, J ^b   Gray, M W ^c  

^a UNIVERSITY OF TORONTO   (Canada)

^b HOFFMANN LA ROCHE INC   (United States)

^c DALHOUSIE UNIVERSITY   (Canada)

Author keywords

catalytic rRNA; modified nucleosides; protein biosynthesis; pseudouridine

Indexed keywords

PSEUDOURIDINE; RIBONUCLEOSIDE; RIBOSOME RNA; RIBOZYME; SMALL NUCLEAR RNA; TRANSFER RNA; NUCLEOSIDE;

CHEMISTRY; EVOLUTION; METABOLISM; METHYLATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PEPTIDE SYNTHESIS; REVIEW; RIBOSOME; ARCHAEBACTERIUM; CONFERENCE PAPER; COVALENT BOND; EUBACTERIUM; EUKARYOTE; ISOMERISM; MOLECULAR DYNAMICS; NONHUMAN; PROTEIN SYNTHESIS; RNA METHYLATION; STEREOCHEMISTRY;

BASE SEQUENCE; EVOLUTION; METHYLATION; MOLECULAR SEQUENCE DATA; PEPTIDE SYNTHESIS; PSEUDOURIDINE; RIBONUCLEOSIDES; RIBOSOMES; RNA, CATALYTIC; RNA, RIBOSOMAL; RNA, SMALL NUCLEAR; RNA, TRANSFER; SUPPORT, NON-U.S. GOV'T;

EID: 0028988343     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/0300-9084(96)88098-9     Document Type: Article

References (108)

1. Nucleoside-5′-phosphates from ribonucleic acid
2. 5-Ribosyluracil, a carbon-carbon ribofuranosyl nucleoside in ribonucleic acids
3. Pseudouridine, a carbon-carbon linked ribonucleoside in ribonucleic acids: isolation, structure, and chemical characteristics
4. Studies on an isomer of uridine isolated from ribonucleic acids
5. Methylation studies on various uracil derivatives and of an isomer of uridine isolated from ribonucleic acids
6. Ribonucleic acids from yeast which contain a fifth nucleotide
7. The occurrence of methylated guanines in ribonucleic acids from several sources
8. An additional sugar component of ribonucleic acids
9. The characteristic alkali-stable dinucleotide sequences in each of the 16S and 23S components of ribosomal ribonucleates from Escherichia coli
10. 2-methylribonucleoside content of ribonucleic acids
11. The isolation from ribonucleic acid of substituted uridines containing α-aminobutyrate moieties derived from methionine
12. Presence of a hypermodified nucleotide in HeLa cell 18S and Saccharomyces carlsbergensis 17S ribosomal RNAs
13. Posttranscriptional modification of tRNA in thermophilic archaea (archaebacteria)
14. 2-methylpseudouridine in the 18S + 26S ribosomal ribonucleates of wheat embryo
15. The puromycin reaction and its relation to protein synthesis
16. Ribosome-catalyzed peptidyl transfer: the polyphenylalanine system
17. New horizons for RNA catalysis
18. Aminoacetylesterase activity of the Tetrahymena ribozyme
19. Pseudouridine in the large-subunit (23S-like) ribosomal RNA The site of peptidyl transfer in the ribosome?
20. Labile acetylated uracil derivatives
21. On the role of soluble ribonucleic acid in coding for amino acids
22. Structure of a ribonucleic acid
23. Nucleotide composition of soluble ribonucleic acid from Escherichia coli
24. The alkali-stable dinucleotide sequences and the chain termini in soluble ribonucleates from wheat germ
25. Terminal residues of wheat germ ribonucleates
26. Studies on the ribonucleic acid from soluble and particulate fractions of plant leaves
27. The alkali-stablei trinucleotide sequences and the chain termini in 18S + 26S ribonucleates from wheat germ
28. 4-methyl-2′-O-methyl cytidine and other methyl-substituted nucleoside constituents of Escherichia coli ribosomal and soluble RNA
29. The ribosomal RNA of the trypanosomatid protozoan Crithidia fasciculata: physical characteristics and methylated sequences
30. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique
31. Clustering of pseudouridylic acid residues in large subunit ribosomal RNAs
32. Cross-linking of the anticodon of Escherichia coli and Bacillus subtilis acetylvalyl-tRNA to the ribosomal P site. Characterization of a unique site in both E coli 16S and yeast 18S ribosomal RNA
33. Interaction between the two conserved single-stranded regions at the decoding site of small subunit ribosomal RNA is essential for ribosome function
34. In vivo incorporation of methyl groups into the ribose of Escherichia coli ribosomal RNA
35. The single pseudouridine residue in E coli 16S RNA is located at position 516
36. The 530 loop of 16S rRNA: a signal to EF-Tu?
37. Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16S RNA
38. Functions of the abundant U-snRNPs
39. U snRNA's of nuclear snRNP's
40. Nucleotide sequences of nuclear UIA RNAs from chicken, rat and man
41. A UI snRNA:pre-mRNA base pairing interaction is required early in yeast spliceosome assembly but does not uniquely define the 5′ cleavage site
42. Properties of pseudouridine N1 imino protons located in the major groove of an A-form RNA duplex
43. Sixteen discrete RNA components in the cytoplasmic ribosome of Euglena gracilis
44. In vitro biosynthesis of pseudouridine at the polynucleotide level by an enzyme extract from Escherichia coli
45. Clustering of pseudouridine residues around the peptidyl transferase center of yeast cytoplasmic and mitochondrial ribosomes
46. The biochemistry of pseudouridine
47. The methylation of nucleic acids
48. 2-methylation of RNA in the ribonucleoprotein precursor-particles from a relaxed mutant of Escherichia coli
49. 2-methylation of sugars in E. coli RNA. II. Methylation of ribosomal and transfer RNA by homologous methylases in crude cell-free extracts and particulate suspensions from a relaxed mutant of E. coli
50. Biosynthesis of pseudouridine in transfer ribonucleic acid
51. Pseudouridylation of tRNAs and its role in regulation in Salmonella typhimurium
52. lyr genes
53. Purification of pseudouridylate synthetase I from Salmonella typhimurium
54. Transfer RNA pseudouridine synthases in Saccharomyces cerevisiae
55. Purification, structure, and properties of Escherichia coli tRNA synthase 1
56. Biosynthesis of pseudouridylate residues in E. coli 23S ribosomal RNA
57. Pseudouridine formation in U2 small nuclear RNA
58. The relation of the interaction of polynucleotides to the secondary structure of nucleic acids
59. Polynucleotide analogues III. Polypseudouridylic acid: synthesis and some physicochemical and biochemical properties
60. Conformational properties of polyformycin: a polyribonucleotide with individual residues in the syn conformation
61. The isolation, identification and properties of dinucleotides from alkali hydrolyzates of ribonucleic acids
62. The chain termini of polynucleotides formed by limited enzymic fragmentation of wheat embryo ribosomal RNA. Part 1. Studies of snake venom phosphodiesterase
63. The hydrolysis of ‘soluble’ ribonucleic acid by snake venom phosphodieslyase
64. Possible structures for transfer ribonucleic acid: a triple-stranded model
65. On the ionization constant of 5-ribosyluracil
66. Spectrophotometric studies of nucleic acid derivatives and related compounds as a function of pH II. Natural and synthetic pyrimidine nucleosides
67. Compilation of SS rRNA and 5S rRNA gene sequences
68. Sequences in the 3′-terminal coding regions of 5S and 18S rRNA genes may contribute to co-ordinated expression of 5S rRNA and pre(18S/5.8S/26S) rRNA genes
69. On protein synthesis
70. Nucleotide-amino acid complexes in alkaline digests of ribonucleic acid
71. PMR-relaxation and steric computations give unequivocal nucleoside conformations
72. Pseudouridylic acid in ribosomal RNA: location and biosynthesis
73. Clustering of modified nucleotides at the functional center of bacterial ribosomal RNA
74. Molecular mechanisms of the ribosomal peptidyltransferase center
75. Genes for mammalian mitoribosomal proteins
76. Phe and general structural features of other tRNAs
77. The methylated nucleotide sequences in HeLa cell ribosomal RNA and its precursors
78. Secondary methylation of yeast ribosomal precursor RNA
79. The relationship of nucleic acid and protein synthesis as revealed by studies in cell-free systems
80. Studies of the sequence distribution of 2′-O-methylribose in yeast soluble ribonucleates
81. Evidence for the occurrence of a common pentanucleotide sequence in the structures of transfer ribonucleic acids
82. Transfer RNA modification
83. Transfer ribonucleic acid from Mycoplasma
84. Functional requirement of a site-specific ribose methylation in ribosomal RNA
85. Absence of hisT-mediated tRNA pseudoridylation results in a uracil requirement that interferes with Escherichia coli K-12 cell division
86. Total reconstitution of functionally active 50S ribosomal subunits from Escherichia coli
87. Phe. Double resonance and two-dimensional NMR of N1-labeled pseudouridine
88. The wheat embryo, then and now
89. Properties of transfer RNA lacking modified nucleosides
90. Role of tRNA modification in translational fidelity
91. Guanosine modifications in runoff transcripts of synthetic transfer RNA-Phe genes microinjected into Xenopus oocytes
92. Ine is requierd for UAG and UAA suppression in the TMV-specific context
93. The mechanism of aminoacylation of transfer RNA
94. Ser complex
95. Phe: role of reverse transcriptase
96. Ser
97. Relaxation of a transfer RNA specificity by removal of modified nucleotides
98. Probing structural differences between native and in vitro transcribed Escherichia coli valine transfer RNA: evidence for stable base modification-dependent conformers
99. Phe to avian myeloblastosis virus reverse transcriptase
100. Statistical correlation of protein and ribonucleic acid composition
101. U2 small nuclear RNP assembly in vitro
102. Sparsomycin
103. The primary structure of tRNAs and their rare nucleosides
104. The numerous modified nucleotides in eukaryotic ribosomal RNA
105. Metabolic generation and utilization of phosphatic bond energy
106. Evidence for several higher order structural elements in ribosomal RNA
107. Collection of small subunit (16S- and 16S-like) ribosomal RNA structures