-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Myers, E.W.3
Lipman, D.J.4
-
2
-
-
0020024572
-
Codon selection in yeast
-
Bennetzen, J. L. & Hall, B. D. (1982). Codon selection in yeast. J. Biol. Chem. 257, 3026-3031.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 3026-3031
-
-
Bennetzen, J.L.1
Hall, B.D.2
-
3
-
-
0024805395
-
The isochore organization of the human genome
-
Bernardi, G. (1989). The isochore organization of the human genome. Annu. Rev. Genet. 23, 637-661.
-
(1989)
Annu. Rev. Genet.
, vol.23
, pp. 637-661
-
-
Bernardi, G.1
-
4
-
-
0024284119
-
Objective comparison of exon and intron sequences by the means of 2-dimensional data analysis methods
-
Bougueleret, L., Tekaia, F., Sauvaget, I. & Claverie, J.-M. (1988). Objective comparison of exon and intron sequences by the means of 2-dimensional data analysis methods. Nucl. Acids Res. 16, 1729-1738.
-
(1988)
Nucl. Acids Res.
, vol.16
, pp. 1729-1738
-
-
Bougueleret, L.1
Tekaia, F.2
Sauvaget, I.3
Claverie, J.-M.4
-
5
-
-
0017727356
-
A method for segmenting acoustic patterns, with application to automatic speech recognition
-
Bridle, J. S. & Sedgwick, N. C. (1977). A method for segmenting acoustic patterns, with application to automatic speech recognition. Proc. IEEE Int. Conf. Acoust., Speech, Signal Processing, 27, 656-659.
-
(1977)
Proc. IEEE Int. Conf. Acoust., Speech, Signal Processing
, vol.27
, pp. 656-659
-
-
Bridle, J.S.1
Sedgwick, N.C.2
-
6
-
-
0025744474
-
Prediction of human mRNA donor and acceptor sites from the DNA sequence
-
Brunak, S., Engelbrecht, J. &Knudsen, S. (1991). Prediction of human mRNA donor and acceptor sites from the DNA sequence. J. Mol. Biol. 220, 49-65.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 49-65
-
-
Brunak, S.1
Engelbrecht, J.2
Knudsen, S.3
-
7
-
-
0023045765
-
Heuristic informational analysis of sequences
-
Claverie, J.-M. & Bougueleret, L. (1986). Heuristic informational analysis of sequences. Nucl. Acids Res. 14, 179-196.
-
(1986)
Nucl. Acids Res.
, vol.14
, pp. 179-196
-
-
Claverie, J.-M.1
Bougueleret, L.2
-
8
-
-
0001282761
-
Informational enhancement methods for large scale sequence analysis
-
Claverie, J.-M. & States, D. J. (1993). Informational enhancement methods for large scale sequence analysis. Comp. Chem. 17, 191-201.
-
(1993)
Comp. Chem.
, vol.17
, pp. 191-201
-
-
Claverie, J.-M.1
States, D.J.2
-
9
-
-
0025317956
-
K-Tuple frequency analysis from intron/exon discrimination to T-cell epitope mapping
-
Claverie, J.-M., Sauvaget, I. & Bougueleret, L. (1990). k-Tuple frequency analysis from intron/exon discrimination to T-cell epitope mapping. Methods Enzymol. 183, 237-252.
-
(1990)
Methods Enzymol
, vol.183
, pp. 237-252
-
-
Claverie, J.-M.1
Sauvaget, I.2
Bougueleret, L.3
-
10
-
-
0019572151
-
Segmenting speech using dynamic programming
-
Cohen, J. R. (1981). Segmenting speech using dynamic programming. J. Acoust. Soc. Amer. 69, 1430-1438.
-
(1981)
J. Acoust. Soc. Amer.
, vol.69
, pp. 1430-1438
-
-
Cohen, J.R.1
-
11
-
-
0027944162
-
Gene structure prediction by linguistic methods
-
Dong, S. & Searls, D. B. (1994). Gene structure prediction by linguistic methods. Genomics, 23, 540-551.
-
(1994)
Genomics
, vol.23
, pp. 540-551
-
-
Dong, S.1
Searls, D.B.2
-
12
-
-
0027059264
-
Assessment of protein coding measures
-
Fickett, J. W. & Tung, C.-S. (1992). Assessment of protein coding measures. Nucl. Acids Res. 20, 6441-6450.
-
(1992)
Nucl. Acids Res.
, vol.20
, pp. 6441-6450
-
-
Fickett, J.W.1
Tung, C.-S.2
-
13
-
-
0025040574
-
Gm: A practical tool for automating DNA sequence analysis
-
Fields, C. A. &Soderlund, C. A. (1990). Gm: a practical tool for automating DNA sequence analysis. Comput. Appl. Biol. Sci. 6, 263-270.
-
(1990)
Comput. Appl. Biol. Sci.
, vol.6
, pp. 263-270
-
-
Fields, C.A.1
Soderlund, C.A.2
-
14
-
-
0027234853
-
Prediction of the exon-intron structure by a dynamic programming approach
-
Gelfand, M. D. & Roytberg, M. A. (1993). Prediction of the exon-intron structure by a dynamic programming approach. BioSystems, 30, 173-182.
-
(1993)
Biosystems
, vol.30
, pp. 173-182
-
-
Gelfand, M.D.1
Roytberg, M.A.2
-
15
-
-
0027399530
-
Identification of protein coding regions by database similarity search
-
Gish, W. & States, D. J. (1993). Identification of protein coding regions by database similarity search. Nature Genet. 3, 266-272.
-
(1993)
Nature Genet
, vol.3
, pp. 266-272
-
-
Gish, W.1
States, D.J.2
-
16
-
-
0018879196
-
Codon catalog usage and the genome hypothesis
-
Grantham, R., Gautier, C., Gouy M., Mercier, R. & Pave, A. (1980). Codon catalog usage and the genome hypothesis. Nucl. Acids Res. 8, r49-r60.
-
(1980)
Nucl. Acids Res.
, vol.8
, pp. r49-r60
-
-
Grantham, R.1
Gautier, C.2
Gouy, M.3
Mercier, R.4
Pave, A.5
-
17
-
-
0027399170
-
Ancient conserved regions in new gene sequences and the protein databases
-
Green, P., Lipman, D., Hillier, L., Waterston, R., States, D. & Claverie, J.-M. (1993). Ancient conserved regions in new gene sequences and the protein databases. Sciences, 259, 1711-1716.
-
(1993)
Sciences
, vol.259
, pp. 1711-1716
-
-
Green, P.1
Lipman, D.2
Hillier, L.3
Waterston, R.4
States, D.5
Claverie, J.-M.6
-
18
-
-
0021760027
-
The codon preference plot: Graphic analysis of protein coding sequences and prediction of gene expression
-
Gribskov, M., Devereux, J. & Burgess, R. R. (1984). The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. Nucl. Acids Res. 12, 529-549.
-
(1984)
Nucl. Acids Res.
, vol.12
, pp. 529-549
-
-
Gribskov, M.1
Devereux, J.2
Burgess, R.R.3
-
19
-
-
0026647310
-
Prediction of gene structure
-
Guigo, R., Knudsen, S., Drake, N. & Smith, T. (1992). Prediction of gene structure. J. Mol. Biol. 226, 141-157.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 141-157
-
-
Guigo, R.1
Knudsen, S.2
Drake, N.3
Smith, T.4
-
20
-
-
0023685544
-
A survey on intron and exon lengths
-
Hawkins, J. D. (1988). A survey on intron and exon lengths. Nucl. Acids Res. 16, 9893-9908.
-
(1988)
Nucl. Acids Res.
, vol.16
, pp. 9893-9908
-
-
Hawkins, J.D.1
-
22
-
-
0029184548
-
Super pattern matching
-
Knight, J. & Myers, E. (1995). Super pattern matching. Algorithmica, 13, 211-243.
-
(1995)
Algorithmica
, vol.13
, pp. 211-243
-
-
Knight, J.1
Myers, E.2
-
23
-
-
0025281130
-
Complexity charts can be used to map functional domains in DNA
-
Konopka, A. K. & Owens, J. (1990). Complexity charts can be used to map functional domains in DNA. Gene Anal. Techn. Appl. 7, 35-38.
-
(1990)
Gene Anal. Techn. Appl.
, vol.7
, pp. 35-38
-
-
Konopka, A.K.1
Owens, J.2
-
24
-
-
0028105794
-
Yeast chromosome III: New gene functions
-
Koonin, E., Bork, P. & Sander, C. (1994). Yeast chromosome III: new gene functions. EMBO J. 13, 493-503.
-
(1994)
EMBO J
, vol.13
, pp. 493-503
-
-
Koonin, E.1
Bork, P.2
Sander, C.3
-
25
-
-
0020582030
-
Contextual constraints of synonymous codon choice
-
Lipman, D. J. & Wilbur, W. J. (1983). Contextual constraints of synonymous codon choice. J. Mol. Biol. 163, 377-394.
-
(1983)
J. Mol. Biol.
, vol.163
, pp. 377-394
-
-
Lipman, D.J.1
Wilbur, W.J.2
-
26
-
-
0021768587
-
A method for measuring the non-random bias of codon usage
-
Mc Lachlan, A. D., Staden, R. & Boswell, D. R. (1984). A method for measuring the non-random bias of codon usage. Nucl. Acids Res. 12, 9567-9575.
-
(1984)
Nucl. Acids Res.
, vol.12
, pp. 9567-9575
-
-
McLachlan, A.D.1
Staden, R.2
Boswell, D.R.3
-
27
-
-
0025884418
-
The distribution of genes in the human genome
-
Mouchiroud, D., D’Onofrio, G., Aissani, B., Macaya, G., Gautier, C. & Bernardi, G. (1991). The distribution of genes in the human genome. Gene, 110, 181-187.
-
(1991)
Gene
, vol.110
, pp. 181-187
-
-
Mouchiroud, D.1
D’onofrio, G.2
Aissani, B.3
Macaya, G.4
Gautier, C.5
Bernardi, G.6
-
28
-
-
0020050314
-
A catalog of splice junction sequences
-
Mount, S. M. (1982). A catalog of splice junction sequences. Nucl. Acids Res. 10, 459-472.
-
(1982)
Nucl. Acids Res.
, vol.10
, pp. 459-472
-
-
Mount, S.M.1
-
29
-
-
0026434573
-
Finding DNA sequencing errors
-
Roberts, L. (1991). Finding DNA sequencing errors. Science, 252, 1256-1257.
-
(1991)
Science
, vol.252
, pp. 1256-1257
-
-
Roberts, L.1
-
30
-
-
0001926477
-
The computational linguistics of biological sequences
-
AAAI Press, Cambridge, MA
-
Searls, D. B. (1993). The computational linguistics of biological sequences. In Artificial Intelligence and Molecular Biology, pp. 47-120. AAAI Press, Cambridge, MA.
-
(1993)
Artificial Intelligence and Molecular Biology
, pp. 47-120
-
-
Searls, D.B.1
-
31
-
-
0001844040
-
A syntactic pattern recognition system for DNA sequences
-
Lim, H. A., Fickett, J., Cantor, C. R. & Robbins, R. J., World Scientific, Teaneck, NJ
-
Searls, D. B. & Dong, S. (1993). A syntactic pattern recognition system for DNA sequences. In Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis (Lim, H. A., Fickett, J., Cantor, C. R. & Robbins, R. J., eds), pp. 89-101, World Scientific, Teaneck, NJ.
-
(1993)
Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis
, pp. 89-101
-
-
Searls, D.B.1
Dong, S.2
-
32
-
-
0025321246
-
Splice junctions, branch point sites, and exons: Sequence statistics, identification, and application to genome project
-
Senapathy P., Shapiro, M. B. & Harris, N. L. (1990). Splice junctions, branch point sites, and exons: sequence statistics, identification, and application to genome project. Methods Enzymol. 183, 252-278.
-
(1990)
Methods Enzymol
, vol.183
, pp. 252-278
-
-
Senapathy, P.1
Shapiro, M.B.2
Harris, N.L.3
-
34
-
-
0023651307
-
RNA splice junctions of different classes of eukaryotes sequence statistics and functional implications in gene expression
-
Shapiro, M. B. & Senapathy, P. (1987). RNA splice junctions of different classes of eukaryotes sequence statistics and functional implications in gene expression. Nucl. Acids Res. 15, 7155-7174.
-
(1987)
Nucl. Acids Res.
, vol.15
, pp. 7155-7174
-
-
Shapiro, M.B.1
Senapathy, P.2
-
35
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T. F. & Waterman, M. S. (1981). Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
37
-
-
0027229632
-
Identification of coding regions in genomic DNA sequences: An application of dynamic programming and neural networks
-
Snyder, E. E. & Stormo, G. D. (1993). Identification of coding regions in genomic DNA sequences: an application of dynamic programming and neural networks. Nucl. Acids Res. 21, 607-613.
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 607-613
-
-
Snyder, E.E.1
Stormo, G.D.2
-
38
-
-
2042514896
-
Identifying genes in genomic DNA sequences
-
2nd edit., IRL Press, Oxford, in the press
-
Snyder, E. E. & Stormo, G. D. (1994). Identifying genes in genomic DNA sequences. In Nucleic Acid and Protein Sequence Analysis: A Practical Approach, 2nd edit., IRL Press, Oxford, in the press.
-
(1994)
Nucleic Acid and Protein Sequence Analysis: A Practical Approach
-
-
Snyder, E.E.1
Stormo, G.D.2
-
39
-
-
0347640068
-
Gm: A tool for exploratory analysis of DNA sequence data
-
IEEE Computer Society Press, Los Alamitos, CA
-
Soderlund, C., Schanmugam, P., White, O. & Fields, C. (1992). gm: a tool for exploratory analysis of DNA sequence data. In Proceedings of the Twenty- fifth Hawaii International Conference on System Sciences, BiotechnologyComputingMinitrack, vol. 1, pp. 653-662, IEEE Computer Society Press, Los Alamitos, CA.
-
(1992)
Proceedings of the Twenty- Fifth Hawaii International Conference on System Sciences, Biotechnologycomputingminitrack
, vol.1
, pp. 653-662
-
-
Soderlund, C.1
Schanmugam, P.2
White, O.3
Fields, C.4
-
40
-
-
0020039567
-
Codon preference and its use in identifying protein coding regions in long DNA sequences
-
Staden, R. & Mc Lachlan, A. D. (1982). Codon preference and its use in identifying protein coding regions in long DNA sequences. Nucl. Acids Res. 10, 141-156.
-
(1982)
Nucl. Acids Res.
, vol.10
, pp. 141-156
-
-
Staden, R.1
McLachlan, A.D.2
-
41
-
-
0007543818
-
Identifying coding sequences
-
Bishop, M. J. & Rawlings, C. J., IRL Press, Oxford
-
Stormo, G. D. (1987). Identifying coding sequences. In Nucleic Acid and Protein Sequence Analysis, A Practical Approach (Bishop, M. J. & Rawlings, C. J., eds), pp. 231-258. IRL Press, Oxford.
-
(1987)
Nucleic Acid and Protein Sequence Analysis, a Practical Approach
, pp. 231-258
-
-
Stormo, G.D.1
-
42
-
-
0023678091
-
Computer methods for analyzing sequence recognition of nucleic acids
-
Stormo, G. D. (1988). Computer methods for analyzing sequence recognition of nucleic acids. Annu. Rev. Biophys. Chem. 17, 241-263.
-
(1988)
Annu. Rev. Biophys. Chem.
, vol.17
, pp. 241-263
-
-
Stormo, G.D.1
-
43
-
-
0025342573
-
Consensus patterns in DNA
-
Stormo, G. D. (1990). Consensus patterns in DNA. Methods Enzymol. 183, 211-221.
-
(1990)
Methods Enzymol
, vol.183
, pp. 211-221
-
-
Stormo, G.D.1
-
44
-
-
0026351408
-
Locating protein-coding region in human DNA sequences by a multiple sensor-neural network approach
-
Uberbacher, E. C. & Mural, R. J. (1991). Locating protein-coding region in human DNA sequences by a multiple sensor-neural network approach. Proc. Nat. Acad. Sci, U.S.A. 88, 11261-11265.
-
(1991)
Proc. Nat. Acad. Sci, U.S.A.
, vol.88
, pp. 11261-11265
-
-
Uberbacher, E.C.1
Mural, R.J.2
-
46
-
-
0021391647
-
On the statistical efficiency of the LMS algorithm with nonstationary inputs
-
Widrow, B. & Walach, E. (1984). On the statistical efficiency of the LMS algorithm with nonstationary inputs. IEEE Trans. Inf. Theory, 30, 211-221.
-
(1984)
IEEE Trans. Inf. Theory
, vol.30
, pp. 211-221
-
-
Widrow, B.1
Walach, E.2
-
47
-
-
0028295681
-
J. (1995). 2.2Mb of continuous nucleotide sequence from chromosomelII of C. elegans
-
Wilson, R., Ainscough, R., Anderson, K., Baynes, C., Berks, M., Bonfield, J., Burtoni, J., Connell, M., Copsey T. & Cooper, J. (1995). 2.2Mb of continuous nucleotide sequence from chromosomelII of C. elegans. Nature (London), 368, 32-38.
-
Nature (London)
, vol.368
, pp. 32-38
-
-
Wilson, R.1
Ainscough, R.2
Erson, K.3
Baynes, C.4
Berks, M.5
Bonfield, J.6
Burtoni, J.7
Connell, M.8
Copsey, T.9
-
49
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
Wootton, J. C. & Federhen, S. (1993). Statistics of local complexity in amino acid sequences and sequence databases. Comp. Chem. 17, 149-163.
-
(1993)
Comp. Chem.
, vol.17
, pp. 149-163
-
-
Wootton, J.C.1
Federhen, S.2
-
50
-
-
0028685492
-
An improved systemfor exon recognition and gene modeling in human DNA sequences
-
Altman, R., Brutlag, D., Karp, P., Lathrop, R. & Searls, D., AAAI Press, Menlo Park, CA
-
Xu, Y, Einstein, J. R., Mural, R. J., Shah, M. & Uberbacher, E.C. (1994a). An improved systemfor exon recognition and gene modeling in human DNA sequences. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology (Altman, R., Brutlag, D., Karp, P., Lathrop, R. & Searls, D., eds), pp. 376-384, AAAI Press, Menlo Park, CA.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 376-384
-
-
Xu, Y.1
Einstein, J.R.2
Mural, R.J.3
Shah, M.4
Uberbacher, E.C.5
-
51
-
-
0028605559
-
Constructing gene models from accurately predicted exons: An application of dynamic programming
-
Xu, Y, Mural, R.J. &Uberbacker, E.C. (1994b) Constructing gene models from accurately predicted exons: an application of dynamic programming. Comput. Appl. Biol. Sci. 10, 613-623.
-
(1994)
Comput. Appl. Biol. Sci.
, vol.10
, pp. 613-623
-
-
Xu, Y.1
Mural, R.J.2
Uberbacker, E.C.3
-
52
-
-
0022405085
-
Sense codons are found in specific contexts
-
Yarus, M. & Foley L. S. (1985). Sense codons are found in specific contexts. J. Mol. Biol. 182, 529-540.
-
(1985)
J. Mol. Biol.
, vol.182
, pp. 529-540
-
-
Yarus, M.1
Foley, L.S.2
-
53
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zucker, M. (1989). On finding all suboptimal foldings of an RNA molecule. Science, 244, 48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zucker, M.1
|