메뉴 건너뛰기




Volumn 247, Issue 1, 1995, Pages 11-15

Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments

Author keywords

Evolutionary information; Local structural environment scoring; Multiple sequence alignment; Nearest neighbor algorithm; Protein secondary structure prediction

Indexed keywords


EID: 0028965118     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1994.0116     Document Type: Editorial
Times cited : (262)

References (19)
  • 1
    • 0025830469 scopus 로고
    • A method to identify protein sequences that fold into a known three-dimensional structure
    • Bowie, J. U., Luthy, R. & Eisenberg, D. (1991). A method to identify protein sequences that fold into a known three-dimensional structure. Science, 253, 164-170.
    • (1991) Science , vol.253 , pp. 164-170
    • Bowie, J.U.1    Luthy, R.2    Eisenberg, D.3
  • 2
    • 0017868338 scopus 로고
    • Empirical predictions of protein conformation
    • Chou, P., & Fasman, G. (1978). Empirical predictions of protein conformation. Annu. Rev. Biochem. 47, 251-276.
    • (1978) Annu. Rev. Biochem. , vol.47 , pp. 251-276
    • Chou, P.1    Fasman, G.2
  • 3
    • 0028009149 scopus 로고
    • SOPM: A self-optimized method for protein secondary structure prediction
    • Geourjon, C. & Deleage, G. (1994). SOPM: A self-optimized method for protein secondary structure prediction. Protein Eng. 7, 157-164.
    • (1994) Protein Eng , vol.7 , pp. 157-164
    • Geourjon, C.1    Deleage, G.2
  • 4
    • 0026656815 scopus 로고
    • Exhaustive matching of the entire protein sequence database
    • Gonnet, G. H., Cohen, M. A. & Benner, S. A. (1992). Exhaustive matching of the entire protein sequence database. Science, 256, 1143-1445.
    • (1992) Science , vol.256 , pp. 1143-1445
    • Gonnet, G.H.1    Cohen, M.A.2    Benner, S.A.3
  • 5
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen bonded and geometrical features
    • Kabsch, W. & Sander, C. (1983). Dictionary of protein secondary structure: pattern recognition of hydrogen bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 6
    • 0025334980 scopus 로고
    • Improvements in protein secondary structure prediction by an enhanced neural network
    • Kneller, D. G., Cohen, F. E. & Langridge, R. (1990). Improvements in protein secondary structure prediction by an enhanced neural network. J. Mol. Biol. 214, 171-182.
    • (1990) J. Mol. Biol. , vol.214 , pp. 171-182
    • Kneller, D.G.1    Cohen, F.E.2    Langridge, R.3
  • 8
    • 0016772212 scopus 로고
    • Comparison of the predicted and observed secondary structure of T4 phage lysozyme
    • Matthews, B. W. (1975). Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta, 405, 402-451.
    • (1975) Biochim. Biophys. Acta , vol.405 , pp. 402-451
    • Matthews, B.W.1
  • 9
    • 0024290472 scopus 로고
    • Amino add preferences for specific locations at the ends of a-helices
    • Richardson, J. S. & Richardson, D. C. (1988). Amino add preferences for specific locations at the ends of a-helices. Science, 240, 1648-1652.
    • (1988) Science , vol.240 , pp. 1648-1652
    • Richardson, J.S.1    Richardson, D.C.2
  • 10
    • 0027291015 scopus 로고
    • Prediction of protein secondary structure at better than 70% accuracy
    • Rost, B. and Sander, C. (1993). Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232, 584-599.
    • (1993) J. Mol. Biol. , vol.232 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 11
    • 0028300741 scopus 로고
    • Combining evolutionary information and neural networks to predict protein secondary structure
    • Rost, B. & Sander, C. (1994). Combining evolutionary information and neural networks to predict protein secondary structure. Proteins: Struct. Funct. Genet. 19, 55- 72.
    • (1994) Proteins: Struct. Funct. Genet. , vol.19
    • Rost, B.1    Sander, C.2
  • 12
    • 0026030641 scopus 로고
    • Database of homology-derived structures and the structural meaning of sequence alignment
    • Sander, C. & Schneider, R. (1991). Database of homology-derived structures and the structural meaning of sequence alignment. Proteins: Struct. Funct. Genet. 9, 56-68.
    • (1991) Proteins: Struct. Funct. Genet , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 13
    • 85027637159 scopus 로고
    • Method of calculation of discrete secondary structures in globular proteins
    • (English translation)
    • Solovyev, V V. & Salamov, A. A. (1991). Method of calculation of discrete secondary structures in globular proteins. Mol. Biol. 25, 657-669 (English translation).
    • (1991) Mol. Biol. , vol.25 , pp. 657-669
    • Solovyev, V.V.1    Salamov, A.A.2
  • 14
    • 0028605560 scopus 로고
    • Predicting a-helix and b-strand segments of globular proteins
    • Solovyev, V. V. & Salamov, A. A. (1994). Predicting a-helix and b-strand segments of globular proteins. CABIOS, 10, 661-669.
    • (1994) CABIOS , vol.10 , pp. 661-669
    • Solovyev, V.V.1    Salamov, A.A.2
  • 15
    • 0025770675 scopus 로고
    • Factors determining formation of globular protein secondary structure
    • (English translation)
    • Solovyev, V. V., Salamov, A. A. & Kapitonov, V. V. (1991). Factors determining formation of globular protein secondary structure. Mol. Biol. 25, 644-657. (English translation).
    • (1991) Mol. Biol. , vol.25 , pp. 644-657
    • Solovyev, V.V.1    Salamov, A.A.2    Kapitonov, V.V.3
  • 16
    • 0021763061 scopus 로고
    • An algorithm to compare secondary structure predictions
    • Taylor, W R. (1984). An algorithm to compare secondary structure predictions J. Mol. Biol. 173, 512-514.
    • (1984) J. Mol. Biol , vol.173 , pp. 512-514
    • Taylor, W.R.1
  • 17
    • 0027199670 scopus 로고
    • Protein secondary structure prediction using nearest-neighbor methods
    • Yi, T.-M. & Lander, E.S. (1993). Protein secondary structure prediction using nearest-neighbor methods. J. Mol. Biol. 232, 1117-1129.
    • (1993) J. Mol. Biol. , vol.232 , pp. 1117-1129
    • Yi, T.-M.1    Lander, E.S.2
  • 18
    • 0026771388 scopus 로고
    • Hybrid system for protein secondary structure prediction
    • Zhang, X., Mesirov, J. P & Waltz, D. L. (1992). Hybrid system for protein secondary structure prediction. J. Mol. Biol. 225, 1049-1063.
    • (1992) J. Mol. Biol. , vol.225 , pp. 1049-1063
    • Zhang, X.1    Mesirov, J.P.2    Waltz, D.L.3
  • 19
    • 0021733908 scopus 로고
    • Conformational changes in the globin family during evolution. 1. Analysis of the evolutionary role of insertion and deletion
    • Zharkikh, A., Solovyev, V. V. & Kolchanov, N. A. (1984). Conformational changes in the globin family during evolution. 1. Analysis of the evolutionary role of insertion and deletion. J. Mol. Evol. 21, 42-53.
    • (1984) J. Mol. Evol. , vol.21 , pp. 42-53
    • Zharkikh, A.1    Solovyev, V.V.2    Kolchanov, N.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.