Strategies for phylogenetic characterization of subsurface bacteria

Journal of Microbiological Methods

Volumn 21, Issue 3, 1995, Pages 235-251

  Reeves, Robert H ^a   Reeves, Jane Y ^a   Balkwill, David L ^a  

^a FLORIDA STATE UNIVERSITY   (United States)

Author keywords

Arthrobacter spp.; Microbial taxonomy; Phylogenetic characterization; Restriction endonuclease analysis; Ribosomal RNA gene sequencing; Subsurface bacteria

Indexed keywords

RNA 16S;

ARTHROBACTER; ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; DNA DETERMINATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; TAXONOMY;

EID: 0028956921     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/0167-7012(94)00052-9     Document Type: Article

References (37)

1. National revised drinking water regulations, volatile organic chemicals in drinking water, advanced notice of rulemaking
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3. Subsurface Science Program: Program Overview and Research Abstracts
4. Geology and hydrology of the deep subsurface microbiology sampling sites at the Savannah River Plant, South Carolina
5. Numbers, diversity, and morphological characteristics of aerobic, chemoheterotrophic bacteria in deep subsurface sediments from a site in South Carolina
6. Denitrification in deep subsurface sediments
7. Lithotrophic and heterotrophic bacteria in deep subsurface sediments and their relation to sediment properties
8. Aerobic metabolic potential of microbial populations indigenous to deep subsurface environments
9. Anaerobic metabolic processes in the deep terrestrial subsurface
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11. Microbial activities in deep subsurface environments
12. Distribution of aerobic bacteria, protozoa and fungi in deep subsurface sediments
13. Vertical and horizontal variations in the physiological diversity of the aerobic chemoheterotrophic bacterial microflora in deep Southeast Coastal Plain subsurface sediments
14. Methods for recovery of deep terrestrial subsurface sediments for microbiological studies
15. Physiological testing and distributions of heterotropohic bacteria in deep Cretaceous sediments of the Atlantic Coastal Plain
16. Genetic characterization
17. Rapid transfer of DNA from agarose gels to nylon membranes
18. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
19. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
20. Taq DyeDeoxy™ Terminator Cycle Sequencing Kit
21. Automated DNA sequencing methods involving polymerase chain reaction
22. The ribosomal database project
23. Improved tools for biological sequence comparison
24. Confidence limits on phylogenies an approach using the bootstrap
25. Bacterial evolution
26. Numerical taxonomy
27. Long-term starvation survival of rod and spherical cells of Arthrobacter crystallopoietes
28. Intracellular substrates for endogenous metabolism during long-term starvation of rod and spherical cells of Arthrobacter crystallopoietes
29. Rates of microbial metabolism in deep coastal plain aquifers
30. Ribosomal ribonucleic acid gene restriction patterns as potential taxonomic tools
31. A broad-spectrum probe for molecular epidemiology of bacteria: ribosomal RNA