Optical mapping of lambda bacteriophage clones using restriction endonucleases

Nature Genetics

Volumn 9, Issue 4, 1995, Pages 432-438

  Meng, Xun ^a   Benson, Kathrine ^b   Chada, Kiran ^b   Huff, Edward J ^a   Schwartz, David C ^a  

^a NEW YORK UNIVERSITY   (United States)

^b RUTGERS ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOPHAGE DNA; GLASS;

ARTICLE; BACTERIOPHAGE LAMBDA; CONTROLLED STUDY; FLUORESCENCE MICROSCOPY; NONHUMAN; OPTICAL RESOLUTION; PRIORITY JOURNAL; RESTRICTION MAPPING; SURFACE PROPERTY;

ANIMAL; BACTERIOPHAGE LAMBDA; CHROMOSOMES, ARTIFICIAL, YEAST; CLONING, MOLECULAR; DNA; ELECTROPHORESIS, GEL, PULSED-FIELD; GLASS; MICE; MICROSCOPY, FLUORESCENCE; MOLECULAR WEIGHT; OPTICS; POLYLYSINE; RESTRICTION MAPPING; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, NON-P.H.S.; SUPPORT, U.S. GOV'T, P.H.S.;

EID: 0028950997     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng0495-432     Document Type: Article

References (25)

1. Olson, M., Hood, L., Cantor, C. & Botstein, D. A common language for physical mapping of the human genome. Science 245, 1434-1435 (1989).
2. Botstein, D., White, R.L., Skolnick, M. & Davis, R.W. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. hum. Genet. 32, 314-331 (1980).
3. Schwartz, D.C., Li, X., Hernandez, L.I., Ramnarain, S.P., Huff, E.J & Wang, Y.-K. Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping. Science 262, 110-114 (1993).
4. Matsumoto, S., Morikawa, K. & Yanagida, M. Light microscopic structure of DNA in solution studied by the 4', 6-diaminidino-2-phenylindole staining method. J. molec. Biol. 152, 501-516 (1981).
5. Yanagida, M., Morikawa, K., Hiraoka, Y., Matsumoto, S., Uemura, T. & Okada, S. in Applications of Fluorescence in the Biomedical Sciences (eds D.L. Taylor, A.S. Waggoner, R.F. Murphy, F. Lanni & R.R. Birge) 321-345 (Alan R. Liss, Inc., New York, 1986).
6. Kaiser, R., Hunkapiller, T., Reiner, C. & Hood, L. Specific primer-directed DNA sequence analysis using automated fluorescence detection and labeled primers. Meth. Enzymol. 218, 122-53 (1993).
7. Craig, G., Nizetic, D., Hoheisel, J.D., Zehetner, G., Lehrach, H. Ordering of cosmid clones covering the Herpes simplex virus type I (HSV I) genome: a test case for fingerprinting by hybridization. Nucl. Adds Res. 18, 2653-2660 (1990).
8. Yoshida, K., Strathmann, M.P., Mayeda, C.A., Martin, C.H. & Palazzolo, M.J. A simple and efficient method for constructing high resolution physical maps. Nucl. Acids Res. 21, 3553-3562 (1993).
9. Seto, D., Koop, B.F., Hood, L. Anexperimentallyderiveddatasetconstructed for testing large-scale DNA sequence assembly algorithms. Genomics 15, 673-676 (1993).
10. Hunkapiller, T., Kaiser, R.J., Koop, B.F. & Hood, L. Large-scale and automated DNA sequence determination. Science 254, 59-67 (1991).
11. Kohara, Y., Akiyama, K. & Isono, K. The physical map of the whole E. coli Chromosome: Application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50, 495-508 (1987).
12. Baxendale, S. et al. A cosmid contig and high resolution restriction map of the 2 megabase region containing the Huntington's disease gene.Nature Genetics 4, 181-186 (1993).
13. Williams, R.C. Use of polylysine for adsorption of nucleic acids and enzymes to electron microscope specimen films. Proc. natn. Acad. Sci. U.S.A. 74, 2311-2315 (1977).
14. Luckham, P.F. & Klein, J. Forces between mica surfaces bearing adsorbed polyelectrolyte, poly-L-lysine, in aqueous media. Chem. Soc. Faraday Trans. I, 80, 865-878 (1984).
15. Guo, X.H., Huff, E.J. & Schwartz, D.C. Sizing single DNA molecules. Nature 359, 783-784 (1992).
16. Guo, X.H., Huff, E.J. & Schwartz, D.C. Sizing of large DNA molecules by hook formation in a loose matrix. J. Biomol. Struct. Dynam. 11, 1-10 (1993).
17. Glazer, A.N., Peck, K. & Mathles, R.A. A stable double-stranded DNA-ethidium homodimer complex: application to picogram fluorescence detection of DNA in agarose gels. Proc. natn. Acad. Sci. U.S.A. 87, 3851-3855 (1990).
18. Meng, X., Cai, W.W. & Schwartz, D.C. Inhibition of restriction endonuclease activity by DNA-Fluorochromes, manuscript in preparation.
19. Xiang, X., Benson, K.F. & Chada, K. Mini-mouse: disruption of the pygmy locus in a transgenic insertional mutant. Science 247, 967-679 (1990).
20. Schwartz, D.C. & Cantor, C.R. Separation of yeast chromosome-sized DMAs by pulsed-field gradient electrophoresis. Cell 37, 67-75 (1984).
21. Burke, D.T., Carle, G.F. & Olson, M.B. Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors.Science 236, 806-812 (1987).
22. Murray, A.W. & Szostak, J.W. Construction of artificial chromosomes in yeast. Nature 305, 189-193 (1983).
23. Olson, M. et al. Random-clone strategy for genomic restriction mapping in yeast. Proc. natn. Acad. Sci. U.S.A. 83, 7821-7825 (1986).
24. Coulson, A., Sulston, J., Brenner, S. & Karn, J. Toward a physical map of the genome of the nematode Caenorhabditis elegans. Proc. natn. Acad. Sci. USA 83, 7826-7830 (1986).
25. Cohen, D., Chumakov, I. & Weissenbach, J. A first-generation physical map of the human genome. Nature 366, 698-701 (1993).