메뉴 건너뛰기




Volumn 15, Issue 5, 1995, Pages 2663-2671

Genetic selection for balanced retroviral splicing: Novel regulation involving the second step can be mediated by transitions in the polypyrimidine tract

Author keywords

[No Author keywords available]

Indexed keywords

PYRIMIDINE;

EID: 0028927643     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.15.5.2663     Document Type: Article
Times cited : (25)

References (52)
  • 1
    • 0023796286 scopus 로고
    • Regulation of Rous sarcoma virus RNA splicing and stability
    • Arrigo, S., and K. Beemon. 1988. Regulation of Rous sarcoma virus RNA splicing and stability. Mol. Cell. Biol. 8:4858-4867.
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 4858-4867
    • Arrigo, S.1    Beemon, K.2
  • 3
    • 0028203652 scopus 로고
    • Development of a human immunodeficiency virus-1 in vitro DNA synthesis system to study reverse transcriptase inhibitors
    • Borroto-Esoda, K., and L. R. Boone. 1994. Development of a human immunodeficiency virus-1 in vitro DNA synthesis system to study reverse transcriptase inhibitors. Antivir. Res. 23:235-249.
    • (1994) Antivir. Res. , vol.23 , pp. 235-249
    • Borroto-Esoda, K.1    Boone, L.R.2
  • 4
    • 85035153332 scopus 로고    scopus 로고
    • Unpublished data
    • Bouck, J. Unpublished data.
    • Bouck, J.1
  • 5
    • 0027955795 scopus 로고
    • A small element from the Mason-Pfizer monkey virus genome makes human immunodeficiency virus type 1 expression and replication Rev-independent
    • Bray, M., S. Prasad. J. W. DuBay. E. Hunter. K.-T. Jeang, D. Rekosh, and M.-L. Hammarskjöld. 1994. A small element from the Mason-Pfizer monkey virus genome makes human immunodeficiency virus type 1 expression and replication Rev-independent. Proc. Natl. Acad. Sci. USA 91:1256-1260.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1256-1260
    • Bray, M.1    Prasad, S.2    DuBay, J.W.3    Hunter, E.4    Jeang, K.-T.5    Rekosh, D.6    Hammarskjöld, M.-L.7
  • 6
    • 0024991633 scopus 로고
    • Messenger RNA transport and HIV rev regulation
    • Chang, D. D., and P. A. Sharp. 1990. Messenger RNA transport and HIV rev regulation. Science 249:614-615.
    • (1990) Science , vol.249 , pp. 614-615
    • Chang, D.D.1    Sharp, P.A.2
  • 7
    • 0027507225 scopus 로고
    • Direct selection tor mutations affecting specific splice sites in a hamster dihydrofolate reductase minigene
    • Chen, I.-T., and L. A. Chasin. 1993. Direct selection tor mutations affecting specific splice sites in a hamster dihydrofolate reductase minigene. Mol. Cell. Biol. 13:289-300.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 289-300
    • Chen, I.-T.1    Chasin, L.A.2
  • 8
    • 0001002170 scopus 로고
    • Retroviridae and their replication
    • B. N. Fields and D. M. Knipe (ed.), Raven Press, New York
    • Coffin, J. M. 1990. Retroviridae and their replication, p. 1437-1500. In B. N. Fields and D. M. Knipe (ed.), Fields' virology. Raven Press, New York.
    • (1990) Fields' Virology , pp. 1437-1500
    • Coffin, J.M.1
  • 9
    • 0026039804 scopus 로고
    • Selection of splice sites in pre-mRNAs with short internal exons
    • Dominski, Z., and R. Kole. 1991. Selection of splice sites in pre-mRNAs with short internal exons. Mol. Cell. Biol. 11:6075-6083.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 6075-6083
    • Dominski, Z.1    Kole, R.2
  • 10
    • 0026065612 scopus 로고
    • The role of branchpoint and 3′-exon sequences in the control of balanced splicing of avian retrovirus RNA
    • Fu, X.-D., R. A. Katz, A. M. Skalka, and T. Maniatis. 1991. The role of branchpoint and 3′-exon sequences in the control of balanced splicing of avian retrovirus RNA. Genes Dev. 5:211-220.
    • (1991) Genes Dev. , vol.5 , pp. 211-220
    • Fu, X.-D.1    Katz, R.A.2    Skalka, A.M.3    Maniatis, T.4
  • 11
    • 0023968479 scopus 로고
    • The role of the polypyrimidine stretch at the SV40 early pre-mRNA 3′ splice site in alternative splicing
    • Fu, X.-Y., H. Ge, and J. L. Manley. 1988. The role of the polypyrimidine stretch at the SV40 early pre-mRNA 3′ splice site in alternative splicing. EMBO J. 7:809-817.
    • (1988) EMBO J. , vol.7 , pp. 809-817
    • Fu, X.-Y.1    Ge, H.2    Manley, J.L.3
  • 12
    • 0024842159 scopus 로고
    • Identification and purification of a 62.000-dalton protein that binds specifically to the polypyrimidine tract of introns
    • Garcia-Blanco, M. A., S. F. Jamison, and P. A. Sharp. 1989. Identification and purification of a 62.000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3:1874-1886.
    • (1989) Genes Dev. , vol.3 , pp. 1874-1886
    • Garcia-Blanco, M.A.1    Jamison, S.F.2    Sharp, P.A.3
  • 13
    • 0025893215 scopus 로고
    • Characterization of cDNA's encoding the polypyrimidine tract-binding protein
    • Gil, A., P. A. Sharp, S. F. Jamison, and M. Garcia-Blanco. 1991. Characterization of cDNA's encoding the polypyrimidine tract-binding protein. Genes Dev. 5:1224-1236.
    • (1991) Genes Dev. , vol.5 , pp. 1224-1236
    • Gil, A.1    Sharp, P.A.2    Jamison, S.F.3    Garcia-Blanco, M.4
  • 14
    • 0028360767 scopus 로고
    • A novel set of spliceosome-associated proteins and the essential splicing factor PSF bind stably to pre-mRNA prior to catalytic step II of the splicing reaction
    • Gozani, O., J. G. Patton, and R. Reed. 1994. A novel set of spliceosome-associated proteins and the essential splicing factor PSF bind stably to pre-mRNA prior to catalytic step II of the splicing reaction. EMBO J. 13:3356-3367.
    • (1994) EMBO J. , vol.13 , pp. 3356-3367
    • Gozani, O.1    Patton, J.G.2    Reed, R.3
  • 15
    • 0025787954 scopus 로고
    • Biochemical mechanisms of constitutive and regulated pre-mRNA splicing
    • Green, M. R. 1991. Biochemical mechanisms of constitutive and regulated pre-mRNA splicing. Annu. Rev. Cell Biol. 7:559-599.
    • (1991) Annu. Rev. Cell Biol. , vol.7 , pp. 559-599
    • Green, M.R.1
  • 16
    • 0028139772 scopus 로고
    • Genetic and biochemical analysis of alternative RNA splicing
    • Hodges, D., and S. I. Bernstein. 1994. Genetic and biochemical analysis of alternative RNA splicing. Adv. Genet. 31:207-281.
    • (1994) Adv. Genet. , vol.31 , pp. 207-281
    • Hodges, D.1    Bernstein, S.I.2
  • 17
    • 0022908925 scopus 로고
    • Avian retrovirus nucleocapsid protein, pp12, produced in Escherichia coli has biochemical properties identical to unphosphorylated viral proteins
    • Katz, R. A., X.-D. Fu, A. M. Skalka, and J. Leis. 1986. Avian retrovirus nucleocapsid protein, pp12, produced in Escherichia coli has biochemical properties identical to unphosphorylated viral proteins. Gene 50:361-369.
    • (1986) Gene , vol.50 , pp. 361-369
    • Katz, R.A.1    Fu, X.-D.2    Skalka, A.M.3    Leis, J.4
  • 18
    • 0023770974 scopus 로고
    • Civ-acting intron mutations that affect the efficiency of avian retroviral RNA splicing: Implication for mechanisms of control
    • Katz, R. A., M. Kotler, and A. M. Skalka. 1988. civ-acting intron mutations that affect the efficiency of avian retroviral RNA splicing: implication for mechanisms of control. J. Virol. 62:2686-2695.
    • (1988) J. Virol. , vol.62 , pp. 2686-2695
    • Katz, R.A.1    Kotler, M.2    Skalka, A.M.3
  • 19
    • 0025666927 scopus 로고
    • Generation of diversity in retroviruses
    • Katz, R. A., and A. M. Skalka. 1990. Generation of diversity in retroviruses. Annu. Rev. Genet. 24:409-445.
    • (1990) Annu. Rev. Genet. , vol.24 , pp. 409-445
    • Katz, R.A.1    Skalka, A.M.2
  • 20
    • 0025156779 scopus 로고
    • Control of retroviral RNA splicing through maintenance of suboptimal processing signals
    • Katz, R. A., and A. M. Skalka. 1990. Control of retroviral RNA splicing through maintenance of suboptimal processing signals. Mol. Cell. Biol. 10: 696-704.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 696-704
    • Katz, R.A.1    Skalka, A.M.2
  • 21
    • 0027283983 scopus 로고
    • The basic domain of Rev from human immunodeficiency virus type 1 specifically blocks the entry of U4/U6-U5 small nuclear ribonucleoprotein in spliceosome assembly
    • Kjems, J., and P. A Sharp. 1993. The basic domain of Rev from human immunodeficiency virus type 1 specifically blocks the entry of U4/U6-U5 small nuclear ribonucleoprotein in spliceosome assembly. J. Virol. 67:4769-4776.
    • (1993) J. Virol. , vol.67 , pp. 4769-4776
    • Kjems, J.1    Sharp, P.A.2
  • 22
    • 0027451310 scopus 로고
    • RNA annealing activity is intrinsically associated with U2AF
    • Lee, C.-G., P. D. Zamore, M. R. Green, and J. Hurwitz. 1993. RNA annealing activity is intrinsically associated with U2AF. J. Biol. Chem. 268:13472-13478.
    • (1993) J. Biol. Chem. , vol.268 , pp. 13472-13478
    • Lee, C.-G.1    Zamore, P.D.2    Green, M.R.3    Hurwitz, J.4
  • 23
    • 0025169566 scopus 로고
    • U1 small nuclear RNA plays a direct role in the formation of a rev-regulated human immunodeficiency virus env mRNA that remains unspliced
    • Lu, X., J. Heimer, D. Rekosh, and M.-L. Hammarskjöld. 1990. U1 small nuclear RNA plays a direct role in the formation of a rev-regulated human immunodeficiency virus env mRNA that remains unspliced. Proc. Natl. Acad. Sci. USA 87:7598-7602.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 7598-7602
    • Lu, X.1    Heimer, J.2    Rekosh, D.3    Hammarskjöld, M.-L.4
  • 24
    • 0026034658 scopus 로고
    • Mechanisms of alternative pre-mRNA splicing
    • Maniatis, T. 1991. Mechanisms of alternative pre-mRNA splicing. Science 251:33-34.
    • (1991) Science , vol.251 , pp. 33-34
    • Maniatis, T.1
  • 25
    • 0026687366 scopus 로고
    • Autoregulation and multifunctionality among trans-acting factors that regulate alternative pre-mRNA processing
    • Mattox, W., L. Ryner, and B. S. Baker. 1992. Autoregulation and multifunctionality among trans-acting factors that regulate alternative pre-mRNA processing. J. Biol. Chem. 267:19023-19026.
    • (1992) J. Biol. Chem. , vol.267 , pp. 19023-19026
    • Mattox, W.1    Ryner, L.2    Baker, B.S.3
  • 26
    • 0026749541 scopus 로고
    • Alternative mRNA splicing
    • McKeown, M. 1992. Alternative mRNA splicing. Annu. Rev. Cell Biol. 8:133-155.
    • (1992) Annu. Rev. Cell Biol. , vol.8 , pp. 133-155
    • McKeown, M.1
  • 27
    • 0026500529 scopus 로고
    • Intronic sequences and 3′ splice sites control Rous sarcoma virus RNA splicing
    • McNally, M. T., and K. Beemon. 1992. Intronic sequences and 3′ splice sites control Rous sarcoma virus RNA splicing. J. Virol. 66:6-11.
    • (1992) J. Virol. , vol.66 , pp. 6-11
    • McNally, M.T.1    Beemon, K.2
  • 28
    • 0025953458 scopus 로고
    • Characterization of Rous sarcoma virus intronic sequences that negatively regulate splicing
    • McNally, M. T., R. R. Gontarek, and K. Beemon. 1991. Characterization of Rous sarcoma virus intronic sequences that negatively regulate splicing. Virology 185:99-108.
    • (1991) Virology , vol.185 , pp. 99-108
    • McNally, M.T.1    Gontarek, R.R.2    Beemon, K.3
  • 29
    • 0001877802 scopus 로고
    • Splicing of precursors to messenger RNAs by the spliceosome
    • R. Gesteland and J. Atkins (ed.). Cold Spring Harbor Press. Cold Spring Harbor, N.Y.
    • Moore, M. J., C. C. Query, and P. A. Sharp. 1993. Splicing of precursors to messenger RNAs by the spliceosome, p. 303-357. In R. Gesteland and J. Atkins (ed.). The RNA world. Cold Spring Harbor Press. Cold Spring Harbor, N.Y.
    • (1993) The RNA World , pp. 303-357
    • Moore, M.J.1    Query, C.C.2    Sharp, P.A.3
  • 30
    • 0025892442 scopus 로고
    • α-Tropomyosin mutually exclusive exon selection: Competition between branchpoint/polypyrimidine tracts determines default exon choice
    • Mullen, M. P., C. W. J. Smith, J. G. Patton, and B. Nadal-Ginard. 1991. α-Tropomyosin mutually exclusive exon selection: competition between branchpoint/polypyrimidine tracts determines default exon choice. Genes Dev. 5:642-655.
    • (1991) Genes Dev. , vol.5 , pp. 642-655
    • Mullen, M.P.1    Smith, C.W.J.2    Patton, J.G.3    Nadal-Ginard, B.4
  • 31
    • 0028308696 scopus 로고
    • RNA-RNA interactions in the spliceosome: Unraveling the ties that bind
    • Nilsen, T. W. 1994. RNA-RNA interactions in the spliceosome: unraveling the ties that bind. Cell 78:1-4.
    • (1994) Cell , vol.78 , pp. 1-4
    • Nilsen, T.W.1
  • 32
    • 0026030643 scopus 로고
    • A U-rich tract enhances usage of an alternative 3′ splice site in yeast
    • Patterson, B., and C. Guthrie. 1991. A U-rich tract enhances usage of an alternative 3′ splice site in yeast. Cell 64:181-187.
    • (1991) Cell , vol.64 , pp. 181-187
    • Patterson, B.1    Guthrie, C.2
  • 33
    • 0025856790 scopus 로고
    • Characterization and molecular cloning of polypyrimidine tract-binding protein: A component of a complex necessary for pre-mRNA splicing
    • Patton, J. G., S. A. Mayer, P. Tempst, and B. Nadal-Ginard. 1991. Characterization and molecular cloning of polypyrimidine tract-binding protein: a component of a complex necessary for pre-mRNA splicing. Genes Dev. 5:1237-1251.
    • (1991) Genes Dev. , vol.5 , pp. 1237-1251
    • Patton, J.G.1    Mayer, S.A.2    Tempst, P.3    Nadal-Ginard, B.4
  • 34
    • 0027245959 scopus 로고
    • Cloning and characterization of PSF, a novel pre-mRNA splicing factor
    • Patton, J. G., E. B. Porro, J. Galceran, P. Tempst, and B. Nadal-Ginard. 1993. Cloning and characterization of PSF, a novel pre-mRNA splicing factor. Genes Dev. 7:393-406.
    • (1993) Genes Dev. , vol.7 , pp. 393-406
    • Patton, J.G.1    Porro, E.B.2    Galceran, J.3    Tempst, P.4    Nadal-Ginard, B.5
  • 35
    • 0027330895 scopus 로고
    • T cell receptor-β mRNA splicing during thymic maturation in vivo and in an inducible T cell clone in vitro
    • Qian, L., M. N. Vu, M. S. Carter, J. Doskow, and M. F. Wilkinson. 1993. T cell receptor-β mRNA splicing during thymic maturation in vivo and in an inducible T cell clone in vitro. J. Immunol. 151:6801-6814.
    • (1993) J. Immunol. , vol.151 , pp. 6801-6814
    • Qian, L.1    Vu, M.N.2    Carter, M.S.3    Doskow, J.4    Wilkinson, M.F.5
  • 36
    • 0028205987 scopus 로고
    • Branch nucleophile selection in pre-mRNA splicing: Evidence for the bulged duplex model
    • Query, C. C., M. J. Moore, and P. A. Sharp. 1994. Branch nucleophile selection in pre-mRNA splicing: evidence for the bulged duplex model. Genes Dev. 8:587-597.
    • (1994) Genes Dev. , vol.8 , pp. 587-597
    • Query, C.C.1    Moore, M.J.2    Sharp, P.A.3
  • 37
    • 0024808994 scopus 로고
    • The organization of 3′ splice-site sequences in mammalian introns
    • Reed, R. 1989. The organization of 3′ splice-site sequences in mammalian introns. Genes Dev. 3:2113-2123.
    • (1989) Genes Dev. , vol.3 , pp. 2113-2123
    • Reed, R.1
  • 39
    • 0027233694 scopus 로고
    • A mutational analysis of the polypyrimidine tract of introns
    • Roscigno, R. F., M. Weiner, and M. A. Garcia-Blanco. 1993. A mutational analysis of the polypyrimidine tract of introns. J. Biol. Chem. 268:11222-11229.
    • (1993) J. Biol. Chem. , vol.268 , pp. 11222-11229
    • Roscigno, R.F.1    Weiner, M.2    Garcia-Blanco, M.A.3
  • 40
    • 0020594561 scopus 로고
    • Nucleotide sequence of Rous sarcoma virus
    • Schwanz, D. E., R. Tizard, and W. Gilbert. 1983. Nucleotide sequence of Rous sarcoma virus. Cell 32:853-869.
    • (1983) Cell , vol.32 , pp. 853-869
    • Schwanz, D.E.1    Tizard, R.2    Gilbert, W.3
  • 41
    • 0024594710 scopus 로고
    • Mutually exclusive splicing of α-tropomyosin exons enforced by an unusual lariat branch point location: Implications for constitutive splicing
    • Smith, C. W. J., and B. Nadal-Ginard. 1989. Mutually exclusive splicing of α-tropomyosin exons enforced by an unusual lariat branch point location: implications for constitutive splicing. Cell 56:749-758.
    • (1989) Cell , vol.56 , pp. 749-758
    • Smith, C.W.J.1    Nadal-Ginard, B.2
  • 42
    • 0024829844 scopus 로고
    • Alternative splicing in the control of gene expression
    • Smith, C. W, J., J. G. Patton, and B. Nadal-Ginard. 1989. Alternative splicing in the control of gene expression. Annu. Rev. Genet. 23:527-577.
    • (1989) Annu. Rev. Genet. , vol.23 , pp. 527-577
    • Smith, C.W.J.1    Patton, J.G.2    Nadal-Ginard, B.3
  • 43
    • 0024470631 scopus 로고
    • Scanning from an independently specified branch point defines the 3′ splice site of mammalian introns
    • Smith, C. W. J., E. B. Porro, J. G. Patton, and B. Nadal-Ginard. 1989. Scanning from an independently specified branch point defines the 3′ splice site of mammalian introns. Nature (London) 342:243-247.
    • (1989) Nature (London) , vol.342 , pp. 243-247
    • Smith, C.W.J.1    Porro, E.B.2    Patton, J.G.3    Nadal-Ginard, B.4
  • 44
    • 0026663296 scopus 로고
    • Splicing takes a holiday
    • Steitz, J. A. 1992. Splicing takes a holiday. Science 257:888-889.
    • (1992) Science , vol.257 , pp. 888-889
    • Steitz, J.A.1
  • 45
    • 0024589788 scopus 로고
    • Multiple regions in the Rous sarcoma virus src gene intron act in cis to affect the accumulation of unspliced RNA
    • Stoltzfus, C. M., and S. J. Fogarty. 1989. Multiple regions in the Rous sarcoma virus src gene intron act in cis to affect the accumulation of unspliced RNA. J. Virol. 63:1669-1676.
    • (1989) J. Virol. , vol.63 , pp. 1669-1676
    • Stoltzfus, C.M.1    Fogarty, S.J.2
  • 46
    • 0028118641 scopus 로고
    • Polypurine sequences within a downstream exon function as a splicing enhancer
    • Tanaka, K., A. Watakabe, and Y. Shimura. 1994. Polypurine sequences within a downstream exon function as a splicing enhancer. Mol. Cell. Biol. 14:1347-1354.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 1347-1354
    • Tanaka, K.1    Watakabe, A.2    Shimura, Y.3
  • 47
    • 0022894691 scopus 로고
    • A protein that specifically recognizes the 3′ splice site of mammalian pre-mRNA introns is associated with a small nuclear ribonucleoprotein
    • Tazi, J., C. Alibert, J. Temsamani, I. Reveillaud, G. Cathala, C. Brunel, and P. Jeanteur. 1986. A protein that specifically recognizes the 3′ splice site of mammalian pre-mRNA introns is associated with a small nuclear ribonucleoprotein. Cell 47:755-766.
    • (1986) Cell , vol.47 , pp. 755-766
    • Tazi, J.1    Alibert, C.2    Temsamani, J.3    Reveillaud, I.4    Cathala, G.5    Brunel, C.6    Jeanteur, P.7
  • 48
    • 0024743838 scopus 로고
    • Mammalian pre-mRNA branch site selection by U2 snRNP involves base pairing
    • Wu, J., and J. L. Manley. 1989. Mammalian pre-mRNA branch site selection by U2 snRNP involves base pairing. Genes Dev. 3:1553-1561.
    • (1989) Genes Dev. , vol.3 , pp. 1553-1561
    • Wu, J.1    Manley, J.L.2
  • 49
    • 0027175502 scopus 로고
    • The cardiac troponin T alternative exon contains a novel purine-rich positive splicing element
    • Xu, R., J. Teng, and T. A. Cooper. 1993. The cardiac troponin T alternative exon contains a novel purine-rich positive splicing element. Mol. Cell. Biol. 13:3660-3674.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 3660-3674
    • Xu, R.1    Teng, J.2    Cooper, T.A.3
  • 50
    • 0024408832 scopus 로고
    • Identification, purification, and biochemical characterization of U2 small nuclear rihonucleoprotein auxiliary factor
    • Zamore, P. D., and M. R. Green. 1989. Identification, purification, and biochemical characterization of U2 small nuclear rihonucleoprotein auxiliary factor. Proc. Natl. Acad. Sci. USA 86:9243-9247.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9243-9247
    • Zamore, P.D.1    Green, M.R.2
  • 51
    • 0002862339 scopus 로고
    • UACUAAC is the preferred branch site for mammalian mRNA splicing
    • Zhuang, Y., A. M. Goldstein, and A. M. Weiner. 1989. UACUAAC is the preferred branch site for mammalian mRNA splicing. Proc. Natl. Acad. Sci. USA 86:2752-2756.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2752-2756
    • Zhuang, Y.1    Goldstein, A.M.2    Weiner, A.M.3
  • 52
    • 0024744567 scopus 로고
    • A compensatory base change in human U2 snRNA can suppress a branch site mutation
    • Zhuang, Y., and A. M. Weiner. 1989. A compensatory base change in human U2 snRNA can suppress a branch site mutation. Genes Dev. 3:1545-1552.
    • (1989) Genes Dev. , vol.3 , pp. 1545-1552
    • Zhuang, Y.1    Weiner, A.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.