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1
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0028295796
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Review: resonance energy transfer—methods and applications
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of outstanding interest, This is a thorough review emphasizing methods and applications different from those selected for the present review. An extensive selected bibliography of recent as well as earlier literature is provided.
-
(1994)
Anal Biochem
, vol.218
, pp. 1-13
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-
Wu1
Brand2
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2
-
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0028155190
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Molecular mechanisms and quantitative models of variable photosystem II fluorescence
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(1994)
Photochem Photobiol
, vol.60
, pp. 1-23
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-
Dau1
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5
-
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0017795758
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Fluorescence energy transfer as a spectroscopic ruler
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(1978)
Annu Rev Biochem
, vol.47
, pp. 819-846
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Stryer1
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6
-
-
0027443875
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Fusion of artificial membranes with mammalian spermatozoa. Specific involvement of the equatorial segment after acrosome reaction
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(1993)
Eur J Biochem
, vol.217
, pp. 1001-1009
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-
Arts1
Kuiken2
Jager3
Hoekstra4
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8
-
-
0027479901
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Interaction of myelin basic protein with artificial membranes. Parameters governing binding, aggregation and dissociation
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(1993)
Eur J Biochem
, vol.211
, pp. 689-696
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-
ter Beest1
Hoekstra2
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15
-
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0028344133
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Theory for establishing proximity relations in biological membranes by excitation energy transfer measurements
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of special interest, A theoretical description of donor-acceptor distributions in biological membranes, with a thorough bibliography of the relevant earlier literature.
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(1994)
Biophys J
, vol.66
, pp. 683-693
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-
Yguerabide1
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16
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-
0028268955
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Transverse distance between the membrane and the agonist binding sites on the Torpedo acetylcholine receptor: a fluorescence study
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12-eosine as the acceptor-labeled lipid, the transverse distances (39 Å and 31 Å, respectively) between the acetyl choline binding sites on the receptor and the surface of the lipid membrane are determined. The FRET experiments position the binding sites in a pocket within each of the α subunits of the receptor.
-
(1994)
Biophys J
, vol.66
, pp. 674-682
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-
Valenzuela1
Weign2
Yguerabide3
Johnson4
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17
-
-
0027378261
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Structural characterization, membrane interactions, and specific assembly within phospholipid membranes of hydrophobic segments from Bacillus thuringiensis var. isrealensis cytolytic toxin
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(1993)
Biochemistry
, vol.32
, pp. 12363-12371
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Gazit1
Shai2
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18
-
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0027394475
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Spectroscopic and functional characterization of the putative transmembrane segment of the minK potassium channel
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(1993)
Biochemistry
, vol.32
, pp. 2371-2377
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-
Ben-Efraim1
Bach2
Shai3
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19
-
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0028206797
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The colicin E1 insertion-competent state: detection of structural changes using fluorescence resonance energy transfer
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(1994)
Biochemistry
, vol.33
, pp. 1108-1115
-
-
Steer1
Merrill2
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20
-
-
0027742906
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Interactions of liposomes and hydrophobically-modified poly-(N-isopropylacrylamides): an attempt to model the cytoskeleton
-
of special interest, An interesting example demonstrating how intermolecular and intramolecular FRET is used for observing changes in the state of aggregation in membranes.
-
(1993)
Biochem Biophys Acta
, vol.1153
, pp. 335-344
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-
Ringsdorf1
Sackmann2
Simon3
Winnik4
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21
-
-
0027467717
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Motional dynamics of functional cytochrome c delivered by low pH fusion into the intermembrane space of intact mitochondria
-
(1993)
Biochim Biophys Acta
, vol.1142
, pp. 194-202
-
-
Cortese1
Hackenbrock2
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24
-
-
0027513277
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Kinetics of structural changes of reconstituted skeletal muscle thin filaments observed by fluorescence resonance energy transfer
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(1993)
J Biol Chem
, vol.268
, pp. 7101-7106
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-
Miki1
Iio2
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26
-
-
0000901585
-
Lanthanide-dependent perturbations of luminescence in indolylethylenediaminetetraacetic acid-lanthanide chelate
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(1993)
J Phys Chem
, vol.97
, pp. 10326-10340
-
-
Kirk1
Wessels2
Prendergast3
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27
-
-
0027976675
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The solution structure of the four-way DNA junction at low-salt conditions: a fluorescence resonance energy transfer analysis
-
(1994)
Biophysical Journal
, vol.66
, pp. 99-109
-
-
Clegg1
Murchie2
Lilley3
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28
-
-
0027751968
-
Conformational distributions of a four-way DNA junction revealed by time-resolved fluorescence resonance energy transfer
-
of special interest, Time-resolved FRET measurements are used to analyze distributions of distances between donor and acceptor. The results indicate a distribution of flexible structures of the four-way DNA junction.
-
(1993)
Biochemistry
, vol.32
, pp. 13852-13860
-
-
Eis1
Millar2
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29
-
-
0027394243
-
Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer
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6 dependence of FRET is modulated by the helical structure of DNA.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 2994-2998
-
-
Clegg1
Murchie2
Zechel3
Lilley4
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30
-
-
0028270975
-
Fluorescence energy transfer as a probe for nucleic acid structures and sequences
-
of special interest, Several donor-acceptor pairs are tested for their applicability for use as structural probes of tertiary and secondary structures of DNA. The chemical synthesis of the derivatized DNA is described. FRET is measured by hybridizing two fluorescence oligonucleotides to adjacent specific sequences of a third oligonucleotide.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 920-928
-
-
Mergny1
Boutorine2
Garestier3
Belloc4
Rougé5
Bulychev6
Koshkin7
Bourson8
Lebedev9
Valuer10
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31
-
-
0027469785
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Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solution
-
of special interest, This article demonstrates how FRET measurements can be applied to derive information related to the thermodynamic stability and differentiability of single- and double-stranded structures of DNA.
-
(1993)
Biochemistry
, vol.32
, pp. 3095-3104
-
-
Morrison1
Stols2
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33
-
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0028459554
-
Luminescence resonance energy transfer
-
of special interest, The long-lived emission of lanthanides as donors is used to accurately measure the FRET efficiency. By observing the time-resolved fluorescence of the sensitized acceptor, the background fluorescence is totally suppressed. The method is demonstrated on doubly labeled DNA.
-
(1994)
J Am Chem Soc
, vol.116
, pp. 6029-6030
-
-
Selvin1
Rana2
Hearst3
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35
-
-
0027756209
-
Heterodimeric DNA-binding dyes designed for energy transfer: stability and applications of the DNA complexes
-
of special interest, Introduces an important series of bi-dye (donor-acceptor) molecules for FRET. These dyes show high FRET efficiencies when bound to DNA and lead to a large effective red shift to suppress background, thereby improving specific detection.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5720-5726
-
-
Benson1
Mathies2
Glazer3
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36
-
-
0027437664
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Stable fluorescent dye-DNA complexes in high sensitivity detection of protein-DNA interactions
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(1993)
J Biol Chem
, vol.268
, pp. 25229-25238
-
-
Rye1
Drees2
Nelson3
Glazer4
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39
-
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0028364259
-
Energy transfer analysis of Fos-Jun dimerization and DNA binding
-
of special interest, Two polypeptides, Fos and Jun, are labeled with fluorescein and rhodamine X on cysteine residues, and FRET enables analysis of the formation of heterodimeric complexes. DNA induces a conformational change observable by an increase in the FRET efficiency. The affinity and kinetics of protein—protein and protein complex—DNA interactions are investigated, and the exchange of protein subunits is demonstrated to be hindered by the interaction of the dimer protein with DNA.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 7360-7364
-
-
Patel1
Curran2
Kerppola3
-
41
-
-
0028298822
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Measurement by flow cytometry of genomic AT/GC ratio and genome size
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(1994)
Cytometry
, vol.16
, pp. 34-40
-
-
Vinogradov1
-
42
-
-
0028008328
-
Single UV excitation of Hoechst 33342 and ethidium bromide for simultaneous cell cycle analysis and viability determinations on in vitro cultures of murine B lymphocytes
-
(1994)
Cytometry
, vol.15
, pp. 28-34
-
-
Boltz1
Fischer2
Wicker3
Peterson4
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43
-
-
0027308234
-
Modification of oligosaccharide antenna flexibility induced by exoglycosidase trimming
-
of special interest, Quantitative FRET measurements are made directly on a HPLC column. This is a good example of the application of FRET to detect multiple heterogeneous conformations of oligosaccharides.
-
(1993)
Biochemistry
, vol.32
, pp. 7264-7270
-
-
Rice1
Wu2
Brand3
Lee4
-
49
-
-
0027220979
-
Homogeneous model immunoassay of thyroxine by phase-modulation fluorescence spectroscopy
-
of special interest, First demonstration of a truly time-resolved FRET immunoassay. This is an important development for assays in real biological fluids because the FRET immunoassay is sensitive, selective and independent from the fluorescence intensity, which can be extremely variable.
-
(1993)
Anal Biochem
, vol.213
, pp. 264-270
-
-
Ozinskas1
Malak2
Joshi3
Szmacinski4
Britz5
Thompson6
Koen7
Lakowicz8
-
51
-
-
0028241760
-
Photochemical labeling of membrane-associated and channel-forming domains of proteins directed by energy transfer
-
of special interest, The new technique described in this paper combines the distance selection of FRET with the specificity of affinity photolabeling. This significantly extends the possibilities for detecting locations on macromolecules.
-
(1994)
FEBS Lett
, vol.346
, pp. 127-131
-
-
Peng1
Alcaraz2
Klotz3
Kotzyba-Hilbert4
Goeldner5
-
54
-
-
0028023293
-
Quantitation of fluorescence energy transfer between cell surface proteins via fluorescence donor photobleaching kinetics
-
(1994)
Biophys J
, vol.67
, pp. 881-888
-
-
Young1
Arnette2
Roess3
Barisas4
-
55
-
-
0027398446
-
Correctly sorted molecules of a GPI-anchored protein are clustered and immobile when arrive at the apical surface of MDCK cells
-
of special interest, This paper demonstrates the use of photobleaching FRET for investigating the close association (as opposed to only co-localization) of donor- and acceptor-labeled molecules at different locations in a biological cell. The extent of molecular association, as the packaged molecules are delivered to final targtet locations, is followed in time.
-
(1993)
J Cell Biol
, vol.120
, pp. 353-358
-
-
Hannan1
Lisanti2
Rodriguez-Boulan3
Edidin4
-
56
-
-
84989751806
-
A PHOTOCHEMICAL TECHNIQUE TO ENHANCE SENSITIVITY OF DETECTION OF FLUORESCENCE RESONANCE ENERGY TRANSFER
-
of special interest, A new method of measuring photobleaching FRET is introduced, where the photodestruction of the acceptor, rather than the donor is detected (although the donor is photoexcited). The authors suggest that highly sensitive measurements of FRET efficiency can be accomplished.
-
(1994)
Photochemistry and Photobiology
, vol.59
, pp. 615-620
-
-
Mekler1
-
57
-
-
0027767493
-
Fluorescence lifetime imaging microscopy (FLIM): Spatial resolution of microstructures on the nanosecond time scale
-
of special interest, FLIM is a relatively new technique allowing temporal properties of fluorescence (in the nanosecond time range) to be measured directly and simultaneously at every location of a microscope image. This is an important technique when carrying out FRET measurements in imaging situations.
-
(1994)
Biophysical Chemistry
, vol.48
, pp. 221-239
-
-
Gadella1
Jovin2
Clegg3
-
58
-
-
0027256656
-
Fluorescence lifetime imaging microscopy (flimscopy)
-
of special interest, In this study, FLIM-FRET is used to detect endosome fusion in single cells. Between four and seven images are recorded with a charge-coupled device (CCD) camera at different time delays (smallest time delay = 5 ns).
-
(1993)
Biophys J
, vol.64
, pp. 676-685
-
-
Oida1
Sako2
Kusumi3
-
59
-
-
0027246341
-
Spatially resolved dynamics of cAMP and protein kinase A subunits in aplysia sensory neurons
-
of special interest, FRET is used to distinguish the presence of closely associated subunits, as opposed to simple co-localization, and follows the movement of the separate subunits to different locations in the cell. The degree of subunit association measured by FRET is employed as an assay for intercellular cAMP concentration.
-
(1993)
Science
, vol.260
, pp. 222-226
-
-
Bacskai1
Hochner2
Mahaut-Smith3
Adams4
Kaang5
Kandel6
Tsien7
-
61
-
-
0028081903
-
Propidium iodide and the thiol-specific reagent dacm as a dye pair for fluorescence resonance energy transfer analysis: An application to mouse sperm chromatin
-
of special interest, The state of condensation of sperm chromatin is followed by observing (in a microscope) the efficiency of FRET between a DNA intercalator and a dye reagent that is specific for thiol groups.
-
(1994)
Cytometry
, vol.15
, pp. 106-116
-
-
Bottiroli1
Croce2
Pellicciari3
Ramponi4
-
64
-
-
0028072693
-
Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer
-
of special interest, FRET is used to measure the extent of bending in DNA and RNA helices resulting from the insertion of ‘bulges’ (unpaired nucleotides in one of the strands). The efficiency of FRET between dyes conjugated to the 5′ ends is measured by three different methods. The dependence of the angle of the kinked distortion on the number of unpaired nucleotides in the bulge is estimated.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 11660-11664
-
-
Gohlke1
Murchie2
Lilley3
Clegg4
-
65
-
-
0027973506
-
A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements
-
of special interest, A three-dimensional model of the catalytic hammerhead RNA is determined by comparing the efficiency of FRET of several doubly labeled RNA molecules that are labeled at different positions. The model corresponding best to the fluorescence results in a ‘Y’ structure, with two helices (I and II) in close proximity, and helix III pointing away.
-
(1994)
Science
, vol.266
, pp. 785-789
-
-
Tuschl1
Gohlke2
Jovin3
Westhof4
Eckstein5
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