Elusive affinities

Proteins: Structure, Function, and Bioinformatics

Volumn 21, Issue 1, 1995, Pages 30-39

  Janin, Joël ^a  

^a UNIVERSITÉ PARIS SACLAY   (France)

Author keywords

accessible surface area; entropy; heat capacity changes; microcalorimetry; protein DNA interaction; protein protein interaction

Indexed keywords

ARTICLE; BINDING AFFINITY; COMPLEX FORMATION; DISSOCIATION; DNA PROTEIN COMPLEX; ENTHALPY; ENTROPY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; THERMODYNAMICS;

DNA; ENERGY TRANSFER; HEAT; MICROCHEMISTRY; MODELS, THEORETICAL; PROTEIN FOLDING; PROTEINS; SOLUBILITY; THERMODYNAMICS;

EID: 0028861437     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.340210105     Document Type: Article

References (82)

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2. The structure of protein‐protein recognition sites
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4. Structural energetics of peptide recognition: Angiotensin II/Antibody binding
5. Entropy in biological binding processes: Estimation of translational entropy loss
6. Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamicsl free energy perturbation approaches
7. Calorimetric studies of the binding of Streptomyces subtilisin inhibitor to subtilisin of Bacillus subtilis strain N′
8. Thermodynamics of the binding of Streptomyces subtilisin inhibitor to α‐chymotrypsin
9. Three‐dimensional structure and thermodynamics of antigen binding by anti‐lysozyme antibodies
10. Bound water molecules and conformational stabilization help mediate an antigen‐antibody association
11. Isothermal titration calorimetric study of the association of hen egg lysozyme and the anti‐lysozyme antibody HyHEL5
12. Thermodynamics of monosaccharide binding to concanavalin A, a pea (Pisum sativum) lectin, and lentil (Lens culinaris) lectin
13. Thermodynamics of lectin‐carbohydrate interactions. Titration calorimetry measurements of the binding of N‐linked carbohydrates and ovalbumin to concanavalin A
14. Thermodynamics of Cro protein‐DNA interaction, Proc
15. A thermodynamic study of the trp repressor‐operator interaction
16. Scanning microcalorimetry in studying temperature‐induced changes in proteins
17. Stability of protein structure and hydrophobic interaction
18. Some factors in the interpretation of protein denaturation
19. Solvent accessibility of groups in proteins
20. Electrostatic interactions in macromolecules
21. Side‐chain entropy opposes α‐helix formation but rationalizes experimentally determined helix‐forming propensities
22. Protein side‐chain conformational entropy derived from fusion data‐comparison with other empirical scales
23. The price of lost freedom: Entropy of bimolecular complex formation
24. Entropic contributions to rate accelerations in enzymic and intramolecular reactions and the chelate effect
25. Cooperativity in protein‐protein association. The structure and stability of the actin filament
26. The contribution of vibrational entropy to molecular association
27. Heat capacity and entropy changes in processes involving proteins
28. Protein‐protein recognition analyzed by docking simulation
29. Empirical scale of side chain conformational entropy in protein folding
30. Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides
31. Binding of the recombinant proteinase inhibitor Eglin C from leech Hirudo medicinalis to human leukocyte elastase, bovine α‐chymotrypsin and subtilisin Carlsberg: Thermodynamic study
32. Directed mutagenesis of barnase‐barstar recognition
33. Contribution of hydration and non‐covalent interactions to the heat capacity effect on protein unfolding
34. Use of liquide hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of non polar and polar surface from water
35. Three‐dimensional structure of an antibody‐antigen complex
36. The high‐resolution X‐ray crystal structure of the complex formed between subtilisin Carlsberg and Eglin C, an elastase inhibitor from the leech Hirudo medicinalis. Structural analysis, subtilisin structure and interface geometry
37. Recognition between a bacterial ribonuclease, barnase, and its natural inhibitor, barstar
38. Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8 Å resolution
39. X‐Ray crystal structure of the complex of human leukocyte elastase (Pmn elastase) and the third domain of the turkey ovomucoid inhibitor
40. Refined crystal structure of potato inhibitor complex of carboxypeptidase A at 2.5 Å resolution
41. Structure of the complex formed by bovine trypsin and bovine pancreatic trypsin inhibitor. II Crystallographic refinement at 1.9 Å resolution
42. The geometry of the reactive site and of the peptide groups in trypsin, trypsinogen and its complexes with inhibitors
43. Refined 2.5 Å X‐ray crystal structure of the complex formed by porcine kallikrein A and the bovine pancreatic trypsin inhibitor. Crystallization, Patterson search, structure determination, refinement, structure and comparison with its components and with the bovine trpsin‐bovine trypsin inhibitor complex
44. Crystal and molecular structures of α‐chymotrypsin with its inhibitor turkey ovomucoid third domain at 1.8 Å resolution
45. Molecular recognition at the active site of subtilisin BPN': Crystallographic studies using genetically engineered proteinaceous inhibitor SSI (Streptomyces subtilisin inhibitor)
46. The refined 1.6 angstroms resolution crystal structure of the complex formed between porcine beta‐trypsin and MCTI‐A, a trypsin inhibitor of squash family
47. Crystal and molecular structure of the bovine alpha‐chymotrypsin‐Eglin C complex at 2.0 Å resolution
48. Structural comparison of two serine proteinase‐protein inhibitor complexes. Eglin C‐subtilisin Carlsberg and C12‐subtilisin novo
49. Three‐dimensional structure of the complex between pancreatic secretory inhibitor (Kazal type) and trypsinogen at 1.8 Å resolution. Structure solution, crystallographic refinement and preliminary structural interpretation
50. Structure of the hirulog 3‐thrombin complex and nature of the S' subsites of substrates and inhibitors
51. The refined structure of the hirudin‐thrombin complex
52. Three‐dimensional structure of a heteroclitic antigenantibody cross‐reaction complex
53. Three‐dimensional structure of an antigen‐antibody complex at 2.8 Å resolution
54. Structure of an antibody‐antigen complex. Crystal structure of the HyHEL‐10 Fablysozyme complex
55. Refined crystal structure of the influenza virus N9 neuraminidase‐NC41 Fab complex
56. Crystal Structure of a complex between electron transfer partners, cytochrome c peroxidase and cytochrome c
57. Gel with glycerol kinase
58. Crystallographic refinement and atomic models of a human Fe fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9 and 2.8 Å resolution
59. Atomic structure of the actin:DNAse I complex
60. The structure of crystalline profiling‐beta‐actin
61. Nase I‐induced DNA conformation. 2 Å structure of a DNAse I‐octamer complex
62. Crystal structure of the met repressor‐operator complex at 2.8 Å resolution reveals DNA recognition by β‐strands
63. Structures of ternary complexes of rat DNA polymerase β, a DNA template‐primer, and ddCTP
64. The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: Crystal structure of the protein‐DNA complex
65. DNA recognition by Ga14: Structure of a protein/DNA complex
66. Zinc finger‐DNA recognition: Crystal structure of a Zif268‐DNA complex at 2.1 Å
67. Crystal structure of an engrailed homeodomain‐DNA complex at 2.8 Å remsolution: A framework for understanding homeodomain‐DNA interactions
68. Hin recombinase bound to DNA: The origin of specificity in major and minor groove interactions
69. The complex between phage 434 repressor DNA‐binding domain and operator site OR 3: Structural differences between consensus and non‐consensus half‐sites
70. The phage 434 Cro/OR1 complex at 2.5 Å resolution
71. Crystal structure of a CAP‐DNA complex: The DNA is bent by 90 degrees
72. Crystal structure at 1.7 Å of the bovine papillomavirus‐l E2 DNA‐binding domain bound to its DNA target
73. Refined 1.8 Å crystal structure of the lambda repressor‐operator complex
74. Crystal structure of Trp repressor operator complex at atomic resolution
75. The crystal structure of Eco RV endonuclease and of its complexes with cognate and noncognate DNA fragments
76. Calculation of the free energy of association for protein complexes
77. Solvent rearrangement in an antigen‐antibody interface introduced by site‐directed mutagenesis of the antibody combining site
78. Surface, subunit interfaces and interior of oligomeric proteins
79. Role of the hydrophobic effect in stability of site‐specific protein‐DNA complexes
80. Coupling of local folding to site specific binding of proteins to DNA