Structure-function analysis of 3′ → 5′-exonuclease of DNA polymerases

Methods in Enzymology

Volumn 262, Issue C, 1995, Pages 363-385

  Derbyshire, Victoria ^a   Pinsonneault, Julia K ^a   Joyce, Catherine M ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME STRUCTURE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; SITE DIRECTED MUTAGENESIS;

AMINO ACID SEQUENCE; BINDING SITES; CATIONS, DIVALENT; CLONING, MOLECULAR; COMPARATIVE STUDY; DEOXYADENINE NUCLEOTIDES; DNA POLYMERASE I; DNA-DIRECTED DNA POLYMERASE; EXODEOXYRIBONUCLEASES; HYDROGEN BONDING; KINETICS; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PHOSPHORUS RADIOISOTOPES; POINT MUTATION; PROTEIN CONFORMATION; RADIOISOTOPE DILUTION TECHNIQUE; RECOMBINANT PROTEINS; SUBSTRATE SPECIFICITY; SUPPORT, U.S. GOV'T, P.H.S.;

ESCHERICHIA COLI;

EID: 0028860568     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/0076-6879(95)62030-3     Document Type: Article

References (45)

1. Kornberg, A., Baker, T.A., DNA Replication., 1992, Freeman, San Francisco, 113.
2. Scheuermann, R.H., Echols, H., Proc. Natl. Acad. Sci. USA, 81, 1984, 7747.
3. Ollis, D.L., Brick, P., Hamlin, R., Xuong, N.G., Steitz, T.A., Nature, 313, 1985, 762.
4. Beese, L.S., Derbyshire, V., Steitz, T.A., Science, 260, 1993, 352.
5. Freemont, P.S., Friedman, J.M., Beese, L.S., Sanderson, M.R., Steitz, T.A., Proc. Natl. Acad. Sci. USA, 85, 1988, 8924.
6. Beese, L., Steitz, T.A., EMBO J., 10, 1991, 25.
7. Derbyshire, V., Freemont, P.S., Sanderson, M.R., Beese, L., Friedman, J.M., Joyce, C.M., Steitz, T.A., Science, 240, 1988, 199.
8. Derbyshire, V., Grindley, N.D.F., Joyce, C.M., EMBO J., 10, 1991, 17.
9. Bernad, A., Blanco, L., Lázaro, J.M., Martin, G., Salas, M., Cell, 59, 1989, 219.
10. Braithwaite, D.K., Ito, J., Nucleic Acids Res., 21, 1993, 787.
11. Morrison, A., Bell, J.B., Kunkel, T.A., Sugino, A., Proc. Natl. Acad. Sci. USA, 88, 1991, 947.
12. Blanco, L., Bernad, A., Salas, M., Gene, 112, 1992, 139.
13. J. Wang, P. Yu, W. H. Konigsberg, and T. A. Steitz, unpublished observations (1993).
14. Joyce, C.M., Steitz, T.A., Ann. Rev. Biochem., 63, 1994, 777.
15. Kunkel, T.A., Roberts, J.D., Zakour, R.A., Methods Enzymol., 154, 1987, 367.
16. Joyce, C.M., Kelley, W.S., Grindley, N.D.F., J. Biol. Chem., 257, 1982, 1958.
17. Polesky, A.H., Steitz, T.A., Grindley, N.D.F., Joyce, C.M., J. Biol. Chem., 265, 1990, 14,579.
18. C. M. Joyce and V. Derbyshire, this volume, [1].
19. Hanahan, D., J. Mol. Biol., 166, 1983, 557.
20. C. M. Joyce, unpublished observations (1987).
21. Joyce, C.M., Grindley, N.D.F., Proc. Natl. Acad. Sci. USA, 80, 1983, 1830.
22. Setlow, P., Methods. Enzymol., 29, 1974, 3.
23. Bradford, M.M., Anal. Biochem., 72, 1976, 248.
24. Freemont, P.S., Ollis, D.L., Steitz, T.A., Joyce, C.M., Proteins, 1, 1986, 66.
25. Bryant, F.R., Johnson, K.A., Benkovic, S.J., Biochemistry, 22, 1983, 3537.
26. Cheng, C.-H., Kuchta, R.D., Biochemistry, 32, 1993, 8568.
27. Steitz, T.A., Steitz, J.A., Proc. Natl. Acad. Sci. USA, 90, 1993, 6498.
28. Kuchta, R.D., Benkovic, P., Benkovic, S.J., Biochemistry, 27, 1988, 6716.
29. Catalano, C.E., Allen, D.J., Benkovic, S.J., Biochemistry, 29, 1990, 3612.
30. Reha-Krantz, L.J., Stocki, S., Nonay, R.L., Dimayuga, E., Goodrich, L.D., Konigsberg, W.H., Spicer, E.K., Proc. Natl. Acad. Sci. USA, 88, 1991, 2417.
31. Reha-Krantz, L.J., Gene, 112, 1992, 133.
32. Eger, B.T., Kuchta, R.D., Carroll, S.S., Benkovic, P.A., Dahlberg, M.E., Joyce, C.M., Benkovic, S.J., Biochemistry, 30, 1991, 1441.
33. Patel, S.S., Wong, I., Johnson, K.A., Biochemistry, 30, 1991, 511.
34. Frey, M.W., Nossal, N.G., Capson, T.L., Benkovic, S.J., Proc. Natl. Acad. Sci. USA, 90, 1993, 2579.
35. Gibbs, J.S., Weisshart, K., Digard, P., de Bruynkops, A., Coen, D.M., Mol. Cell. Biol., 11, 1991, 4786.
36. Soengas, M.S., Esteban, J.A., Lázaro, J.M., Bernad, A., Blasco, M.A., Salas, M., Blanco, L., EMBO J., 11, 1992, 4227.
37. Barnes, M.H., Hammond, R.A., Kennedy, C.C., Mack, S.L., Brown, N.C., Gene, 111, 1992, 43.
38. Foury, F., Vanderstraeten, S., EMBO J., 11, 1992, 2717.
39. Joyce, C.M., Sun, X.C., Grindley, N.D.F., J. Biol. Chem., 267, 1992, 24,485.
40. Tabor, S., Richardson, C.C., Proc. Natl. Acad. Sci. USA, 84, 1987, 4767.
41. Tabor, S., Richardson, C.C., J. Biol. Chem., 264, 1989, 6447.
42. Clark, J.M., Joyce, C.M., Beardsley, G.P., J. Mol. Biol., 198, 1987, 123.
43. Liao, X., Wise, J.A., Gene, 88, 1990, 107.
44. Newton, C.R., Graham, A., Heptinstall, I.E., Powell, S.J., Summers, C., Kalsheker, N., Nucleic Acids Res., 17, 1989, 2503.
45. Sarkar, G., Cassady, J., Bottema, C.D.K., Sommer, S.S., Anal. Biochem., 186, 1990, 64.