메뉴 건너뛰기




Volumn 11, Issue 4, 1995, Pages 402-408

The VITESSE algorithm for rapid exact multilocus linkage analysis via genotype set–recoding and fuzzy inheritance

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ALLELE; ARTICLE; COMPUTER PROGRAM; DISEASE TRANSMISSION; GENE LOCUS; GENE MAPPING; GENETIC ANALYSIS; GENETIC MARKER; GENOTYPE; HUMAN; HUMAN CELL; INHERITANCE; POINT MUTATION; PRIORITY JOURNAL;

EID: 0028790963     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng1295-402     Document Type: Article
Times cited : (423)

References (48)
  • 1
    • 0027722233 scopus 로고
    • A second generation linkage map of the human genome based on highly informative microsatellfte loci
    • Weissenbach, J. A second generation linkage map of the human genome based on highly informative microsatellfte loci. Gene 135, 275-278 (1993).
    • (1993) Gene , vol.135 , pp. 275-278
    • Weissenbach, J.1
  • 2
    • 0028365909 scopus 로고
    • Integrated human genome-wide maps constructed using the CEPH reference panel
    • Buetow, K. H. et al. Integrated human genome-wide maps constructed using the CEPH reference panel. Nature Genet, 6, 391-393 (1994).
    • (1994) Nature Genet , vol.6 , pp. 391-393
    • Buetow, K.H.1
  • 3
    • 0027942568 scopus 로고
    • A comprehensive human linkage map with centimorgan density. Cooperative Human Linkage Center (CHLC)
    • Murray J. C. et al. A comprehensive human linkage map with centimorgan density. Cooperative Human Linkage Center (CHLC). Science 265, 2049-2054 (1994).
    • (1994) Science , vol.265 , pp. 2049-2054
    • Murray, J.C.1
  • 4
    • 0028231090 scopus 로고
    • The 1993-94 Généthon human genetic linkage map
    • Gyapay, G. et al. The 1993-94 Généthon human genetic linkage map. Nature Genet 7, 246-339(1994).
    • (1994) Nature Genet , vol.7 , pp. 246-339
    • Gyapay, G.1
  • 5
    • 0028343233 scopus 로고
    • Automated construction of genetic linkage maps using an expert system (MultiMap): A human genome linkage map
    • Matise, T. C., Pertin, M. & Chakravarti, A Automated construction of genetic linkage maps using an expert system (MultiMap): a human genome linkage map. Nature Genet. 6, 384-390 (1994).
    • (1994) Nature Genet , vol.6 , pp. 384-390
    • Matise, T.C.1    Pertin, M.2    Chakravarti, A.3
  • 6
    • 0026446099 scopus 로고
    • A second-generation linkage map of the human genome
    • Wéissenbach, J. et al. A second-generation linkage map of the human genome. Nature 350, 794-801 (1992).
    • (1992) Nature , vol.350 , pp. 794-801
    • Wéissenbach, J.1
  • 7
    • 77957177614 scopus 로고
    • Information gain in joint linkage analysis
    • Thompson, EA Information gain in joint linkage analysis. IMA J. Math. Appl. Med. Biol. 1, 31-49 (1984).
    • (1984) IMA J. Math. Appl. Med. Biol , vol.1 , pp. 31-49
    • Thompson, E.A.1
  • 8
    • 0021850103 scopus 로고
    • Multilocus linkage analysis in humans: Detection of linkage and estimation of recombination
    • Lathrop, G. M., Lalouei, J. M., Julier, C. & Ott, J. Multilocus linkage analysis in humans: detection of linkage and estimation of recombination. Am. J. hum. Genet. 37, 482-498 (1985).
    • (1985) Am. J. hum. Genet , vol.37 , pp. 482-498
    • Lathrop, G.M.1    Lalouei, J.M.2    Julier, C.3    Ott, J.4
  • 11
    • 0029062606 scopus 로고
    • Computer programs for multilocus haplotyping of general pedigrees
    • Weeks, D. E., Sobel, E., O'Connell, J. R. & Lange, K. Computer programs for multilocus haplotyping of general pedigrees. Am. J. hum. Genet 56, 1506-1507 (1995).
    • (1995) Am. J. hum. Genet , vol.56 , pp. 1506-1507
    • Weeks, D.E.1    Sobel, E.2    O'Connell, J.R.3    Lange, K.4
  • 12
    • 0022792421 scopus 로고
    • Estimating the power of a proposed linkage study: A practical computer simulation approach
    • Boehnke, M. Estimating the power of a proposed linkage study: a practical computer simulation approach. Am. J. hum. Genet. 39, 513-527 (1986).
    • (1986) Am. J. hum. Genet , vol.39 , pp. 513-527
    • Boehnke, M.1
  • 13
    • 0039513062 scopus 로고
    • Computer-simulation methods in human linkage analysis
    • Ott, J. Computer-simulation methods in human linkage analysis. Proc. natn. Acad. Sci. U. S. A 86, 4175-4178 (1989).
    • (1989) Proc. natn. Acad. Sci. U.S. A , vol.86 , pp. 4175-4178
    • Ott, J.1
  • 14
    • 0000801438 scopus 로고
    • SUNK: A general simulation program for linkage analysis
    • Weeks, D. E., Ott, J. & Lathrop, G. M. SUNK: a general simulation program for linkage analysis. Am. J. hum. Genet 47, A204 (1990).
    • (1990) Am. J. hum. Genet , vol.47
    • Weeks, D.E.1    Ott, J.2    Lathrop, G.M.3
  • 15
    • 0000814464 scopus 로고
    • REGRESS: A computer program including the regressive approach into the LINKAGE programs
    • Demenás, F. & Lathrop, M. REGRESS: a computer program including the regressive approach into the LINKAGE programs. Genet. Epidemiol. 11, 291 (1994).
    • (1994) Genet. Epidemiol , vol.11 , pp. 291
    • Demenás, F.1    Lathrop, M.2
  • 16
    • 0015183542 scopus 로고
    • A general model for the genetic analysis of pedigree data
    • Elston, R. C. & Stewart, J, A general model for the genetic analysis of pedigree data. Hum. Hered. 21, 523-642 (1971).
    • (1971) Hum. Hered , vol.21 , pp. 523-642
    • Elston, R.C.1    Stewart, J.2
  • 17
    • 0022646961 scopus 로고
    • Construction of human linkage maps: Likelihood calculations for multilocus analysis
    • Lathrop, G. M., Lalouei, J. M. & White, R. L. Construction of human linkage maps: likelihood calculations for multilocus analysis. Genet. Epidemiol. 3, 39-52 (1986).
    • (1986) Genet. Epidemiol , vol.3 , pp. 39-52
    • Lathrop, G.M.1    Lalouei, J.M.2    White, R.L.3
  • 18
    • 0028857541 scopus 로고
    • Rapid multipoint linkage analysis of recessive traits in nuclear families, including homozygosity mapping
    • Kiuglyak, L, Daly, M. J. & Lander, E. S. Rapid multipoint linkage analysis of recessive traits in nuclear families, including homozygosity mapping. Am. J. hum. Genet. 58, 519-527 (1995).
    • (1995) Am. J. hum. Genet , vol.58 , pp. 519-527
    • Kiuglyak, L.1    Daly, M.J.2    Lander, E.S.3
  • 19
    • 0027409209 scopus 로고
    • A genetic map of chromosome 20q12-q13. 1: Multiple highly polymorphic microsateHite and RFLP markers linked to the maturity-onset diabetes of the young (MODY) locus
    • Rothschild, C. B. et al. A genetic map of chromosome 20q12-q13. 1: Multiple highly polymorphic microsateHite and RFLP markers linked to the maturity-onset diabetes of the young (MODY) locus. Am. J. hum. Genet 52, 110-123 (1993).
    • (1993) Am. J. hum. Genet , vol.52 , pp. 110-123
    • Rothschild, C.B.1
  • 20
    • 0000803318 scopus 로고
    • Construction of muttilocus genetic linkage maps in humans
    • Lander, E. S. & Green, P. Construction of muttilocus genetic linkage maps in humans. Proc. natn. Acad. Sd. U. S. A 84, 2363-2367 (1987).
    • (1987) Proc. natn. Acad. Sd. U.S. A , vol.84 , pp. 2363-2367
    • Lander, E.S.1    Green, P.2
  • 21
    • 0027406233 scopus 로고
    • A procedure for combining two-point scores Into a summary multipoint map
    • Curtfs, D. & Gurling, H. A procedure for combining two-point scores Into a summary multipoint map. Hum. Hered. 43, 173-185 (1993).
    • (1993) Hum. Hered , vol.43 , pp. 173-185
    • Curtfs, D.1    Gurling, H.2
  • 22
    • 0026329112 scopus 로고
    • A random walk method for computing genetic location scores
    • Lange, K. & Sobel, E. A random walk method for computing genetic location scores. Am. J. hum. Genet 49, 1320-1334 (1991).
    • (1991) Am. J. hum. Genet , vol.49 , pp. 1320-1334
    • Lange, K.1    Sobel, E.2
  • 23
    • 0026322068 scopus 로고
    • Localization of an ataxia-telangiectasia locus to a 3-cM interval on chromosome 11q23: Linkage analysis of 111 families by an international consortium
    • Foroud, T. et al. Localization of an ataxia-telangiectasia locus to a 3-cM interval on chromosome 11q23: Linkage analysis of 111 families by an international consortium. Am. J. hum. Genet. 49, 1263-1279 (1991).
    • (1991) Am. J. hum. Genet , vol.49 , pp. 1263-1279
    • Foroud, T.1
  • 24
    • 0026528757 scopus 로고
    • A Gibbs sampling approach to linkage analysis
    • Thomas, D. C. & Cortessis, V. A Gibbs sampling approach to linkage analysis. Hum. Hered. 42, 63-76 (1992).
    • (1992) Hum. Hered , vol.42 , pp. 63-76
    • Thomas, D.C.1    Cortessis, V.2
  • 25
    • 0027740977 scopus 로고
    • Sequential imputation and multipoint linkage analysis
    • Kong, A, Cox, N., Frigge, M. & Irwin, M. Sequential imputation and multipoint linkage analysis. Genet. Epidemiol. 10, 483-488 (1993).
    • (1993) Genet. Epidemiol , vol.10 , pp. 483-488
    • Kong, A.1    Cox, N.2    Frigge, M.3    Irwin, M.4
  • 26
    • 0026668039 scopus 로고
    • A Monte Carlo method for combined segregation and linkage analysis
    • Guo, S. W. & Thompson, EA. A Monte Carlo method for combined segregation and linkage analysis. Am. J. hum. Genet 51, 1111-1126 (1992).
    • (1992) Am. J. hum. Genet , vol.51 , pp. 1111-1126
    • Guo, S.W.1    Thompson, E.A.2
  • 27
    • 0027996246 scopus 로고
    • Sequential imputation for multilocus linkage analysis
    • Irwin, M., Cox, N. & Kong, A. Sequential imputation for multilocus linkage analysis. Proc. natn. Acad. Sci. U. S. A 91, 11684-11688 (1994).
    • (1994) Proc. natn. Acad. Sci. U.S. A , vol.91 , pp. 11684-11688
    • Irwin, M.1    Cox, N.2    Kong, A.3
  • 28
    • 84966170495 scopus 로고
    • Analysis of Human
    • Johns Hopkins University Press, Baltimore
    • Ott, J. Analysis of Human Genetic Unkage (Revised Edition) (Johns Hopkins University Press, Baltimore, 1991).
    • (1991) Genetic Unkage (Revised Edition)
    • Ott, J.1
  • 29
    • 0018075145 scopus 로고
    • A simple scheme for the analysis of HLA linkages in pedigrees
    • Ott, J. A simple scheme for the analysis of HLA linkages in pedigrees. Ann. hum. Genet. 42, 255-257 (1978).
    • (1978) Ann. hum. Genet , vol.42 , pp. 255-257
    • Ott, J.1
  • 30
    • 0021947842 scopus 로고
    • An algorithm to improve the computational efficiency of genetic linkage analysis
    • Bravemnan, M. S. An algorithm to improve the computational efficiency of genetic linkage analysis. Comput. Oiomed. Res. 18, 24-36 (1985).
    • (1985) Comput. Oiomed. Res , vol.18 , pp. 24-36
    • Bravemnan, M.S.1
  • 31
    • 0024586095 scopus 로고
    • Efficient computation of lod scores: Genotype elimination, genotype redefinition, and hybrid maximum likelihood algorithms
    • Lange, K. & Weeks, D. E. Efficient computation of lod scores: genotype elimination, genotype redefinition, and hybrid maximum likelihood algorithms. Ann. hum. Genet. 53, 67-83 (1989).
    • (1989) Ann. hum. Genet , vol.53 , pp. 67-83
    • Lange, K.1    Weeks, D.E.2
  • 33
    • 0021344005 scopus 로고
    • Easy calculations of lod scores and genetic risks on small computers
    • Lathrop, G. M. & Lalouei, J.-M. Easy calculations of lod scores and genetic risks on small computers. Am. J. hum. Genet. 36, 460-465 (1984).
    • (1984) Am. J. hum. Genet , vol.36 , pp. 460-465
    • Lathrop, G.M.1    Lalouei, J.-M.2
  • 34
    • 0023933932 scopus 로고
    • Efficient computations in multilocus linkage analysis. Am
    • Lathrop, G. M. & Lalouei, J. M. Efficient computations in multilocus linkage analysis. Am. J. hum. Genet. 42, 498-505 (1988).
    • (1988) J. hum. Genet , vol.42 , pp. 498-505
    • Lathrop, G.M.1    Lalouei, J.M.2
  • 35
    • 0023259678 scopus 로고
    • An algorithm for automatic genotype elimination
    • Łange, K. & Goradia, T. M. An algorithm for automatic genotype elimination. Am. J. hum. Genet. 40, 250-256 (1987).
    • (1987) Am. J. hum. Genet , vol.40 , pp. 250-256
    • Łange, K.1    Goradia, T.M.2
  • 37
    • 0027729003 scopus 로고
    • Unkage analysis in familial Alzheimer disease: Description of the Duke and Boston data sets
    • Pericak-Vance, MA et al. Unkage analysis in familial Alzheimer disease: description of the Duke and Boston data sets. Genet. Epidemiol. 10, 361-364 (1993).
    • (1993) Genet. Epidemiol , vol.10 , pp. 361-364
    • Pericak-Vance, M.A.1
  • 38
    • 0029150716 scopus 로고
    • A familial Alzheimer's disease locus on chromosome 1
    • Levy-Lahad, E. et al. A familial Alzheimer's disease locus on chromosome 1, Science 269, 970-973 (1995).
    • (1995) Science , vol.269 , pp. 970-973
    • Levy-Lahad, E.1
  • 39
    • 0028145745 scopus 로고
    • A gene defect that causes conduction system disease and dilated cardiomyopathy maps to chromosome 1 p1-1 q1
    • Kass, S. et al. A gene defect that causes conduction system disease and dilated cardiomyopathy maps to chromosome 1 p1-1 q1. Nature Genet. 7, 546-551 (1994).
    • (1994) Nature Genet , vol.7 , pp. 546-551
    • Kass, S.1
  • 40
    • 0027996052 scopus 로고
    • The Arthritis and Rheumatism Council's National Repository of Family Material: Pedigrees from the first 100 rheumatoid arthritis families containing affected sibling pairs
    • Worthington, J. et al. The Arthritis and Rheumatism Council's National Repository of Family Material: pedigrees from the first 100 rheumatoid arthritis families containing affected sibling pairs. Br. J. Rheumatol. 33, 970-976(1994).
    • (1994) Br. J. Rheumatol , vol.33 , pp. 970-976
    • Worthington, J.1
  • 41
    • 0027999259 scopus 로고
    • A gene for distal arthrogryposis type 1 maps to the pericentromeric region of chromosome 9
    • Bamshad, M. et al. A gene for distal arthrogryposis type 1 maps to the pericentromeric region of chromosome 9. Am. J. hum. Genet 55, 1153-1158 (1994).
    • (1994) Am. J. hum. Genet , vol.55 , pp. 1153-1158
    • Bamshad, M.1
  • 42
    • 0027377709 scopus 로고
    • Linkage mapping of dopa-responsive dystonia (DRD) to chromosome 14q
    • Nygaard, T. G. et al. Linkage mapping of dopa-responsive dystonia (DRD) to chromosome 14q. Nature Genet 5, 386-391 (1993).
    • (1993) Nature Genet , vol.5 , pp. 386-391
    • Nygaard, T.G.1
  • 43
    • 0028151448 scopus 로고
    • Hereditary progressive dystonia with marked diurnal fluctuation caused by mutations in the GTP cyclohydrolase I gene
    • Ichinose, H. et al. Hereditary progressive dystonia with marked diurnal fluctuation caused by mutations in the GTP cyclohydrolase I gene. Nature Genet 8, 236-242(1994).
    • (1994) Nature Genet , vol.8 , pp. 236-242
    • Ichinose, H.1
  • 45
    • 0016732662 scopus 로고
    • Extensions to pedigree analysis I. Ukelihood calculations for simple and complex pedigrees
    • Lange, K. & Elston, R. C. Extensions to pedigree analysis I. Ukelihood calculations for simple and complex pedigrees. Hum. Hered. 25, 95-105 (1975).
    • (1975) Hum. Hered , vol.25 , pp. 95-105
    • Lange, K.1    Elston, R.C.2
  • 46
    • 0017192186 scopus 로고
    • A computer program for linkage analysis of general human pedigrees
    • Ott, J. A computer program for linkage analysis of general human pedigrees. Am. J. hum. Genet 28, 528-529 (1976).
    • (1976) Am. J. hum. Genet , vol.28 , pp. 528-529
    • Ott, J.1
  • 47
    • 0027529027 scopus 로고
    • Multipoint mapping under genetic interference
    • Weeks, D. E., Lathrop, G. M. & Ott, J. Multipoint mapping under genetic interference. Hum. Hered. 43, 86-97 (1993).
    • (1993) Hum. Hered , vol.43 , pp. 86-97
    • Weeks, D.E.1    Lathrop, G.M.2    Ott, J.3
  • 48
    • 0028353343 scopus 로고
    • Detection of genetic interference: Simulation studies and mouse data
    • Weeks, D. E., Ott, J. & Lathrop, G. M. Detection of genetic interference: simulation studies and mouse data. Genetics 136, 1217-1226 (1994).
    • (1994) Genetics , vol.136 , pp. 1217-1226
    • Weeks, D.E.1    Ott, J.2    Lathrop, G.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.