MATRIX SEARCH 1.0: A computer program that scans DNA sequences for transcriptional elements using a database of weight matrices

Bioinformatics

Volumn 11, Issue 5, 1995, Pages 563-566

  Chen, Qing K ^a   Hertz, Gerald Z ^b   Stormo, Gary D ^b  

^a UNIVERSITY OF COLORADO   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; GENETIC TRANSCRIPTION; INFORMATION RETRIEVAL; PRIORITY JOURNAL;

BASE SEQUENCE; BINDING SITES; DATABASES, FACTUAL; DNA; GENES, REGULATOR; MOLECULAR SEQUENCE DATA; SEQUENCE ALIGNMENT; SOFTWARE; SUPPORT, U.S. GOV'T, P.H.S.; TRANSCRIPTION FACTORS;

EID: 0028784743     PISSN: 13674803     EISSN: None     Source Type: Journal    
DOI: 10.1093/bioinformatics/11.5.563     Document Type: Article

References (9)

1. Ghosh, D. (1990) A relational database of transcription factors. Nucleic Acids Res., 18, 1749-1756.
2. Wingender, E. (1988) Compilation of transcription regulating proteins. Nucleic Acids Res., 16, 1879-1902.
3. Prestridge, D. and Stormo, G.D. (1993) SIGNAL SCAN 3.0' new database and program features. Comput. Applic. Biosci., 7, 203-206.
4. Hertz, G.Z., Hartzell, G.W. and Stormo, G.D. (1990) Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Applic. Biosci., 6, 81-92.
5. Bucher, P. (1990) Weight matrix description of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. J. Mol. Biol., 212, 563-578.
6. Hertz, G.Z. and Stormo, G.D. (1994) In The Third International Conference on Bioinformatics and Genome Research (Lim, H.A. and Cantor, C.R. eds.), World-Wide Web http:/lwwwscri.fsu.edu/mimil bio94/hertz/hertz.html.
7. Faisst, S. and Meyer, S. (1992) Compilation of vertebrate-encoded transcription factors. Nucleic Acids Res., 20, 3-26.
8. Lebowitz, J. and Ghosh, P.K. (1982) Initiation and regulation of Simian Virus 40 early transcription in vitro J Virol., 41, 449-461
9. Distel, R.J., Ro, H., Rosen, B.S., Groves, D.L. and Spiegelman, B.M. (1987) Nucleoprotein complexes that regulate gene expression in adipocyte differentiation: direct participation of c-fos. Cell, 49, 835-844.