Use of chemical shifts and coupling constants in nuclear magnetic resonance structural studies on peptides and proteins

Methods in Enzymology

Volumn 239, Issue C, 1994, Pages 392-416

  Case, David A ^a   Dyson, H Jane ^a   Wright, Peter E ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CRYSTAL STRUCTURE; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE; STEREOSPECIFICITY; X RAY CRYSTALLOGRAPHY;

EID: 0028672867     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/S0076-6879(94)39015-0     Document Type: Article

References (133)

1. Wüthrich, K, Science, 243, 1989, 45.
2. Case, D.A, Wright, P.E, Clore, G.M, Gronenborn, A, (eds.) NMR in Proteins, 1993, Macmillan, New York, 53.
3. Dyson, H.J, Wright, P.E, Croasmun, W.R, Carlson, R.M.K, (eds.) Two Dimensional NMR Spectroscopy: Applications for Chemists and Biochemists, 2nd Ed., 1993, 655.
4. Dyson, H.J, Wright, P.E, Annu. Rev. Biophys. Biophys. Chem., 20, 1991, 519.
5. Bystrov, V.F, Prog. NMR Spectrosc., 10, 1976, 41.
6. Wishart, D.S, Sykes, B.D, Richards, F.M, J. Mol. Biol., 222, 1991, 311.
7. McIntyre, L, Freeman, R, J. Magn. Reson., 96, 1992, 425.
8. Neuhaus, D, Wagner, G, Vasák, M, Kägi, J.H.R, Wüthrich, K, Eur. J. Biochem., 151, 1985, 257.
9. Kim, Y, Prestegard, J.H, J. Magn. Reson., 84, 1989, 9.
10. Montelione, G.T, Wagner, G, J. Am. Chem. Soc., 111, 1989, 5474.
11. Montelione, G.T, Winkler, M.E, Rauenbuhler, P, Wagner, G, J. Magn. Reson., 82, 1989, 198.
12. Wider, G, Neri, D, Otting, G, Wüthrich, K, J. Magn. Reson., 85, 1989, 426.
13. Chary, K.V.R, Otting, G, Wuthrich, K, J. Magn. Reson., 93, 1991, 218.
14. Delaglio, F, Torchia, D, Bax, A, J. Biomol. NMR, 1, 1991, 439.
15. Schmieder, P, Kurz, M, Kessler, H, J. Biomol. NMR, 1, 1991, 403.
16. Gemmecker, G, Fesik, S.W, J. Magn. Reson., 95, 1991, 208.
17. Wagner, G, Schmieder, P, Thanabal, V, J. Magn. Reson., 93, 1991, 436.
18. Vuister, G, Bax, A, J. Biomol. NMR, 2, 1992, 401.
19. Montelione, G.T, Emerson, S.D, Lyons, B.A, Biopolymers, 32, 1992, 327.
20. Emerson, S.D, Montelione, G.T, J. Am. Chem. Soc., 114, 1992, 354.
21. Griesinger, C, Eggenberger, U, J. Magn. Reson., 97, 1992, 426.
22. Kay, L.E, Bax, A, J. Magn. Reson., 86, 1990, 110.
23. Neri, D, Otting, G, Wüthrich, K, J. Am. Chem. Soc., 112, 1990, 3663.
24. Griesinger, C, Sorensen, O.W, Ernst, R.R, J. Am. Chem. Soc., 107, 1985, 6394.
25. Hansen, P.E, Feeney, J, Roberts, G.C.K, J. Magn. Reson., 17, 1975, 249.
26. Bax, A, Summers, M.F, J. Am. Chem. Soc., 108, 1986, 2093.
27. Hansen, P.E, Biochemistry, 30, 1991, 10457.
28. Oschkinat, H, Pastore, A, Pfandler, P, Bodenhausen, G, J. Magn. Reson., 69, 1986, 559.
29. Müller, L, J. Magn. Reson., 72, 1987, 191.
30. Clore, G.M, Bax, A, Gronenborn, A.M, J. Biomol. NMR, 1, 1991, 13.
31. DeMarco, A, Llinás, M, Wüthrich, K, Biopolymers, 17, 1978, 617.
32. Kessler, H, Griesinger, C, Wagner, K, J. Am. Chem. Soc., 109, 1987, 6927.
33. Schmieder, P, Kessler, H, Biopolymers, 32, 1992, 435.
34. Archer, S.J, Ikura, M, Torchia, D.A, Bax, A, J. Magn. Reson., 95, 1991, 636.
35. Grzesiek, S, Ikura, M, Clore, G.M, Gronenborn, A.M, Bax, A, J. Magn. Reson., 96, 1992, 215.
36. Eggenberger, U, Karimi-Nejad, Y, Thüring, H, Rütenjans, H, Griesinger, C, J. Biomol. NMR, 2, 1992, 583.
37. Kline, A.D, Braun, W, Wüthrich, K, J. Mot. Mot., 204, 1988, 675.
38. Zuiderweg, E.R.P, Boelens, R, Kaptein, R, Biopolymers, 24, 1985, 601.
39. Weber, P.L, Morrison, R, Hare, D, J. Mot. Biol., 204, 1988, 483.
40. Senn, H, Werner, B, Messerle, B.A, Weber, C, Traber, R, Wuthrich, K, FEBS Lett., 249, 1989, 113.
41. Sattler, M, Schwalbe, H, Griesinger, C, J. Am. Chem. Soc., 114, 1992, 1126.
42. Bax, A, Max, D, Zax, D, J. Am. Chem. Soc., 114, 1992, 6923.
43. Pardi, A, Billeter, M, Wüthrich, K, J. Mol. Biol., 180, 1984, 741.
44. Smith, L.J, Sutcliffe, M.J, Redfield, C, Dobson, C.M, Biochemistry, 30, 1991, 986.
45. Ludvigsen, S, Andersen, K.V, Poulsen, F.M, J. Mol. Biol., 217, 1991, 731.
46. Ludvigsen, S, Poulsen, F.M, J. Biomol. NMR, 2, 1992, 227.
47. Mierke, D.F, Grdadolnik, S.G, Kessler, H, J. Am. Chem. Soc., 114, 1992, 8283.
48. Vuister, B.W, Delaglio, F, Bax, A, J. Biomol. NMR, 3, 1993, 67.
49. Kopple, K.D, Wiley, G.R, Tauke, R, Biopolymers, 12, 1973, 627.
50. Wagner, G, Braun, W, Havel, T.F, Schaumann, T, Go, N, Wüthrich, K, J. Mol. Biol., 196, 1987, 611.
51. Moore, J.M, Lepre, C, Gippert, G.P, Chazin, W.J, Case, D.A, Wright, P.E, J. Mol. Biol., 221, 1991, 533.
52. Nagayama, K, Wüthrich, K, Eur. J. Biochem., 115, 1981, 653.
53. Torda, A.E, Brunne, R.M, Huber, T, Kessler, H, van Gunsteren, W.F, J. Biomol. NMR, 3, 1993, 55.
54. Dzakula, Z, Westler, W.M, Edison, A.S, Markley, J.L, J. Am. Chem. Soc., 114, 1992, 6195.
55. Dzakula, Z, Edison, A.S, Westler, W.M, Markley, J.L, J. Am. Chem. Soc., 114, 1992, 6200.
56. Bartik, K, Dobson, C.M, Redfield, C, Eur. J. Biochem., 215, 1993, 255.
57. Stockman, B.J, Scahill, T.A, Strakalaitis, N.A, Brunner, D.P, Yem, A.W, Deibel, M.R Jr., J. Biomol. NMR, 2, 1992, 591.
58. Giessner-Prettre, C, Pullman, B, Q. Rev. Biophys., 20, 1987, 113.
59. Seavey, B.R, Farr, E.A, Westler, W.M, Markley, J.A, J. Biomol. NMR, 1, 1991, 217.
60. Dalgarno, D.C, Levine, B.A, Williams, R.J.P, Biosci. Rep., 3, 1983, 443.
61. Szilágyi, L, Jardetzky, O, J. Magn. Reson., 83, 1989, 441.
62. Pastore, A, Saudek, V, J. Magn. Reson., 90, 1990, 165.
63. Williamson, M.P, Biopolymers, 29, 1990, 1423.
64. Wishart, D.S, Sykes, B.D, Richards, F.M, Biochemistry, 31, 1992, 1647.
65. Andersen, N.H, Cao, B, Chen, C, Biochem. Biophys. Res. Commun., 184, 1992, 1008.
66. Wang, J, Hinck, A.P, Loh, S.N, LeMaster, D.M, Markley, J.L, Biochemistry, 31, 1992, 921.
67. Skelton, N.J, Akke, M, Kördel, J, Thulin, E, Forsén, S, Chazin, W.J, FEBS Lett., 303, 1992, 136.
68. Lee, M.S, Palmer, A.G III, Wright, P.E, J. Biomol. NMR, 2, 1992, 307.
69. Chen, Y, Reizer, J, Saier, M.H Jr., Fairbrother, W.J, Wright, P.E, Biochemistry, 32, 1993, 32.
70. Kuntz, I.D, Kosen, P.A, Craig, E.C, J. Am. Chem. Soc., 113, 1991, 1406.
71. Jiménez, M.A, Blanco, F.J, Rico, M, Santoro, J, Herranz, J, Nieto, J.L, Eur. J. Biochem., 207, 1992, 39.
72. Zhou, N.E, Zhu, B.-Y, Sykes, B.D, Hodges, R.S, J. Am. Chem. Soc., 114, 1992, 4320.
73. Blanco, F.J, Herranz, J, González, C, Jiménez, M.A, Rico, M, Santoro, J, Nieto, J.L, J. Am. Chem. Soc., 114, 1992, 9676.
74. Bruix, M, Perello, M, Herranz, J, Rico, M, Nieto, M.L, Biochem. Biophys. Res. Commun., 167, 1990, 1009.
75. Clore, G.M, Bax, A, Driscoll, P.C, Wingfield, P.T, Gronenborn, A.M, Biochemistry, 29, 1990, 8172.
76. Ikura, M, Spera, S, Barbaro, G, Kay, L.E, Krinks, M, Bax, A, Biochemistry, 30, 1991, 9216.
77. Richarz, R, Wüthrich, K, Biopolymers, 17, 1978, 2133.
78. Howarth, O.W, Lilley, D.M, Prog. NMR Spectrosc., 12, 1978, 1.
79. Spera, S, Bax, A, J. Am. Chem. Soc., 113, 1991, 5490.
80. Reily, M.D, Thanabal, V, Omecinsky, D.O, J. Am. Chem. Soc., 114, 1992, 6251.
81. Urry, D.W, Mitchell, L.W, Ohnishi, T, Proc. Natl. Acad. Sci. U.S.A., 71, 1974, 3265.
82. Asakura, T, Kamio, M, Nishioka, A, Biopolymers, 18, 1979, 467.
83. Ando, S, Ando, I, Shoji, A, Ozaki, T, J. Am. Chem. Soc., 110, 1988, 3380.
84. Asakawa, N, Kuroki, S, Kurosu, H, Ando, I, Shoji, A, Ozaki, T, J. Am. Chem. Soc., 114, 1992, 3261.
85. Tüchsen, E, Hansen, P.E, Int. J. Biol. Macromol., 13, 1991, 2.
86. Glushka, J, Lee, M, Coffin, S, Cowburn, D, J. Am. Chem. Soc., 111, 1989, 7716.
87. Glushka, J, Lee, M, Coffin, S, Cowburn, D, J. Am. Chem. Soc., 112, 1990, 2843.
88. Chesnut, D.B, Annu. Rep. NMR Spectrosc., 21, 1989, 51.
89. Kutzelnigg, W, Fleischer, U, Schindler, M, NMR Basic Princ. Prog., 23, 1990, 165.
90. Webb, G.A, Tossell, J.A, (eds.) Nuclear Magnetic Shieldings and Molecular Structure, 1993, Kluwer Academic Publishers, Dordrecht, The Netherlands, 1.
91. Wolinski, K, Hinton, J.F, Pulay, P, J. Am. Chem. Soc., 112, 1990, 8324.
92. Barfield, M, Yamamura, S.H, J. Am. Chem. Soc., 112, 1990, 4747.
93. de Dios, A.C, Pearson, J.G, Oldfield, E, Science, 260, 1993, 1491.
94. Augspurger, J, Pearson, J.G, Oldfield, E, Dykstra, C.E, Park, K.D, Schwartz, D, J. Magn. Reson., 100, 1992, 342.
95. Baker, J.D, Zerner, M.C, Int. J. Quantum Chem., 43, 1992, 327.
96. Chesnut, D.B, Phung, C.G, Chem. Phys. Lett., 183, 1991, 505.
97. de Dios, A.C, Pearson, J.G, Oldfield, E, J. Am. Chem. Soc., 115, 1993, 9768.
98. Harris, R.K, Nuclear Magnetic Resonance Spectroscopy: A Physicochemical View. 1986, Longman Scientific & Technical, Essex, England.
99. Flygare, W.H, Chem. Rev., 74, 1974, 653.
100. Pauling, L, Proc. Natl. Acad. Sci. U.S.A., 76, 1979, 2293.
101. Haigh, C.W, Mallion, R.B, Prog. NMR Spectrosc., 13, 1980, 303.
102. McConnell, H.M, J. Chem. Phys., 27, 1957, 226.
103. Buckingham, A.D, Can. J. Chem., 38, 1960, 300.
104. Zürcher, R.F, Prog. NMR Spectrosc., 2, 1967, 205.
105. Perkins, S.J, Dwek, R.A, Biochemistry, 19, 1980, 245.
106. Hoch, J.C, Dobson, C.M, Karplus, M, Biochemistry, 21, 1982, 1118.
107. Clayden, N.J, Williams, R.J.P, J. Magn. Reson., 49, 1982, 383.
108. Williamson, M.P, Asakura, T, J. Magn. Reson., 94, 1991, 557.
109. Williamson, M.P, Asakura, T, Nakamura, E, Demura, M, J. Biomol. NMR, 2, 1992, 83.
110. Gresh, N, Giessner-Prettre, C, Biochem. Biophys. Res. Commun., 171, 1990, 1211.
111. Ösapay, K, Case, D.A, J. Am. Chem. Soc., 113, 1991, 9436.
112. Williamson, M.P, Asakura, T, J. Magn. Reson. Ser. B, 101, 1993, 63.
113. Giessner-Prettre, C, Pullman, B, C.R. Seances Acad. Sci., Ser. D, 268, 1969, 1115.
114. Johnson, C.E, Bovey, F.A, J. Chem. Phys., 29, 1958, 1012.
115. Abraham, R.J, Mol. Phys., 4, 1961, 145.
116. Abraham, R.J, Bedford, G.R, McNeillie, D, Wright, B, Org. Magn. Reson., 14, 1980, 8.
117. Abraham, R.J, J. Magn. Reson., 43, 1981, 491.
118. Cross, K.J, Wright, P.E, J. Magn. Reson., 64, 1985, 220.
119. Schmalz, T.G, Norris, C.L, Flygare, W.H, J. Am. Chem. Soc., 95, 1973, 7961.
120. Tigelaar, H.L, Flygare, W.H, J. Am. Chem. Soc., 94, 1972, 343.
121. Asakura, T, Niizawa, Y, Williamson, M.P, J. Magn. Reson., 98, 1992, 646.
122. Ösapay, K, Case, D.A, J. Biomolec. NMR, 4, 1994, 215.
123. Sharp, K.A, Honig, B, Annu. Rev. Biophys. Biophys. Chem., 19, 1990, 301.
124. Warshel, A, Aqvist, J, Annu. Rev. Biophys. Biophys. Chem., 20, 1991, 267.
125. Oldfield, E, Guo, K, Augspurger, J.D, Dykstra, C.E, J. Am. Chem. Soc., 113, 1991, 7537.
126. Pearlman, D.A, Case, D.A, Caldwell, J.C, Seibel, G.L, Singh, U.C, Weiner, P, Kollman, P.A, AMBER 4.0. 1991, University of California, San Francisco.
127. Chandrasekhar, K, Campbell, A.P, Jeng, M.-F, Holmgren, A, Dyson, H.J, J. Biomol. NMR, 4, 1994 in press.
128. Edison, A.S, Markley, J.L, Weinhold, F, J. Phys. Chem., 97, 1993, 11657.
129. Pefia, M.C, Rico, M, Jiménez, M.A, Herranz, J, Santoro, J, Nieto, J.L, Biochim. Biophys. Acta, 957, 1989, 380.
130. Shin, H.-C, Merutka, G, Waltho, J.P, Wright, P.E, Dyson, H.J, Biochemistry, 32, 1993, 6348.
131. Rizo, J, Blanco, F.J, Kobe, B, Bruch, M.D, Gierasch, L.M, Biochemistry, 32, 1993, 4881.
132. Merutka, G, Morikis, D, Brüschweiler, R, Wright, P.E, Biochemistry, 32, 1993, 13089.
133. Waltho, J.P, Feher, V.A, Merutka, G, Dyson, H.J, Wright, P.E, Biochemistry, 32, 1993, 6337.