Principles determining the structure of β-sheet barrels in proteins I. A theoretical analysis

Journal of Molecular Biology

Volumn 236, Issue 5, 1994, Pages 1369-1381

  Murzin, Alexey G ^a   Lesk, Arthur M ^a   Chothia, Cyrus ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

classification of folds; protein architecture; residue packing; structural repertoires; sheet structure

Indexed keywords

ARTICLE; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STRUCTURE; THEORETICAL STUDY;

EID: 0028348081     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/0022-2836(94)90064-7     Document Type: Article

References (42)

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2. Hydrogen bonding in globular proteins
3. Structure of crystalline a-chymotrypsin
4. Deduction and systematic classification of spatial motifs of the antiparallel β structure in globular proteins
5. Conformation of twisted β-sheets in proteins
6. Coiling of β-pleated sheets
7. The classification and origins of protein folding patterns
8. Relative orientation of close-packed -pleated sheets in proteins
9. Orthogonal packing of pleated sheets in proteins
10. Structure of proteins: packing of α-helices and β-sheets
11. Role of interchain interactions in the stabilization of the right-handed twist of β-sheets
12. Analysis of the tertiary structure of protein β-sheet sandwiches
13. Linked and threaded loops in proteins
14. Supersecondary structure of β-proteins
15. Folding and topology of the antiparallel β-structure
16. Why do globular proteins fit the limited set of folding patterns
17. Similarities and differences between human cyclophilin A and other β-barrel structures
18. The “knotting” problem in proteins: loop penetration
19. Estimating the twist of β-strands embedded within a regular parallel β-barrel structure
20. Structural principles of parallel β-barrels in proteins
21. The design of idealized α/β-barrels: analysis of β-sheet closure requirements
22. Structural principles of β/β barrel proteins: the packing of the interior of the sheet
23. Structural patterns in globular proteins
24. Gene duplications in the structural evolution of chymotrypsin
25. Structural principles for the propeller assembly of β-sheets: the preference for seven-fold symmetry
26. β-trefoil fold
27. Principles determining the structure of β-sheet barrels in proteins. II. The observed structures
28. Logical analysis of the mechanism of protein folding: IV super-secondary structures
29. Geometrical criteria for formation of coiled-coil structures of polypeptide chains
30. Twisted hyperboloid (Strophoid) as a model of β-barrels in proteins
31. Folding and topology of the parallel β-structure
32. β-Sheet topology and the relatedness of proteins
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34. Conformational and geometrical properties of β-sheets in proteins. III. Isotropically stressed configurations
35. Conformational and geometrical properties of β-sheets in proteins. I. Parallel β-sheets
36. Conformational and geometrical properties of sheets in proteins. II. Antiparallel and mixed β-sheets
37. The conformation of polypeptide chains in proteins
38. Orthogonal ββ motifs in proteins
39. On the conformation of proteins: the handedness of the β-strand-α-helix-β-strand unit
40. On the conformation of proteins: the handedness of the connection between parallel β-strands
41. Analysis and Prediction of Structural Motifs in the Glycolytic Enzymes [and Discussion]
42. Topological and stereochemical restrictions in β-sandwich protein structures