-
1
-
-
0021891887
-
Effects of site-specific amino acid modification on protein interactions and biological function
-
Ackers, G. F. & Smith, F. R. (1985). Effects of site-specific amino acid modification on protein interactions and biological function. Annu. Rev. Biochem. 54, 597-629.
-
(1985)
Annu. Rev. Biochem.
, vol.54
, pp. 597-629
-
-
Ackers, G.F.1
Smith, F.R.2
-
2
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
Pullman, B, ed.), Reidel, Dordrecht
-
Berendsen, H J. C., Postma, J. P. M., van Gunsteren, W. P. & Hermans, D. (1981). Interaction models for water in relation to protein hydration. In Intermolecular Forces (Pullman, B, ed.), 331-342, Reidel, Dordrecht.
-
(1981)
Intermolecular Forces
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.P.3
Hermans, D.4
-
3
-
-
0024578173
-
Free energy via molecular simulation: Applications to chemical and biochemical systems
-
Beveridge, D. L. & Di Capua, F. M. (1989). Free energy via molecular simulation: applications to chemical and biochemical systems. Annu. Rev. Biophys. Biophys. Chem. 18, 431-492.
-
(1989)
Annu. Rev. Biophys. Biophys. Chem.
, vol.18
, pp. 431-492
-
-
Beveridge, D.L.1
Dicapua, F.M.2
-
4
-
-
0027193825
-
Engineering type 1 copper sites in proteins
-
Canters, G. W. & Gilardi, G. (1993). Engineering type 1 copper sites in proteins. FEBS Letters, 325, 39-48.
-
(1993)
FEBS Letters
, vol.325
, pp. 39-48
-
-
Canters, G.W.1
Gilardi, G.2
-
5
-
-
0021504608
-
The use of double mutants to detect structural changes in the active site of the tyrosyl-t RNA synthetase (Bacillus stearothermophilus)
-
Carter, P. J., Winter, G., Wilkinson, A. J. & Fersht, A. R, (1984). The use of double mutants to detect structural changes in the active site of the tyrosyl-t RNA synthetase (Bacillus stearothermophilus). Cell, 38, 835-840.
-
(1984)
Cell
, vol.38
, pp. 835-840
-
-
Carter, P.J.1
Winter, G.2
Wilkinson, A.J.3
Fersht, A.R.4
-
6
-
-
0025370815
-
Dominant forces in protein folding
-
Dill, K. A. (1990). Dominant forces in protein folding. Biochemistry, 29, 7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
7
-
-
0024281312
-
Relationships between apparent binding energies measured in site-directed mutagenesis experiments and energetics of binding and catalysis
-
Fersht, A. R. (1988). Relationships between apparent binding energies measured in site-directed mutagenesis experiments and energetics of binding and catalysis. Biochemistry, 27, 1577-1580.
-
(1988)
Biochemistry
, vol.27
, pp. 1577-1580
-
-
Fersht, A.R.1
-
8
-
-
0027462173
-
Principles of protein stability derived from protein engineering experiments
-
Fersht, A. R. & Serrano, L. (1993). Principles of protein stability derived from protein engineering experiments. Curr. Opin. Struct. Biol. 3, 75-83.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 75-83
-
-
Fersht, A.R.1
Serrano, L.2
-
9
-
-
0026511656
-
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding
-
Fersht, A. R., Matouschek, A. & Serrano, L. (1992). The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding. J. Mol. Biol. 224, 771-782.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
10
-
-
0024365336
-
Hidden thermodynamics of mutant proteins: A molecular dynamics analysis
-
Gao, J., Kuczera, K., Tidor, B. & Karplus, M. (1989). Hidden thermodynamics of mutant proteins: a molecular dynamics analysis. Science, 244, 1069-1072.
-
(1989)
Science
, vol.244
, pp. 1069-1072
-
-
Gao, J.1
Kuczera, K.2
Tidor, B.3
Karplus, M.4
-
11
-
-
0027613969
-
An approximate but efficient method to calculate free energy trends by computer simulation: Application to dihydrofolate reductase-inhibitor complexes
-
Gerber, P. R., Mark, A. E. & van Gunsteren, W. F. (1993). An approximate but efficient method to calculate free energy trends by computer simulation: application to dihydrofolate reductase-inhibitor complexes. Comp. Aid. Mol. Des. 7, 305-323.
-
(1993)
Comp. Aid. Mol. Des.
, vol.7
, pp. 305-323
-
-
Gerber, P.R.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
12
-
-
0026611038
-
The importance of Asn47 for structure and reactivity of azurin from Alcaligenes denitrificansas studied by site directed mutagenesis
-
Hoitink, C. W. G. & Canters, G. W. (1992). The importance of Asn47 for structure and reactivity of azurin from Alcaligenes denitrificans as studied by site directed mutagenesis. J. Biol. Chem. 267, 13836-13842.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 13836-13842
-
-
Hoitink, C.W.G.1
Canters, G.W.2
-
13
-
-
0023645205
-
Non-additivity in protein-protein interactions
-
Horovitz, A. (1987). Non-additivity in protein-protein interactions. J. Mol. Biol. 196, 733-735.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 733-735
-
-
Horovitz, A.1
-
14
-
-
0025126043
-
Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins
-
Horovitz, A. & Fersht, A. R. (1990). Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins., J. Mol. Biol. 214. 613-617.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 613-617
-
-
Horovitz, A.1
Fersht, A.R.2
-
15
-
-
0025130067
-
Free energy of sickling: A simulation analysis
-
Kuczera, K., Gao, J., Tidor, B. & Karplus, M. (1990). Free energy of sickling: a simulation analysis. Broc. Nat. Acad. Sci., C.S.A. 87, 8481-8485.
-
(1990)
Broc. Nat. Acad. Sci., C.S.A.
, vol.87
, pp. 8481-8485
-
-
Kuczera, K.1
Gao, J.2
Tidor, B.3
Karplus, M.4
-
16
-
-
0026343488
-
Conformational flexibility of aqueous monomeric and dimeric insulin: A molecular dynamics study
-
Mark, A. E., Berendsen, H. J. C. & van Gunsteren, W. F. (1991). Conformational flexibility of aqueous monomeric and dimeric insulin: a molecular dynamics study. Biochemistry, 30, 10866-10871.
-
(1991)
Biochemistry
, vol.30
, pp. 10866-10871
-
-
Mark, A.E.1
Berendsen, H.J.C.2
Van Gunsteren, W.F.3
-
17
-
-
0027321958
-
Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamics/free energy perturbation approaches
-
Miyamoto, S. & Kollman, P. A. (1993). Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamics/free energy perturbation approaches. Proteins' Struct. Funct. Genet. 16, 226-245.
-
(1993)
Proteins' Struct. Funct. Genet.
, vol.16
, pp. 226-245
-
-
Miyamoto, S.1
Kollman, P.A.2
-
18
-
-
0001743579
-
Blue copper proteins. The copper site in azurin from Alcaligenes denitrificans
-
Norris, G. E., Anderson, B. F. & Baker, E. N. (1986). Blue copper proteins. The copper site in azurin from Alcaligenes denitrificans. J. Amer. Chem. Soc. 108, 2784-2785.
-
(1986)
J. Amer. Chem. Soc
, vol.108
, pp. 2784-2785
-
-
Norris, G.E.1
Erson, B.F.2
Baker, E.N.3
-
19
-
-
0025787845
-
Contribution of the hydrophobic effect to protein stability: Analysis based on simulations of the Ile96-+Ala mutation in barnase
-
Prevost, M., Wodak, S. J., Tidor, B. & Karplus, M. (1991). Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile96-+Ala mutation in barnase. Proc. Nat. Acad. Sci., U.S.A. 88, 10880-10884.
-
(1991)
Proc. Nat. Acad. Sci., U.S.A.
, vol.88
, pp. 10880-10884
-
-
Prevost Wodak, M.S.J.1
Tidor, B.2
Karplus, M.3
-
20
-
-
0027227315
-
The nature of the ion binding interactions in EF-hand peptide analogs: Free energy simulation of Asp to Asn mutations
-
Prod'hom, B. & Karplus, M. (1993). The nature of the ion binding interactions in EF-hand peptide analogs: free energy simulation of Asp to Asn mutations. Protein Eng. 6, 585-592.
-
(1993)
Protein Eng
, vol.6
, pp. 585-592
-
-
Prod'hom, B.1
Karplus, M.2
-
21
-
-
0025911856
-
Surface electrostatic interactions contribute little to stability of barnase
-
Sali, U., By croft, M. & Fersht, A. R. (1991). Surface electrostatic interactions contribute little to stability of barnase. J. Mol. Biol. 220, 779-788.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 779-788
-
-
Sali, U.1
By Croft, M.2
Fersht, A.R.3
-
22
-
-
0025093185
-
Estimating the contribution of surface electrostatic interactions to protein stability by using double mutant cycles
-
Serrano, L., Horovitz, A., Avron, R., By croft, M. & Fersht, A. R. (1990). Estimating the contribution of surface electrostatic interactions to protein stability by using double mutant cycles. Biochemistry, 29, 9343-9352.
-
(1990)
Biochemistry
, vol.29
, pp. 9343-9352
-
-
Serrano, L.1
Horovitz, A.2
Avron, R.3
By Croft, M.4
Fersht, A.R.5
-
23
-
-
0025756736
-
Aromatic-aromatic interactions and protein stability: Investigation by double-mutant cycles
-
Serrano, L., Bycroft, M. & Fersht, A. R. (1991). Aromatic-aromatic interactions and protein stability: investigation by double-mutant cycles. J. Mol. Biol. 218, 465-475.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 465-475
-
-
Serrano, L.1
Bycroft, M.2
Fersht, A.R.3
-
24
-
-
0027191902
-
Can the stability of protein mutants be predicted by free energy calculations?
-
Shi, Y.-Y., Mark, A. E., Wang, C.X., Hang, F., Berendsen, H. J. C. & van Gunsteren, W. F. (1993). Can the stability of protein mutants be predicted by free energy calculations? Protein Eng. 3, 289-295.
-
(1993)
Protein Eng
, vol.3
, pp. 289-295
-
-
Shi, Y.-Y.1
Mark, A.E.2
Wang, C.X.3
Hang, F.4
Berendsen, H.J.C.5
Van Gunsteren, W.F.6
-
25
-
-
0026641163
-
Thermodynamics of protein peptide interactions in the ribonuclease-S system studied by molecular dynamics and free energy calculations
-
Simonson, T. & Brunger, A. T. (1992). Thermodynamics of protein peptide interactions in the ribonuclease-S system studied by molecular dynamics and free energy calculations. Biochemistry, 31, 8661-8674.
-
(1992)
Biochemistry
, vol.31
, pp. 8661-8674
-
-
Simonson, T.1
Brunger, A.T.2
-
26
-
-
0003196044
-
Free energy difference calculations in biomo-lecular systems
-
van Gunsteren, W. F., Weiner, P. K. & Wilkinson, A, J., ESCOM Science Publishers, Leiden, The Netherlands
-
Straatsma, T. P., Zacharias, M, & Mc Cammon, J. A. (1993). Free energy difference calculations in biomo-lecular systems. In Computer Simulation of Biomolecular Systems, Theoretical and Experimental Applications (van Gunsteren, W. F., Weiner, P. K. & Wilkinson, A, J., eds), vol. 2, 349-367, ESCOM Science Publishers, Leiden, The Netherlands.
-
(1993)
Computer Simulation of Biomolecular Systems, Theoretical and Experimental Applications
, vol.2
, pp. 349-367
-
-
Straatsma, T.P.1
Zacharias, M.2
McCammon, J.A.3
-
27
-
-
0025732376
-
Simulation analysis of the stability mutant R96H of T4 lysozyme
-
Tidor, B. & Karplus, M. (1991). Simulation analysis of the stability mutant R96H of T4 lysozyme. Biochemistry, 30, 3217-3228.
-
(1991)
Biochemistry
, vol.30
, pp. 3217-3228
-
-
Tidor, B.1
Karplus, M.2
-
28
-
-
0003831852
-
-
Biomos, Nijenborgh, AG, Groningen, The Netherlands
-
van Gunsteren, W. F. & Berendsen, H. J. C. (1987). Groningen Molecular Simulation (GROM OS) Library Manual, Biomos, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.
-
(1987)
Groningen Molecular Simulation (GROM OS) Library Manual
, vol.4
, pp. 9747
-
-
Van Gunsteren, W.F.1
Berendsen, H.2
-
29
-
-
0001492503
-
Computation of free energy in practice: Choice of approximations and accuracy limiting factors
-
van Gunsteren, W. F., Weiner, P. K. & Wilkinson, A. J., ESCOM Science Publishers, Leiden, The Netherlands
-
van Gunsteren, W. F., Beutler, T. C., Fraternali, F., King, P. M., Mark, A. E. & Smith, P. E. (1993). Computation of free energy in practice: choice of approximations and accuracy limiting factors. In Computer Simulation of Biomolecular Systems, Theoretical and Experimental Applications (van Gunsteren, W. F., Weiner, P. K. & Wilkinson, A. J., eds), vol. 2, 315-348, ESCOM Science Publishers, Leiden, The Netherlands.
-
(1993)
Computer Simulation of Biomolecular Systems, Theoretical and Experimental Applications
, vol.2
, pp. 315-348
-
-
Van Gunsteren, W.F.1
Beutler, T.C.2
Fraternali, F.3
King, P.M.4
Mark, A.E.5
Smith, P.E.6
-
30
-
-
0242677236
-
Systematic sensitivity analyses in free energy calculations
-
Wong, C. F. (1991). Systematic sensitivity analyses in free energy calculations. J. Anier. Chem. Soc. 113. 3208-3209.
-
(1991)
J. Anier. Chem. Soc.
, vol.113
, pp. 3208-3209
-
-
Wong, C.F.1
|